Re: [galaxy-dev] workflow Editor
Hi James, if i want to create editor only and tools are not required , can i get some documents related with galaxy editor . you can send me module name in galaxy . i can go through for creating editor . Regards shashi On Mon, 2013-01-28 at 10:55 -0500, James Taylor wrote: > The client side of the workflow editor is in javascript, using a mix > of HTML5 Canvas and DOM elements. It communicates with the server > using JSON. The server side is written in Python. The editor could be > decoupled and reused, however there are some details that are fairly > Galaxy specific right now (particularly how tool states -- the values > of the various input parameters -- are encoded). > > -- > James Taylor, Assistant Professor, Biology/CS, Emory University > > > On Mon, Jan 28, 2013 at 5:17 AM, wrote: > > Hi, > > > > I want to know about workflow editor and how it works internally? what > > type of canvas editor are you using ? doest it support only python > > environment ? > > if you have any documents related with ,can i get it . > > > > Regards > > shashi > > > > --- > > > > This e-mail is for the sole use of the intended recipient(s) and may > > contain confidential and privileged information. If you are not the > > intended recipient, please contact the sender by reply e-mail and destroy > > all copies and the original message. Any unauthorized review, use, > > disclosure, dissemination, forwarding, printing or copying of this email > > is strictly prohibited and appropriate legal action will be taken. > > --- > > > > ___ > > Please keep all replies on the list by using "reply all" > > in your mail client. To manage your subscriptions to this > > and other Galaxy lists, please use the interface at: > > > > http://lists.bx.psu.edu/ > > Email secured by Check Point > --- This e-mail is for the sole use of the intended recipient(s) and may contain confidential and privileged information. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies and the original message. Any unauthorized review, use, disclosure, dissemination, forwarding, printing or copying of this email is strictly prohibited and appropriate legal action will be taken. --- ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] workflow Editor
Hi, I want to know about workflow editor and how it works internally? what type of canvas editor are you using ? doest it support only python environment ? if you have any documents related with ,can i get it . Regards shashi --- This e-mail is for the sole use of the intended recipient(s) and may contain confidential and privileged information. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies and the original message. Any unauthorized review, use, disclosure, dissemination, forwarding, printing or copying of this email is strictly prohibited and appropriate legal action will be taken. --- ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] List of browsers which supports galaxy
Hi, some browser are not supporting galaxy. if galaxy is supporting to specific version of browser in mozila ,IE,chrome,safari etc , can i get version number in mozila ,IE,chrome? if i have downloaded any new version of galaxy ,where will i get the list of supporting browser ? Regards shashi --- This e-mail is for the sole use of the intended recipient(s) and may contain confidential and privileged information. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies and the original message. Any unauthorized review, use, disclosure, dissemination, forwarding, printing or copying of this email is strictly prohibited and appropriate legal action will be taken. --- ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] Adding a new tag in galaxy
Hi All, I installed galaxy on local machine and i want to add a new tag in tool xml file .docs for adding new tag is not available in galaxy .if any one is working on it, plz help me in finding the solution .. Regards shashi --- This e-mail is for the sole use of the intended recipient(s) and may contain confidential and privileged information. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies and the original message. Any unauthorized review, use, disclosure, dissemination, forwarding, printing or copying of this email is strictly prohibited and appropriate legal action will be taken. --- ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] How to add tag in tool xml file
Hi, How to add a new tag in tool_xml file.is there any possibility to add a tag in tool xml file ? Regards shashi --- This e-mail is for the sole use of the intended recipient(s) and may contain confidential and privileged information. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies and the original message. Any unauthorized review, use, disclosure, dissemination, forwarding, printing or copying of this email is strictly prohibited and appropriate legal action will be taken. --- ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] Adding the tag in tool xml file
Hi, is it possible to add the tag in tool_xml_file ? how can i add new tag in tool_xml_file ? if anyone is working on this , guide me Regards shashi --- This e-mail is for the sole use of the intended recipient(s) and may contain confidential and privileged information. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies and the original message. Any unauthorized review, use, disclosure, dissemination, forwarding, printing or copying of this email is strictly prohibited and appropriate legal action will be taken. --- ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] how to add new Xml tag in tool xml file
Hi, I am using my local instance of galaxy . I want to create a tag which will open an new window in galaxy. How can i create a new tag in tool_xml_file ? for this any modification is required in any file of galaxy ? Regards shashi --- This e-mail is for the sole use of the intended recipient(s) and may contain confidential and privileged information. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies and the original message. Any unauthorized review, use, disclosure, dissemination, forwarding, printing or copying of this email is strictly prohibited and appropriate legal action will be taken. --- ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] how to create a new tag in tool_xml_file of galaxy
Hi, I am using my local instance of galaxy . I want to create a tag which will open an new window in galaxy. How can i create a new tag in tool_xml_file ? for this any modification is required in any file of galaxy ? Regards shashi --- This e-mail is for the sole use of the intended recipient(s) and may contain confidential and privileged information. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies and the original message. Any unauthorized review, use, disclosure, dissemination, forwarding, printing or copying of this email is strictly prohibited and appropriate legal action will be taken. --- ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] Problem inGetting user name
Hi, How wil i get the stored user name in galaxy .I want to use this name in mako page.I am modifying my local instance of galaxy. Regards shashi --- This e-mail is for the sole use of the intended recipient(s) and may contain confidential and privileged information. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies and the original message. Any unauthorized review, use, disclosure, dissemination, forwarding, printing or copying of this email is strictly prohibited and appropriate legal action will be taken. --- ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Add new mako apge in galaxy front end
Hi jeremy, Thanks for Reply.. Regards shashi On Tue, 2012-06-05 at 08:27 -0400, Jeremy Goecks wrote: > Shashi, > > Here's our recommended approach: > > (1) create the mako page in /templates or in an appropriate subdirectory > > (2) write a controller method that processes inputs and then fills in the > template. For example, from user/dbkeys: > > return trans.fill_template( 'user/dbkeys.mako', > user=user, > dbkeys=dbkeys, > message=message, > > installed_len_files=self.installed_len_files, > lines_skipped=lines_skipped, > fasta_hdas=fasta_hdas, > use_panels=kwds.get( 'use_panels', False > ) ) > > > Best, > J. > > On Jun 5, 2012, at 1:47 AM, sshashi wrote: > > > Hi Nate, > > > > I am using local instance galaxy in my system . I want add one new mako > > page in galaxy .how can i add in galaxy ? > > > > Regards > > shashi > > > > > > --- > > > > This e-mail is for the sole use of the intended recipient(s) and may > > contain confidential and privileged information. If you are not the > > intended recipient, please contact the sender by reply e-mail and destroy > > all copies and the original message. Any unauthorized review, use, > > disclosure, dissemination, forwarding, printing or copying of this email > > is strictly prohibited and appropriate legal action will be taken. > > --- > > > > ___ > > Please keep all replies on the list by using "reply all" > > in your mail client. To manage your subscriptions to this > > and other Galaxy lists, please use the interface at: > > > > http://lists.bx.psu.edu/ > > --- This e-mail is for the sole use of the intended recipient(s) and may contain confidential and privileged information. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies and the original message. Any unauthorized review, use, disclosure, dissemination, forwarding, printing or copying of this email is strictly prohibited and appropriate legal action will be taken. --- ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] galaxy
Hi Nate, I want to add new page in galaxy . My motive is that when i click on a link of galaxy , it should open a new page . can u share any doc about adding new page . I want to add new page like mako file which contains html and python code . Regards shashi --- This e-mail is for the sole use of the intended recipient(s) and may contain confidential and privileged information. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies and the original message. Any unauthorized review, use, disclosure, dissemination, forwarding, printing or copying of this email is strictly prohibited and appropriate legal action will be taken. --- ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] Add new mako apge in galaxy front end
Hi Nate, I am using local instance galaxy in my system . I want add one new mako page in galaxy .how can i add in galaxy ? Regards shashi --- This e-mail is for the sole use of the intended recipient(s) and may contain confidential and privileged information. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies and the original message. Any unauthorized review, use, disclosure, dissemination, forwarding, printing or copying of this email is strictly prohibited and appropriate legal action will be taken. --- ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
