Re: [Freesurfer] rtview - loading a tcl file
now the tksurfer command is like this: tksurfer SUBJ lh inflated -aparc -tcl /usr/local/freesurfer/dev/lib/tcl/eccen-flat.tcl -tcl rtview.229508.tcl and rtv.tcl is not applied. From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N. Greve Sent: Friday, July 17, 2020 1:45 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] rtview - loading a tcl file OK, try again:) On 7/17/2020 1:42 PM, Nasr, Shahin,Ph.D. wrote: the tksurfer look correct as below tksurfer SUBJ lh inflated -aparc -tcl /usr/local/freesurfer/dev/lib/tcl/eccen-flat.tcl -tcl rtv.tcl But, eccen-flat.tcl is not executed and I have a blank inflated map. When I drop --tcl rtv.tcl, everything works. From: freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <mailto:dgr...@mgh.harvard.edu> Sent: Friday, July 17, 2020 1:38 PM To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> <mailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] rtview - loading a tcl file sorry, they again On 7/17/2020 1:27 PM, Nasr, Shahin,Ph.D. wrote: tksurfer SUBJ lh inflated -aparc -tcl /usr/local/freesurfer/dev/lib/tcl/eccen-flat.tcl as you can see rtv.tcl is dropped. From: freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <mailto:dgr...@mgh.harvard.edu> Sent: Friday, July 17, 2020 1:22 PM To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> <mailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] rtview - loading a tcl file What is the tksurfer command that is output? On 7/17/2020 1:13 PM, Nasr, Shahin,Ph.D. wrote: Unfortunately it is not working. My command is like this: rtview --s SUBJ --real real.nii --imag imag.nii --eccen --hemi lh --fsig fsig.nii --flat --ss 0 --tcl rtv.tcl rtv.tcl (attached to this email) has just 2 lines as below: labl_remove_all set colscale 8 Thanks From: freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <mailto:dgr...@mgh.harvard.edu> Sent: Friday, July 17, 2020 1:04 PM To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> <mailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] rtview - loading a tcl file ok, try now On 7/17/2020 12:49 PM, Nasr, Shahin,Ph.D. wrote: Thanks. But as far as I see,when I use --tcl , it avoids execution of other tcl files such as eccen-flat.tcl. What I had in my mind was "adding" a tcl. Sorry for all the troubles From: freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <mailto:dgr...@mgh.harvard.edu> Sent: Friday, July 17, 2020 12:32 PM To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> <mailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] rtview - loading a tcl file I just added --tcl to rtview. The new version is in dev On 7/17/2020 12:23 PM, Nasr, Shahin,Ph.D. wrote: Hi Surfers, I was wondering if there is a way to load a tcl file with rtview command. Specifically, I need to change the color table to RYGB, remove the aparc, ... . Thanks ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] rtview - loading a tcl file
OK, try again:) On 7/17/2020 1:42 PM, Nasr, Shahin,Ph.D. wrote: the tksurfer look correct as below tksurfer SUBJ lh inflated -aparc -tcl /usr/local/freesurfer/dev/lib/tcl/eccen-flat.tcl -tcl rtv.tcl But, eccen-flat.tcl is not executed and I have a blank inflated map. When I drop --tcl rtv.tcl, everything works. *From:* freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N. Greve *Sent:* Friday, July 17, 2020 1:38 PM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] rtview - loading a tcl file sorry, they again On 7/17/2020 1:27 PM, Nasr, Shahin,Ph.D. wrote: tksurfer SUBJ lh inflated -aparc -tcl /usr/local/freesurfer/dev/lib/tcl/eccen-flat.tcl as you can see rtv.tcl is dropped. *From:* freesurfer-boun...@nmr.mgh.harvard.edu <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <mailto:dgr...@mgh.harvard.edu> *Sent:* Friday, July 17, 2020 1:22 PM *To:* freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu> <mailto:freesurfer@nmr.mgh.harvard.edu> *Subject:* Re: [Freesurfer] rtview - loading a tcl file What is the tksurfer command that is output? On 7/17/2020 1:13 PM, Nasr, Shahin,Ph.D. wrote: Unfortunately it is not working. My command is like this: rtview --s SUBJ --real real.nii --imag imag.nii --eccen --hemi lh --fsig fsig.nii --flat --ss 0 --tcl rtv.tcl rtv.tcl (attached to this email) has just 2 lines as below: labl_remove_all set colscale 8 Thanks *From:* freesurfer-boun...@nmr.mgh.harvard.edu <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <mailto:dgr...@mgh.harvard.edu> *Sent:* Friday, July 17, 2020 1:04 PM *To:* freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu> <mailto:freesurfer@nmr.mgh.harvard.edu> *Subject:* Re: [Freesurfer] rtview - loading a tcl file ok, try now On 7/17/2020 12:49 PM, Nasr, Shahin,Ph.D. wrote: Thanks. But as far as I see,when I use --tcl , it avoids execution of other tcl files such as eccen-flat.tcl. What I had in my mind was "adding" a tcl. Sorry for all the troubles *From:* freesurfer-boun...@nmr.mgh.harvard.edu <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <mailto:dgr...@mgh.harvard.edu> *Sent:* Friday, July 17, 2020 12:32 PM *To:* freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu> <mailto:freesurfer@nmr.mgh.harvard.edu> *Subject:* Re: [Freesurfer] rtview - loading a tcl file I just added --tcl to rtview. The new version is in dev On 7/17/2020 12:23 PM, Nasr, Shahin,Ph.D. wrote: Hi Surfers, I was wondering if there is a way to load a tcl file with rtview command. Specifically, I need to change the color table to RYGB, remove the aparc, ... . Thanks ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] rtview - loading a tcl file
the tksurfer look correct as below tksurfer SUBJ lh inflated -aparc -tcl /usr/local/freesurfer/dev/lib/tcl/eccen-flat.tcl -tcl rtv.tcl But, eccen-flat.tcl is not executed and I have a blank inflated map. When I drop --tcl rtv.tcl, everything works. From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N. Greve Sent: Friday, July 17, 2020 1:38 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] rtview - loading a tcl file sorry, they again On 7/17/2020 1:27 PM, Nasr, Shahin,Ph.D. wrote: tksurfer SUBJ lh inflated -aparc -tcl /usr/local/freesurfer/dev/lib/tcl/eccen-flat.tcl as you can see rtv.tcl is dropped. From: freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <mailto:dgr...@mgh.harvard.edu> Sent: Friday, July 17, 2020 1:22 PM To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> <mailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] rtview - loading a tcl file What is the tksurfer command that is output? On 7/17/2020 1:13 PM, Nasr, Shahin,Ph.D. wrote: Unfortunately it is not working. My command is like this: rtview --s SUBJ --real real.nii --imag imag.nii --eccen --hemi lh --fsig fsig.nii --flat --ss 0 --tcl rtv.tcl rtv.tcl (attached to this email) has just 2 lines as below: labl_remove_all set colscale 8 Thanks From: freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <mailto:dgr...@mgh.harvard.edu> Sent: Friday, July 17, 2020 1:04 PM To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> <mailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] rtview - loading a tcl file ok, try now On 7/17/2020 12:49 PM, Nasr, Shahin,Ph.D. wrote: Thanks. But as far as I see,when I use --tcl , it avoids execution of other tcl files such as eccen-flat.tcl. What I had in my mind was "adding" a tcl. Sorry for all the troubles From: freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <mailto:dgr...@mgh.harvard.edu> Sent: Friday, July 17, 2020 12:32 PM To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> <mailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] rtview - loading a tcl file I just added --tcl to rtview. The new version is in dev On 7/17/2020 12:23 PM, Nasr, Shahin,Ph.D. wrote: Hi Surfers, I was wondering if there is a way to load a tcl file with rtview command. Specifically, I need to change the color table to RYGB, remove the aparc, ... . Thanks ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] rtview - loading a tcl file
sorry, they again On 7/17/2020 1:27 PM, Nasr, Shahin,Ph.D. wrote: tksurfer SUBJ lh inflated -aparc -tcl /usr/local/freesurfer/dev/lib/tcl/eccen-flat.tcl as you can see rtv.tcl is dropped. *From:* freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N. Greve *Sent:* Friday, July 17, 2020 1:22 PM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] rtview - loading a tcl file What is the tksurfer command that is output? On 7/17/2020 1:13 PM, Nasr, Shahin,Ph.D. wrote: Unfortunately it is not working. My command is like this: rtview --s SUBJ --real real.nii --imag imag.nii --eccen --hemi lh --fsig fsig.nii --flat --ss 0 --tcl rtv.tcl rtv.tcl (attached to this email) has just 2 lines as below: labl_remove_all set colscale 8 Thanks *From:* freesurfer-boun...@nmr.mgh.harvard.edu <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <mailto:dgr...@mgh.harvard.edu> *Sent:* Friday, July 17, 2020 1:04 PM *To:* freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu> <mailto:freesurfer@nmr.mgh.harvard.edu> *Subject:* Re: [Freesurfer] rtview - loading a tcl file ok, try now On 7/17/2020 12:49 PM, Nasr, Shahin,Ph.D. wrote: Thanks. But as far as I see,when I use --tcl , it avoids execution of other tcl files such as eccen-flat.tcl. What I had in my mind was "adding" a tcl. Sorry for all the troubles *From:* freesurfer-boun...@nmr.mgh.harvard.edu <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <mailto:dgr...@mgh.harvard.edu> *Sent:* Friday, July 17, 2020 12:32 PM *To:* freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu> <mailto:freesurfer@nmr.mgh.harvard.edu> *Subject:* Re: [Freesurfer] rtview - loading a tcl file I just added --tcl to rtview. The new version is in dev On 7/17/2020 12:23 PM, Nasr, Shahin,Ph.D. wrote: Hi Surfers, I was wondering if there is a way to load a tcl file with rtview command. Specifically, I need to change the color table to RYGB, remove the aparc, ... . Thanks ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] rtview - loading a tcl file
tksurfer SUBJ lh inflated -aparc -tcl /usr/local/freesurfer/dev/lib/tcl/eccen-flat.tcl as you can see rtv.tcl is dropped. From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N. Greve Sent: Friday, July 17, 2020 1:22 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] rtview - loading a tcl file What is the tksurfer command that is output? On 7/17/2020 1:13 PM, Nasr, Shahin,Ph.D. wrote: Unfortunately it is not working. My command is like this: rtview --s SUBJ --real real.nii --imag imag.nii --eccen --hemi lh --fsig fsig.nii --flat --ss 0 --tcl rtv.tcl rtv.tcl (attached to this email) has just 2 lines as below: labl_remove_all set colscale 8 Thanks From: freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <mailto:dgr...@mgh.harvard.edu> Sent: Friday, July 17, 2020 1:04 PM To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> <mailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] rtview - loading a tcl file ok, try now On 7/17/2020 12:49 PM, Nasr, Shahin,Ph.D. wrote: Thanks. But as far as I see,when I use --tcl , it avoids execution of other tcl files such as eccen-flat.tcl. What I had in my mind was "adding" a tcl. Sorry for all the troubles From: freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <mailto:dgr...@mgh.harvard.edu> Sent: Friday, July 17, 2020 12:32 PM To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> <mailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] rtview - loading a tcl file I just added --tcl to rtview. The new version is in dev On 7/17/2020 12:23 PM, Nasr, Shahin,Ph.D. wrote: Hi Surfers, I was wondering if there is a way to load a tcl file with rtview command. Specifically, I need to change the color table to RYGB, remove the aparc, ... . Thanks ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] rtview - loading a tcl file
What is the tksurfer command that is output? On 7/17/2020 1:13 PM, Nasr, Shahin,Ph.D. wrote: Unfortunately it is not working. My command is like this: rtview --s SUBJ --real real.nii --imag imag.nii --eccen --hemi lh --fsig fsig.nii --flat --ss 0 --tcl rtv.tcl rtv.tcl (attached to this email) has just 2 lines as below: labl_remove_all set colscale 8 Thanks *From:* freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N. Greve *Sent:* Friday, July 17, 2020 1:04 PM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] rtview - loading a tcl file ok, try now On 7/17/2020 12:49 PM, Nasr, Shahin,Ph.D. wrote: Thanks. But as far as I see,when I use --tcl , it avoids execution of other tcl files such as eccen-flat.tcl. What I had in my mind was "adding" a tcl. Sorry for all the troubles *From:* freesurfer-boun...@nmr.mgh.harvard.edu <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <mailto:dgr...@mgh.harvard.edu> *Sent:* Friday, July 17, 2020 12:32 PM *To:* freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu> <mailto:freesurfer@nmr.mgh.harvard.edu> *Subject:* Re: [Freesurfer] rtview - loading a tcl file I just added --tcl to rtview. The new version is in dev On 7/17/2020 12:23 PM, Nasr, Shahin,Ph.D. wrote: Hi Surfers, I was wondering if there is a way to load a tcl file with rtview command. Specifically, I need to change the color table to RYGB, remove the aparc, ... . Thanks ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] rtview - loading a tcl file
Unfortunately it is not working. My command is like this: rtview --s SUBJ --real real.nii --imag imag.nii --eccen --hemi lh --fsig fsig.nii --flat --ss 0 --tcl rtv.tcl rtv.tcl (attached to this email) has just 2 lines as below: labl_remove_all set colscale 8 Thanks From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N. Greve Sent: Friday, July 17, 2020 1:04 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] rtview - loading a tcl file ok, try now On 7/17/2020 12:49 PM, Nasr, Shahin,Ph.D. wrote: Thanks. But as far as I see,when I use --tcl , it avoids execution of other tcl files such as eccen-flat.tcl. What I had in my mind was "adding" a tcl. Sorry for all the troubles From: freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <mailto:dgr...@mgh.harvard.edu> Sent: Friday, July 17, 2020 12:32 PM To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> <mailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] rtview - loading a tcl file I just added --tcl to rtview. The new version is in dev On 7/17/2020 12:23 PM, Nasr, Shahin,Ph.D. wrote: Hi Surfers, I was wondering if there is a way to load a tcl file with rtview command. Specifically, I need to change the color table to RYGB, remove the aparc, ... . Thanks ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer rtv.tcl Description: rtv.tcl ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] rtview - loading a tcl file
ok, try now On 7/17/2020 12:49 PM, Nasr, Shahin,Ph.D. wrote: Thanks. But as far as I see,when I use --tcl , it avoids execution of other tcl files such as eccen-flat.tcl. What I had in my mind was "adding" a tcl. Sorry for all the troubles *From:* freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N. Greve *Sent:* Friday, July 17, 2020 12:32 PM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] rtview - loading a tcl file I just added --tcl to rtview. The new version is in dev On 7/17/2020 12:23 PM, Nasr, Shahin,Ph.D. wrote: Hi Surfers, I was wondering if there is a way to load a tcl file with rtview command. Specifically, I need to change the color table to RYGB, remove the aparc, ... . Thanks ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] rtview - loading a tcl file
Thanks. But as far as I see,when I use --tcl , it avoids execution of other tcl files such as eccen-flat.tcl. What I had in my mind was "adding" a tcl. Sorry for all the troubles From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N. Greve Sent: Friday, July 17, 2020 12:32 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] rtview - loading a tcl file I just added --tcl to rtview. The new version is in dev On 7/17/2020 12:23 PM, Nasr, Shahin,Ph.D. wrote: Hi Surfers, I was wondering if there is a way to load a tcl file with rtview command. Specifically, I need to change the color table to RYGB, remove the aparc, ... . Thanks ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] rtview - loading a tcl file
I just added --tcl to rtview. The new version is in dev On 7/17/2020 12:23 PM, Nasr, Shahin,Ph.D. wrote: Hi Surfers, I was wondering if there is a way to load a tcl file with rtview command. Specifically, I need to change the color table to RYGB, remove the aparc, ... . Thanks ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
