Hi Andrea
did you try running it with -bigventricles?
cheers
Bruce
On Thu, 12 Jun 2014, Andrea
Horváth wrote:
Dear Freesurfer Experts,
I have two questions:
1. How can I add a previously created a tumor mask along with the mprage to
improve segmentation?
2. I ran recon-all on a subject with extreme hydrocephalus. Registration to
Talairach space and skull stripping were OK. However, a part of occipital
white matter was not recognized as white matter even after adding control
points and running recon-all -autorecon2-cp -autorecon3 due to the large
ventricle as you can see in the attachment. What can you recommend to fix
this problem?
Thank you for your help!
Cheers,
Andrea
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