[galaxy-dev] 2 RNAseq files in Main queue 1 week to map w/Top hat
Greetings, I have had two RNAseq files in queue to map with Top hat in Galaxy Main since last Thursday (History began Sept 19). I got word that NGS was stalled, my jobs were mistakenly believed to be moving afterwards when they weren't- but are now under review again. It has been a week now and the 2 mapping jobs are still waiting to run. Can you tell me whether I should delete the jobs and re-run them as new? Is there a problem with my trimmed dataset? My concern is that these jobs are still believed to be moving as was indicated by one of your galaxy stewards, but are actually still stalled in space. One week is a long tme to wait for local jobs, no? thank you very much for your help https://main.g2.bx.psu.edu/u/trstueve/h/rnaseqjegcsc3wkrun130924-1 https://main.g2.bx.psu.edu/history/sharing# Theresa Ryan Stueve 510-225-8894 (text better than voicemail for quick response) -- Theresa Ryan Stueve 510-225-8894 (text better than voicemail for quick response) ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] 2 RNAseq files in queue to map w/Tophat in Main since last Thursday, please advise
Greetings, I have had two RNAseq files in queue to map with Top hat in Galaxy Main since last Thursday (History began Sept 19). Yesterday I got word that NGS was stalled, my jobs were mistakenly believed to be moving afterwards when they weren't- but are now under review again. This morning the 2 mapping jobs are still waiting to run. I have a data review meeting this thursday and hope you can advise me on contingency plans to get these 2 mapping jobs running. Can you tell me whether I should delete the jobs and re-run them as new? My concern is that they are still believed to be moving as was indicated by one of your galaxy stewards, but are actually still stalled in space. I have a data meeting Thursday (10/4) and hoped to be ready by starting this project Sept 19th. Can you tell me if you are aware of another public Galaxy server (other than Main) with 'Top Hat' for mapping RNAseq data? I joined Cistrome (Harvard) but they only have Cufflinks (for previously mapped RNAseq analysis) below is my history thank you very much for your help https://main.g2.bx.psu.edu/u/trstueve/h/rnaseqjegcsc3wkrun130924-1 https://main.g2.bx.psu.edu/history/sharing# Theresa Ryan Stueve 510-225-8894 (text better than voicemail for quick response) ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] RNAseq Map with Top Hat job in queue 4 days, 'waiting to run
Greetings, I would like to map some RNAseq data in Top hat in Galaxy Main- I only have 2 files but both have have been in queue 'waiting to run' since last Thursday (9/26)? I have a data meeting this Thursday and am gonna get trounced can you advise? history is below is there another galaxy I can try perhaps? I do appreciate that you all are expanding the universe -- Theresa Ryan Stueve 510-225-8894 (text better than voicemail for quick response) ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] 2 RNAseq jobs in queue to map with Tophat 48 hours in Galaxy Main
Greetings my name is Theresa Stueve; I am a researcher at USC (galaxy mailing list subscription at there...@usc.edu or tstu...@gmail.com). I have had 2 RNAseq jobs in queue to map with Tophat to 'hg19 ful' in Galaxy Main for 48 hours (queued Sept 27). Can you advise? My history is linked below help is much appreciated https://main.g2.bx.psu.edu/u/trstueve/h/rnaseqjegcsc3wkrun130924 -- Theresa Ryan Stueve 510-225-8894 (text better than voicemail for quick response) ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
