Re: [Freesurfer] surface does not match

2012-04-23 Thread Bruce Fischl
Hi Ruthger

that means that the subject was partially reprocessed but not completed. 
You can finish it with:

recon-all -s subject -sd subjects dir -make all

cheers
Bruce


On Thu, 19 Apr 2012, Righart, Ruthger  Dr. wrote:

 Dear Freesurfers,

 I analyzed a dataset with FS 5.1 but upon loading the data in tksurfer I get 
 the following error:

 mrisReadTriangleFile(/.../surf/lh.sphere.reg): surface doesn't match 
 /.../surf/lh.inflated

 The same error occurs when I run mris_preproc as a step before GLM analyses 
 (mri_glmfit).

 A similar problem was described in the mailing list and offered the 
 possibility to resolve this with the following command: recon-all -s subjid 
 -make all

 This command only runs at the moment for a few of my subjects (I am at the 
 moment waiting for the results of these analyses). For the majority of my 
 subjects having the same error in mrisReadTriangleFile this command does not 
 run. For those, it seems that the command -make all is not recognized.

 Does anyone know why it does not run or is there an alternative solution in 
 FS 5.1. for this problem?

 Thank you very much in advance for your help!

 Ruthger Righart
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[Freesurfer] surface does not match

2012-04-19 Thread Righart, Ruthger Dr.
Dear Freesurfers,

I analyzed a dataset with FS 5.1 but upon loading the data in tksurfer I get 
the following error:

mrisReadTriangleFile(/.../surf/lh.sphere.reg): surface doesn't match 
/.../surf/lh.inflated

The same error occurs when I run mris_preproc as a step before GLM analyses 
(mri_glmfit).

A similar problem was described in the mailing list and offered the possibility 
to resolve this with the following command: recon-all -s subjid -make all

This command only runs at the moment for a few of my subjects (I am at the 
moment waiting for the results of these analyses). For the majority of my 
subjects having the same error in mrisReadTriangleFile this command does not 
run. For those, it seems that the command -make all is not recognized. 

Does anyone know why it does not run or is there an alternative solution in FS 
5.1. for this problem?

Thank you very much in advance for your help! 

Ruthger Righart
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Freesurfer@nmr.mgh.harvard.edu
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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.