Re: [Freesurfer] volume of CSF for hemispheres
Hi Tanja, type 'coordinates' into the wiki search on our page. doug On 2/21/11 4:11 AM, Tetiana Dadakova wrote: > Hello Bruce, > > Could you please give me a link to this coordinate tutorial. I don't > think I can find it. > > Thank you, > Tanja. > > > On Wed, Feb 16, 2011 at 5:28 PM, Bruce Fischl > wrote: >> Hi Tanja, >> >> I think Doug just put up a coordinate tutorial. For each voxel in the aseg >> label you are interested, compute it's tal coords and if the x is negative >> assign it to one pool and if it is positive assign it to the other >> >> cheers >> Bruce >> >> >> On Wed, 16 Feb 2011, Tetiana Dadakova wrote: >> >>> Thank you, Bruce. >>> >>> Could you recommend me any tutorial on this? Or probably can you just >>> mention some steps or commands, where I should insert coordinates? >>> >>> Tanja. >>> >>> >>> On Wed, Feb 16, 2011 at 3:15 PM, Bruce Fischl >>> wrote: Hi Tanja we don't do this by default, but I guess you could use the Talairach x coordinate to try to differentiate. cheers Bruce On Wed, 16 Feb 2011, Tetiana Dadakova wrote: > Dear list, > > I would like to calculate CSF volume separately for left and right > hemispheres. In aseg.stats file I have volumes for 3rd, 4th and 5th > ventricles as a whole. > Is there any possibility to get volume values for right/left parts of > 3rd, 4th and 5th ventricles? > > Thank you, > Tanja. > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. >>> >>> > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] volume of CSF for hemispheres
Hello Bruce, Could you please give me a link to this coordinate tutorial. I don't think I can find it. Thank you, Tanja. On Wed, Feb 16, 2011 at 5:28 PM, Bruce Fischl wrote: > Hi Tanja, > > I think Doug just put up a coordinate tutorial. For each voxel in the aseg > label you are interested, compute it's tal coords and if the x is negative > assign it to one pool and if it is positive assign it to the other > > cheers > Bruce > > > On Wed, 16 Feb 2011, Tetiana Dadakova wrote: > >> Thank you, Bruce. >> >> Could you recommend me any tutorial on this? Or probably can you just >> mention some steps or commands, where I should insert coordinates? >> >> Tanja. >> >> >> On Wed, Feb 16, 2011 at 3:15 PM, Bruce Fischl >> wrote: >>> >>> Hi Tanja >>> >>> we don't do this by default, but I guess you could use the Talairach x >>> coordinate to try to differentiate. >>> >>> cheers >>> Bruce >>> On Wed, 16 Feb 2011, Tetiana Dadakova wrote: >>> Dear list, I would like to calculate CSF volume separately for left and right hemispheres. In aseg.stats file I have volumes for 3rd, 4th and 5th ventricles as a whole. Is there any possibility to get volume values for right/left parts of 3rd, 4th and 5th ventricles? Thank you, Tanja. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to whom it >>> is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >>> >>> >> >> >> > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] volume of CSF for hemispheres
Hi Tanja, I think Doug just put up a coordinate tutorial. For each voxel in the aseg label you are interested, compute it's tal coords and if the x is negative assign it to one pool and if it is positive assign it to the other cheers Bruce On Wed, 16 Feb 2011, Tetiana Dadakova wrote: > Thank you, Bruce. > > Could you recommend me any tutorial on this? Or probably can you just > mention some steps or commands, where I should insert coordinates? > > Tanja. > > > On Wed, Feb 16, 2011 at 3:15 PM, Bruce Fischl > wrote: >> Hi Tanja >> >> we don't do this by default, but I guess you could use the Talairach x >> coordinate to try to differentiate. >> >> cheers >> Bruce >> On Wed, 16 Feb 2011, Tetiana Dadakova wrote: >> >>> Dear list, >>> >>> I would like to calculate CSF volume separately for left and right >>> hemispheres. In aseg.stats file I have volumes for 3rd, 4th and 5th >>> ventricles as a whole. >>> Is there any possibility to get volume values for right/left parts of >>> 3rd, 4th and 5th ventricles? >>> >>> Thank you, >>> Tanja. >>> ___ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> > > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] volume of CSF for hemispheres
Thank you, Bruce. Could you recommend me any tutorial on this? Or probably can you just mention some steps or commands, where I should insert coordinates? Tanja. On Wed, Feb 16, 2011 at 3:15 PM, Bruce Fischl wrote: > Hi Tanja > > we don't do this by default, but I guess you could use the Talairach x > coordinate to try to differentiate. > > cheers > Bruce > On Wed, 16 Feb 2011, Tetiana Dadakova wrote: > >> Dear list, >> >> I would like to calculate CSF volume separately for left and right >> hemispheres. In aseg.stats file I have volumes for 3rd, 4th and 5th >> ventricles as a whole. >> Is there any possibility to get volume values for right/left parts of >> 3rd, 4th and 5th ventricles? >> >> Thank you, >> Tanja. >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] volume of CSF for hemispheres
Hi Tanja we don't do this by default, but I guess you could use the Talairach x coordinate to try to differentiate. cheers Bruce On Wed, 16 Feb 2011, Tetiana Dadakova wrote: > Dear list, > > I would like to calculate CSF volume separately for left and right > hemispheres. In aseg.stats file I have volumes for 3rd, 4th and 5th > ventricles as a whole. > Is there any possibility to get volume values for right/left parts of > 3rd, 4th and 5th ventricles? > > Thank you, > Tanja. > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] volume of CSF for hemispheres
Dear list, I would like to calculate CSF volume separately for left and right hemispheres. In aseg.stats file I have volumes for 3rd, 4th and 5th ventricles as a whole. Is there any possibility to get volume values for right/left parts of 3rd, 4th and 5th ventricles? Thank you, Tanja. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
