Re: [Freesurfer] Freeview 'quit unexpectedly' before opening

[fsbuild]

External Email - Use Caution

When you say you are running Mojave, I think you probably meant to write 
10..14.6 (not 10.16.6).
You could check you have the latest version of XQuartz (2.8.5) installed 
from,https://secure-web.cisco.com/11eALbuyxL0_txSil8AchFZPgix3GCpAuJbqcYDFJFtJt6F-kBaf9JU5a338EKemH6N8VWFBwwDAwLWuuQJkh2SpdmbjcCUa76MdxUsBf1e_Cn3t1OtIUBfxrHP25IKD9WR6MAbUjPnX32kYdki8uhdNtqBeX1ROEXkPb3jlB_CZmEhuI3qIaYUx6FLN0oI9P6qQpP8MfUn1MD-hv2gomxH2sQkzNtqWuw6oLLHKAQxmo4cFHuvYa709L7ZZ0Qi89X11sEtAAVLwbOgucQ-Aon2ovVKDrSd9ZWLsERG05Q--yi2OKSN1wvIzUiHNQbzBQSeuSsxJ0-cy4wI8tCvNDwQ/https%3A%2F%2Fwww.xquartz.org%2F
You may need to reboot the machine after installing Xquartz.
Once back up, open a new terminal window and run the bash shell,
$ bash
Try putting your license file, e.g., license.txt. in your $HOME directory, and 
then set the environment variable FS_LICENSE to its absolute path, e.g.
$ cd $HOME$ head -1 license.tx...@somewhere.org.  <—— email address you 
used to register with
$ export FS_LICENSE=$HOME/license.txt$ head -1 $fs_licens...@somewhere.org. 
 <—— email address you used to register with
Then the usual setup,$ export FREESURFER_HOME=/Applications/freesurfer/7.3.2$ 
source $FREESURFER_HOME/SetUpFreeSurfer.sh
Then try opening an empty Freeview window again,$ freeview
- R.
On Feb 8, 2023, at 14:28, Rankin McGugin  
wrote:
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Re: [Freesurfer] Freeview 'quit unexpectedly' before opening

[Wang, Ruopeng]

Can you try the latest dev build from here?
https://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview

Ruopeng

On Feb 8, 2023, at 2:28 PM, Rankin McGugin 
mailto:rankin.mcgu...@gmail.com>> wrote:


External Email - Use Caution

of course, see attached



Rankin W. McGugin, PhD
Research Assistant Professor
Department of Psychology
Vanderbilt University
email: rankin.mcgu...@vanderbilt.edu
work phone: (615) 322-4644


On Wed, Feb 8, 2023 at 1:22 PM Wang, Ruopeng 
mailto:rwa...@mgh.harvard.edu>> wrote:
Would it be possible to send us the full crash report? You can find it in the 
Console app.

Best,
Ruopeng

On Feb 8, 2023, at 1:48 PM, Rankin McGugin 
mailto:rankin.mcgu...@gmail.com>> wrote:


External Email - Use Caution

Here is my error log:

Last login: Wed Feb  8 12:03:23 on ttys000
Rankins-MacBook-Pro:~ rankinmcgugin$ export 
FREESURFER_HOME=/Applications/freesurfer/7.3.2
Rankins-MacBook-Pro:~ rankinmcgugin$ source $FREESURFER_HOME/SetUpFreeSurfer.sh
 freesurfer-darwin-macOS-7.3.2-20220804-6354275 
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME   /Applications/freesurfer/7.3.2
FSFAST_HOME   /Applications/freesurfer/7.3.2/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR  /Applications/freesurfer/7.3.2/subjects
MNI_DIR   /Applications/freesurfer/7.3.2/mni
Rankins-MacBook-Pro:~ rankinmcgugin$
Rankins-MacBook-Pro:~ rankinmcgugin$ which freeview
/Applications/freesurfer/7.3.2/bin/freeview
Rankins-MacBook-Pro:~ rankinmcgugin$ freeview
/Applications/freesurfer/7.3.2/bin/freeview: line 2:  1592 Segmentation fault: 
11  $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@"
Rankins-MacBook-Pro:~ rankinmcgugin$



Rankin W. McGugin, PhD
Research Assistant Professor
Department of Psychology
Vanderbilt University
email: rankin.mcgu...@vanderbilt.edu
work phone: (615) 322-4644


-- Forwarded message -
From: Rankin McGugin mailto:rankin.mcgu...@gmail.com>>
Date: Wed, Feb 8, 2023 at 12:47 PM
Subject: Freeview 'quit unexpectedly' before opening
To: mailto:freesurfer@nmr.mgh.harvard.edu>>


Hello,

I am a longtime FS user. I have read threads on this topic but no suggestions 
work in my case.  I have the license file in place. I removed my previous 
version of FS and have updated to 7.3.2.  However, now when I try to start 
Freeview, I get this problem report before the app even opens:

I have tried downloading the standalone Freeview, but get the same error.  I 
have restarted the computer, completely removed everything and redownloaded it, 
but still the same issue persists.
I am using macOS Mojave, 10.16.6
Are you able to guide me how to fix this and open Freeview?

Thank you!

Rankin W. McGugin, PhD
Research Assistant Professor
Department of Psychology
Vanderbilt University
email: rankin.mcgu...@vanderbilt.edu
work phone: (615) 322-4644
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Re: [Freesurfer] Freeview 'quit unexpectedly' before opening

[Wang, Ruopeng]

Would it be possible to send us the full crash report? You can find it in the 
Console app.

Best,
Ruopeng

On Feb 8, 2023, at 1:48 PM, Rankin McGugin 
mailto:rankin.mcgu...@gmail.com>> wrote:


External Email - Use Caution

Here is my error log:

Last login: Wed Feb  8 12:03:23 on ttys000
Rankins-MacBook-Pro:~ rankinmcgugin$ export 
FREESURFER_HOME=/Applications/freesurfer/7.3.2
Rankins-MacBook-Pro:~ rankinmcgugin$ source $FREESURFER_HOME/SetUpFreeSurfer.sh
 freesurfer-darwin-macOS-7.3.2-20220804-6354275 
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME   /Applications/freesurfer/7.3.2
FSFAST_HOME   /Applications/freesurfer/7.3.2/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR  /Applications/freesurfer/7.3.2/subjects
MNI_DIR   /Applications/freesurfer/7.3.2/mni
Rankins-MacBook-Pro:~ rankinmcgugin$
Rankins-MacBook-Pro:~ rankinmcgugin$ which freeview
/Applications/freesurfer/7.3.2/bin/freeview
Rankins-MacBook-Pro:~ rankinmcgugin$ freeview
/Applications/freesurfer/7.3.2/bin/freeview: line 2:  1592 Segmentation fault: 
11  $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@"
Rankins-MacBook-Pro:~ rankinmcgugin$



Rankin W. McGugin, PhD
Research Assistant Professor
Department of Psychology
Vanderbilt University
email: rankin.mcgu...@vanderbilt.edu
work phone: (615) 322-4644


-- Forwarded message -
From: Rankin McGugin mailto:rankin.mcgu...@gmail.com>>
Date: Wed, Feb 8, 2023 at 12:47 PM
Subject: Freeview 'quit unexpectedly' before opening
To: mailto:freesurfer@nmr.mgh.harvard.edu>>


Hello,

I am a longtime FS user. I have read threads on this topic but no suggestions 
work in my case.  I have the license file in place. I removed my previous 
version of FS and have updated to 7.3.2.  However, now when I try to start 
Freeview, I get this problem report before the app even opens:

I have tried downloading the standalone Freeview, but get the same error.  I 
have restarted the computer, completely removed everything and redownloaded it, 
but still the same issue persists.
I am using macOS Mojave, 10.16.6
Are you able to guide me how to fix this and open Freeview?

Thank you!

Rankin W. McGugin, PhD
Research Assistant Professor
Department of Psychology
Vanderbilt University
email: rankin.mcgu...@vanderbilt.edu
work phone: (615) 322-4644
___
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___
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Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is 
addressed.  If you believe this e-mail was sent to you in error and the e-mail 
contains patient information, please contact the Mass General Brigham 
Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline 
 .
Please note that this e-mail is not secure (encrypted).  If you do not wish to 
continue communication over unencrypted e-mail, please notify the sender of 
this message immediately.  Continuing to send or respond to e-mail after 
receiving this message means you understand and accept this risk and wish to 
continue to communicate over unencrypted e-mail.