Re: [galaxy-dev] Galaxy behind a authenticated proxy Server

[Timothy Carr]

Hi

You do not specify which proxy server it is, for example MS TMG ( CNTLM 
auth ) / Squid. For CNTLM based authentication you could make use of the 
CNTLM application in most repositories to run a local proxy instance and 
configure your galaxy user environment with 
http_proxy=http://localhost:8080. This is only if you need specific 
stuff you would like your galaxy environment to make use of. For squid 
you could make use of other methods.


However, if you are navigating via the Get Data section, BioMart 
Central Server, your authenticated browser will retrieve the data of the 
BioMart server into iframe.


Hope this helps.

Cheers



On 13/08/2013 11:16, Jurgens de Bruin wrote:

To All,

I am in the process of setting-up a local galaxy server.

To access the internet we are required to go trough a authenticated 
proxy server before any web-services can be accessed. So my questions 
is how will galaxy handle this?



--
Regards/Groete/Mit freundlichen Grüßen/recuerdos/meilleures salutations/
distinti saluti/siong/duì yú/??

Jurgens de Bruin


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[galaxy-dev] NFS noac option

[Timothy Carr]

Hi All,

I've setup the Galaxy application on a standard NFS mount without the 
'noac' option and then the galaxy datasets on a enabled 'noac' NFS 
mount. I updated the universe configuration to reflect the updated 
locations. The performance however to the 'noac' mount is really poor, 
something like 700kb/sec on a 1GB interface.


Is this the only option available or have alternatives been recommended 
to improve the speed ?


Regards

Timothy Carr
University of Cape Town



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