that's weird. I'm not sure what to do. The log says that it is creating
T1.mgz and not t1.mgz. Can you try this:
cd $SUBJECTS_DIR/subject/mri
mri_normalize -g 1 nu.mgz T1.mgz
this should create T1.mgz and not t1.mgz
doug
tulu wrote:
Dear FS experts and Prof. Douglas N Greve,
Here is log file. I work on other machine under CentOS 5 and FS 4.5 version
but I copy the result from this machine to other machine and find it only
have t1.mgz rather than T1.mgz.
I guess is the language system problem ?
Finally I use a short matlab script to change t1.mgz name as T1.mgz.
Thanks in advance
Best
JLH
-Original Message-
From: Douglas N Greve [mailto:gr...@nmr.mgh.harvard.edu]
Sent: Monday, June 13, 2011 11:01 PM
To: t...@ms36.hinet.net
Cc: freesurfer
Subject: Re: [Freesurfer] make_average_subject error in T1.mgz and t1.mgz
Do you mean your individual subject after running through FS has a file
called t1.mgz and not T1.mgz? Something is definitely wrong there. Can
you send the log file?
doug
t...@ms36.hinet.net wrote:
Dear FS experts,
I use FS5.1 and previous data run on other machine. When I try to
make_average_subjects program, I get error message that it can not get
T1.mgz data from subject folder. When I check my dataset, actually it
has t1.mgz rather than T1.mgz. how could I change the setting from
T1.mgz to t1.mgz
thanks help
JLH
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