Re: [galaxy-dev] Writing test for dataset collection
thanks guys, very helpful =) On Mon, Jul 11, 2016 at 3:39 PM, Martin Čech wrote: > Hi Cristel, > > for a start I please have a look at > http://planemo.readthedocs.io/en/latest/writing_advanced.html#test-driven-development > and > let us know if you have further questions. The documentation regarding this > is a still bit scarce, I am sorry. > > Martin > > On Mon, Jul 11, 2016 at 3:24 PM Cristel Thomas > wrote: > >> Dear galaxy developers, >> >> Can someone point me to a resource explaining how to write the test >> section of the xml for tools dealing with dataset collections? as input as >> well as output. >> >> Thanks much, >> Cris >> ___ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> https://lists.galaxyproject.org/ >> >> To search Galaxy mailing lists use the unified search at: >> http://galaxyproject.org/search/mailinglists/ > > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Writing test for dataset collection
Hi Cristel, for a start I please have a look at http://planemo.readthedocs.io/en/latest/writing_advanced.html#test-driven-development and let us know if you have further questions. The documentation regarding this is a still bit scarce, I am sorry. Martin On Mon, Jul 11, 2016 at 3:24 PM Cristel Thomas wrote: > Dear galaxy developers, > > Can someone point me to a resource explaining how to write the test > section of the xml for tools dealing with dataset collections? as input as > well as output. > > Thanks much, > Cris > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Writing test for dataset collection
Hi Christel, here you can find a lot of tests: https://github.com/galaxyproject/galaxy/blob/dev/test/functional/tools/collection_creates_list.xml This folder is a treasure for small little examples. Hope this will help! Cheers, Bjoern Am 11.07.2016 um 21:24 schrieb Cristel Thomas: > Dear galaxy developers, > > Can someone point me to a resource explaining how to write the test section > of the xml for tools dealing with dataset collections? as input as well as > output. > > Thanks much, > Cris > > > > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] Writing test for dataset collection
Dear galaxy developers, Can someone point me to a resource explaining how to write the test section of the xml for tools dealing with dataset collections? as input as well as output. Thanks much, Cris ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] Motif Alignment and Search Tool - MAST
Hello, I was hoping to use MAST, a part of the MEME Suite collection of tools, in Galaxy: http://meme-suite.org/doc/mast.html?man_type=web While I have found the MEME Suite, I have been unable to locate the specific MAST tool in the tool shed. I was wondering if it was currently available for use in Galaxy? Thanks, Kirill Pankov ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
