GALAXY TOOL ERROR REPORT
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This error report was sent from the Galaxy instance hosted on the server
"127.0.0.1:7070"
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This is in reference to dataset id 13 from history id 6
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You should be able to view the history containing the related history item
13: FastQC_SC2T252P15_S1_L001_R1_001.fastq.html
by logging in as a Galaxy admin user to the Galaxy instance referenced above
and pointing your browser to the following link.
127.0.0.1:7070/history/view?id=e03374982e5c9d8a
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The user 'yaxi...@gmail.com' provided the following information:
This was returned upon attempt to run FasQC on one Illumina gromed dataset.
Local galaxy install on RHEL58
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job id: 7
tool id: fastqc
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job command line:
python /home/galaxy/galaxy-dist/tools/rgenetics/rgFastQC.py -i
"/home/GalaxyUpload/SC2T252P15_S1_L001_R1_001.fastq" -d
"/home/galaxy/galaxy-dist/database/job_working_directory/000/7/dataset_13_files"
-o "/home/galaxy/galaxy-dist/database/files/000/dataset_13.dat" -n "FastQC" -f
"fastq" -j "SC2T252P15_S1_L001_R1_001.fastq" -e
"/home/galaxy/galaxy-dist/tool-data/shared/jars/FastQC/fastqc"
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job stderr:
Traceback (most recent call last):
File "/home/galaxy/galaxy-dist/tools/rgenetics/rgFastQC.py", line 158, in
<module>
assert os.path.isfile(opts.executable),'##rgFastQC.py error - cannot find
executable %s' % opts.executable
AssertionError: ##rgFastQC.py error - cannot find executable
/home/galaxy/galaxy-dist/tool-data/shared/jars/FastQC/fastqc
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job stdout:
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job info:
None
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job traceback:
None
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(This is an automated message).
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