[galaxy-dev] Broad IGV

2011-10-24 Thread Chorny, Ilya 
I saw some posts and a commit which allows one to use broad IGV within galaxy 
but I do not see a tool, a link, or an option. Can someone explain how to set 
that up?

Thanks,

Ilya


Ilya Chorny Ph.D.
Bioinformatics Scientist I
Illumina, Inc.
9885 Towne Centre Drive
San Diego, CA 92121
Work: 858.202.4582
Email: icho...@illumina.commailto:icho...@illumina.com
Website: www.illumina.comhttp://www.illumina.com


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Re: [galaxy-dev] Broad IGV

2011-10-24 Thread Daniel Blankenberg 
Hi Ilya,

In datatypes_conf.xml, under the bam datatype uncomment out the display 
application for igv/bam (display file=igv/bam.xml /). Links will then 
appear for bam history items.


Thanks for using Galaxy,

Dan


On Oct 24, 2011, at 5:50 PM, Chorny, Ilya wrote:

 I saw some posts and a commit which allows one to use broad IGV within galaxy 
 but I do not see a tool, a link, or an option. Can someone explain how to set 
 that up?
  
 Thanks,
  
 Ilya
  
  
 Ilya Chorny Ph.D.
 Bioinformatics Scientist I
 Illumina, Inc.
 9885 Towne Centre Drive
 San Diego, CA 92121
 Work: 858.202.4582
 Email: icho...@illumina.com
 Website: www.illumina.com
  
  
 ___
 Please keep all replies on the list by using reply all
 in your mail client.  To manage your subscriptions to this
 and other Galaxy lists, please use the interface at:
 
  http://lists.bx.psu.edu/

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