Again, solved my own problem.
diff -r 949e4f5fa03a tools/plotting/scatterplot.py
--- a/tools/plotting/scatterplot.py Mon Aug 29 14:42:04 2011 -0400
+++ b/tools/plotting/scatterplot.py Wed Oct 12 10:35:58 2011 -0400
@@ -20,7 +20,8 @@
xlab = sys.argv[6]
ylab = sys.argv[7]
-matrix = []
+xarray = []
+yarray = []
skipped_lines = 0
first_invalid_line = 0
invalid_value = ''
@@ -57,12 +58,13 @@
first_invalid_line = i+1
if valid:
-matrix.append( row )
+xarray.append ( row[0] )
+yarray.append ( row[1] )
if skipped_lines i:
try:
r.pdf( out_fname, 8, 8 )
-r.plot( array( matrix ), type=p, main=title, xlab=xlab,
ylab=ylab, col=blue, pch=19 )
+r.plot( xarray, yarray, type=p, main=title, xlab=xlab,
ylab=ylab, col=blue, pch=19 )
r.dev_off()
except Exception, exc:
stop_err( %s %str( exc ) )
David
On Oct 6, 2011, at 10:16 AM, David Hoover wrote:
Hi,
The scatterplot tool is broken in the distributed version. It works on the
main Galaxy server, but on our local installation it gives this error:
An error occurred running this job:Warning messages:
1: In min(x) : no non-missing arguments to min; returning Inf
2: In max(x) : no non-missing arguments to max; returning -Inf
3: In min(x) : no non-missing arguments to min; returning Inf
4: In max(x) : no non-missing arguments to max; re
Any ideas?
David Hoover
Helix Systems Staff
SCB/CIT/NIH
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