Re: [Freesurfer] voxel values in destrieux file

[pierre deman]

ok thanks a lot !
do you know when it will be fixed in the recon-all as well ?

Cheers,
Pierre



On Fri, Aug 19, 2016 at 7:45 PM, Douglas Greve 
wrote:

> The error is in recon-all. If you want to fix this one outside of recon-all 
> you can run
> cd $SUBJECTS_DIR/subject/mri
> mri_aparc2aseg --s subject --volmask --aseg aseg.presurf.hypos --a2009s
>
>
> On 8/19/16 11:08 AM, pierre deman wrote:
>
> Hello,
>
> I am looking at the destrieux atlas generated by recon-all (I use the
> freesurfer dev version), the file aparc.a2009+aseg.mgz), and sometimes the
> value of a voxel doesn't exist in the FreesurferColorLut. I have quite a
> lot of values between 2036 and 2100 (2038, 2074, 2075 for example) and I
> don't find these values in the FreeSurferColorLut.
>
> Is that normal ? What do they correspond at ?
>
> Regards,
> Pierre
>
>
> --
> DEMAN Pierre
> Mobile : +33 7 82 57 80 94
>
>
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-- 
DEMAN Pierre
Mobile : +33 7 82 57 80 94
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Re: [Freesurfer] voxel values in destrieux file

[Douglas Greve]

The error is in recon-all. If you want to fix this one outside of recon-all you 
can run
cd $SUBJECTS_DIR/subject/mri
mri_aparc2aseg --s subject --volmask --aseg aseg.presurf.hypos --a2009s


On 8/19/16 11:08 AM, pierre deman wrote:

Hello,

I am looking at the destrieux atlas generated by recon-all (I use the 
freesurfer dev version), the file aparc.a2009+aseg.mgz), and sometimes 
the value of a voxel doesn't exist in the FreesurferColorLut. I have 
quite a lot of values between 2036 and 2100 (2038, 2074, 2075 for 
example) and I don't find these values in the FreeSurferColorLut.


Is that normal ? What do they correspond at ?

Regards,
Pierre


--
DEMAN Pierre
Mobile : +33 7 82 57 80 94


___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
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Re: [Freesurfer] voxel values in destrieux file

[Douglas Greve]

Sorry, that is a bug. I introduced it  in a change a few months ago. 
I'll fix it. Thanks!



On 8/19/16 11:08 AM, pierre deman wrote:

Hello,

I am looking at the destrieux atlas generated by recon-all (I use the 
freesurfer dev version), the file aparc.a2009+aseg.mgz), and sometimes 
the value of a voxel doesn't exist in the FreesurferColorLut. I have 
quite a lot of values between 2036 and 2100 (2038, 2074, 2075 for 
example) and I don't find these values in the FreeSurferColorLut.


Is that normal ? What do they correspond at ?

Regards,
Pierre


--
DEMAN Pierre
Mobile : +33 7 82 57 80 94


___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


___
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https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

[Freesurfer] voxel values in destrieux file

[pierre deman]

Hello,

I am looking at the destrieux atlas generated by recon-all (I use the
freesurfer dev version), the file aparc.a2009+aseg.mgz), and sometimes the
value of a voxel doesn't exist in the FreesurferColorLut. I have quite a
lot of values between 2036 and 2100 (2038, 2074, 2075 for example) and I
don't find these values in the FreeSurferColorLut.

Is that normal ? What do they correspond at ?

Regards,
Pierre


-- 
DEMAN Pierre
Mobile : +33 7 82 57 80 94
___
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https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.