Re: [Freesurfer] Name external disk not recognized
Yes, works!!! Thank you Ruthger Righart Le 2014-10-30 15:36, Douglas Greve a écrit : > can you make a symbolic link (ln -s) to the disk and then reference the > symlink instead of the direct path? > > On 10/30/14 10:33 AM, Righart, Ruthger wrote: >> Dear Freesurfers, >> >> Not sure if my question is at the right place here but I'll give it a >> try. >> I have a memory disk with white spaces in the name: Seagate Expansion >> Drive. There is no simple way to rename the disk on my Linux machine. >> >> In Unix shell scripting problems with finding the directory can be >> prevented by putting the whole name in quotation marks, e.g., >> f1=”Seagate Expansion Drive” and then after that calling f1 with >> quotation marks (e.g., cp “$f1”/file.xxx /destination/ ). >> >> However, if I want to use bbregister then it does not recognize the >> quotation marks. For example, behind the flag --reg /”$f1”/fsreg.dat >> Freesurfer tells me that it does not recognize “Expansion” as a flag >> (probably because it still reads the white space in the name). I was >> wondering if there is any simple solution around or if the only option >> seems to try to rename the disk. >> >> Best, >> >> Ruthger >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom > it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you > in error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Name external disk not recognized
Cheap solution, use backticks to evaluate the string, e.g. --reg /`echo $f1`/fsreg.dat On 30.10.2014 15:33, Righart, Ruthger wrote: > Dear Freesurfers, > > Not sure if my question is at the right place here but I'll give it a > try. > I have a memory disk with white spaces in the name: Seagate Expansion > Drive. There is no simple way to rename the disk on my Linux machine. > > In Unix shell scripting problems with finding the directory can be > prevented by putting the whole name in quotation marks, e.g., > f1="Seagate Expansion Drive" and then after that calling f1 with > quotation marks (e.g., cp "$f1"/file.xxx /destination/ ). > > However, if I want to use bbregister then it does not recognize the > quotation marks. For example, behind the flag --reg /"$f1"/fsreg.dat > Freesurfer tells me that it does not recognize "Expansion" as a flag > (probably because it still reads the white space in the name). I was > wondering if there is any simple solution around or if the only option > seems to try to rename the disk. > > Best, > > Ruthger > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer [1] > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline [2] . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. Links: -- [1] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer [2] http://www.partners.org/complianceline ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] Name external disk not recognized
can you make a symbolic link (ln -s) to the disk and then reference the symlink instead of the direct path? On 10/30/14 10:33 AM, Righart, Ruthger wrote: > Dear Freesurfers, > > Not sure if my question is at the right place here but I'll give it a > try. > I have a memory disk with white spaces in the name: Seagate Expansion > Drive. There is no simple way to rename the disk on my Linux machine. > > In Unix shell scripting problems with finding the directory can be > prevented by putting the whole name in quotation marks, e.g., > f1=”Seagate Expansion Drive” and then after that calling f1 with > quotation marks (e.g., cp “$f1”/file.xxx /destination/ ). > > However, if I want to use bbregister then it does not recognize the > quotation marks. For example, behind the flag --reg /”$f1”/fsreg.dat > Freesurfer tells me that it does not recognize “Expansion” as a flag > (probably because it still reads the white space in the name). I was > wondering if there is any simple solution around or if the only option > seems to try to rename the disk. > > Best, > > Ruthger > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
