Hi Carl,
Thank you for your quite extensive answer! I finally managed to find the line
in universe_wsgi.ini that caused the problem.
The moment I UNCOMMENT the following line:
#log_actions = True
I no longer can see the histories. The moment I comment this line again
everything works fine.
Anyway, this exercise resulted in a clean and updated universe_wsgi.ini file
and the problem is solved now!
Thank you for your help!
Regards,
Dr. Philip de Groot Ph.D.
Bioinformatics Researcher
Wageningen University / TIFN
Nutrigenomics Consortium
Nutrition, Metabolism Genomics Group
Division of Human Nutrition
PO Box 8129, 6700 EV Wageningen
Visiting Address: Erfelijkheidsleer: De Valk, Building 304
Dreijenweg 2, 6703 HA Wageningen
Room: 0052a
T: +31-317-485786
F: +31-317-483342
E-mail: philip.degr...@wur.nlmailto:philip.degr...@wur.nl
Internet: http://www.nutrigenomicsconsortium.nl
http://humannutrition.wur.nl/
https://madmax.bioinformatics.nl/
From: Carl Eberhard [carlfeberh...@gmail.com]
Sent: 11 July 2013 16:34
To: Groot, Philip de
Cc: galaxy-dev@lists.bx.psu.edu; ambrose.andong...@rothamsted.ac.uk
Subject: Re: Strange behaviour with galaxy history
Hello, Phillip
I haven't been able to replicate this yet (https://trello.com/c/LdLlJDo9). Do
you see any errors in your log near or after GET /history/list HTTP/1.1?
Shane Sturrock worked around this problem by updating his universe_wsgi.ini
file (if I understand his procedure):
1. Make a backup of your universe_wsgi.ini file (for example, copy it to your
home directory)
2. Rename the universe_wsgi.ini file in your galaxy installation something like
'universe_wsgi.ini.saved'
3. Rename the most recent universe_wsgi.ini.sample file (that came with the
latest update) to universe_wsgi.ini.
4. Copy any custom settings for your server from your older
universe_wsgi.ini.saved file to the newer universe_wsgi.ini file
5. Start Galaxy
That seemed to work for Shane. Ambrose re-installed and reconnected his
database. Neither is a solution to the original cause, but you may want to try
them while we investigate.
Thanks,
Carl
On Thu, Jul 11, 2013 at 5:48 AM, Groot, Philip de
philip.degr...@wur.nlmailto:philip.degr...@wur.nl wrote:
Hi,
First of all, I apologize for interrupting into this discussion, but I have
exactly the same problem and did not find a solution yet. And no: prefix and
cookies are set properly in our particular setting (as /)! This is not the
cause...
I think that the problem occurred with the May Galaxy update, but it was
unnoticed for a while. Problem is that the histories of all users are not
listed when being asked for it within Galaxy. Only the current history is
present for every user. In addition, when I login using another computer, a
different history is being depicted (which suggest a cookie issue but I just
cannot find it). Copying the current history works but the copy is not listed
either.
In the postgres database, the histories are properly listed. If I type in the
proper history name in Galaxy, I even get the stored history back! So this all
works, but users cannot see their histories. The java console does not reveal
any problem. prefix and cookie are set properly (I think). So I don't know.
Does anyone have any clue on how to tackle this issue? I am happy to provide
more information if needed!
Thanks!
Dr. Philip de Groot Ph.D.
Bioinformatics Researcher
Wageningen University / TIFN
Nutrigenomics Consortium
Nutrition, Metabolism Genomics Group
Division of Human Nutrition
PO Box 8129, 6700 EV Wageningen
Visiting Address: Erfelijkheidsleer: De Valk, Building 304
Dreijenweg 2, 6703 HA Wageningen
Room: 0052a
T: +31-317-485786tel:%2B31-317-485786
F: +31-317-483342tel:%2B31-317-483342
E-mail:
philip.degr...@wur.nlmailto:philip.degr...@wur.nlmailto:philip.degr...@wur.nlmailto:philip.degr...@wur.nl
Internet:
http://www.nutrigenomicsconsortium.nlhttp://www.nutrigenomicsconsortium.nl/
http://humannutrition.wur.nl/
https://madmax.bioinformatics.nl/
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