Re: [Freesurfer] Freeview displaying images in the wrong orientation

2023-02-27 Thread Nathan Kindred (PGR) 
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That worked, thank you so much!

Best,
Nathan

From: freesurfer-boun...@nmr.mgh.harvard.edu 
 on behalf of Wang, Ruopeng 

Date: Monday, 27 February 2023 at 15:38
To: Freesurfer support list 
Subject: Re: [Freesurfer] Freeview displaying images in the wrong orientation
Freeview by default will display the image in its original pixel space, without 
re-sampling. You can try the -r flag to enable the resampling like this:

freeview foo.mgz -r -cubic

Ruopeng


On Feb 27, 2023, at 7:04 AM, Nathan Kindred (PGR) 
mailto:n.kindr...@newcastle.ac.uk>> wrote:

External Email - Use Caution

Hi,

Apologies for the delay, please find attached a screenshot of an example image 
in orient_mri and the same image in freeview.

Best,
Nathan

From: 
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
 
mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
 on behalf of Wang, Ruopeng 
mailto:rwa...@mgh.harvard.edu>>
Date: Wednesday, 22 February 2023 at 14:24
To: Freesurfer support list 
mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] Freeview displaying images in the wrong orientation
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Can you send us a screenshot or even better, a sample image file?

Ruopeng

> On Feb 22, 2023, at 7:34 AM, Nathan Kindred (PGR) 
> mailto:n.kindr...@newcastle.ac.uk>> wrote:
>
>External Email - Use Caution
>
> Hi,
>
> When I am displaying certain images in freeview the orientation does not 
> match what is displayed in both orient_mri and SPM. The coronal and 
> horizontal views seems to be okay but the midsagittal view is often wrong 
> with the front of the brain tilted up. How do I get freeview to display the 
> images in the correct orientation?
>
> Thanks,
> Nathan
>
>
> ___
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> Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu>
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Re: [Freesurfer] Freeview displaying images in the wrong orientation

2023-02-27 Thread Wang, Ruopeng 
Freeview by default will display the image in its original pixel space, without 
re-sampling. You can try the -r flag to enable the resampling like this:

freeview foo.mgz -r -cubic

Ruopeng

On Feb 27, 2023, at 7:04 AM, Nathan Kindred (PGR) 
mailto:n.kindr...@newcastle.ac.uk>> wrote:


External Email - Use Caution

Hi,

Apologies for the delay, please find attached a screenshot of an example image 
in orient_mri and the same image in freeview.

Best,
Nathan

From: 
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
 
mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
 on behalf of Wang, Ruopeng 
mailto:rwa...@mgh.harvard.edu>>
Date: Wednesday, 22 February 2023 at 14:24
To: Freesurfer support list 
mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] Freeview displaying images in the wrong orientation
⚠ External sender. Take care when opening links or attachments. Do not provide 
your login details.

Can you send us a screenshot or even better, a sample image file?

Ruopeng

> On Feb 22, 2023, at 7:34 AM, Nathan Kindred (PGR) 
> mailto:n.kindr...@newcastle.ac.uk>> wrote:
>
>External Email - Use Caution
>
> Hi,
>
> When I am displaying certain images in freeview the orientation does not 
> match what is displayed in both orient_mri and SPM. The coronal and 
> horizontal views seems to be okay but the midsagittal view is often wrong 
> with the front of the brain tilted up. How do I get freeview to display the 
> images in the correct orientation?
>
> Thanks,
> Nathan
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu>
> MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" 
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Re: [Freesurfer] Freeview displaying images in the wrong orientation

2023-02-22 Thread Wang, Ruopeng 
Can you send us a screenshot or even better, a sample image file?

Ruopeng

> On Feb 22, 2023, at 7:34 AM, Nathan Kindred (PGR) 
>  wrote:
> 
>External Email - Use Caution
> 
> Hi,
> 
> When I am displaying certain images in freeview the orientation does not 
> match what is displayed in both orient_mri and SPM. The coronal and 
> horizontal views seems to be okay but the midsagittal view is often wrong 
> with the front of the brain tilted up. How do I get freeview to display the 
> images in the correct orientation?
> 
> Thanks,
> Nathan
> 
> 
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


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