Re: [Freesurfer] tksurfer - view only clusters from a certain nr of voxels

2012-12-14 Thread Douglas N Greve
Hi Alex, you can't do that with tksurfer. You will have to run 
mri_surfcluster to create a new overlay with clusters smaller than 50 
removed.
doug
ps. Please send emails to the FS list and not directly to me. thanks!


On 12/14/2012 02:17 PM, Alex Hanganu wrote:
 Dear Douglas,

 I am using tksurfer for analysing the results.

 Can you pleasetell me - what flag should I use in order to limit the 
 minimalthreshold of clusters to a certain number of voxels ?
 For example if I want to show only those significant clusters, which 
 have at least 50 voxels.

 I couldn't find this answer in the wiki.

 Thanks !!

 Sincerely,

 Alex.

-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

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Re: [Freesurfer] tksurfer - view only clusters from a certain nr of voxels

2012-12-14 Thread Alex Hanganu
Thanks Douglas !

OK !!

Alex.



Le 14/12/2012 2:27 PM, Douglas N Greve a écrit :
 Hi Alex, you can't do that with tksurfer. You will have to run 
 mri_surfcluster to create a new overlay with clusters smaller than 50 
 removed.
 doug
 ps. Please send emails to the FS list and not directly to me. thanks!


 On 12/14/2012 02:17 PM, Alex Hanganu wrote:
 Dear Douglas,

 I am using tksurfer for analysing the results.

 Can you please tell me - what flag should I use in order to limit the 
 minimal threshold of clusters to a certain number of voxels ?
 For example if I want to show only those significant clusters, which 
 have at least 50 voxels.

 I couldn't find this answer in the wiki.

 Thanks !!

 Sincerely,

 Alex.


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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.