Re: [galaxy-dev] Galaxy Proteomics Hackathon

2016-09-09 Thread Björn Grüning 
Hi Léo,

this would be awesome! Thanks for the offer!
Bjoern

Am 09.09.2016 um 22:41 schrieb Léo Biscassi:
> I don't know anything about GalaxyP, but I think I can help a little bit
> with conda packages, if that works for you I can join to hackathon.
> 
> Best regards
> 
> On Fri, Sep 9, 2016 at 12:01 PM Björn Grüning  > wrote:
> 
> Hi all!
> 
> I would like to spread the news from the GalaxyP team about a new
> hackthon. Please join and help us if you have some time!
> 
> 
> *
> 
> The first Galaxy-P CONDA hackathon will be held on September 27th
> and 28th.
> Galaxy-P and proteomics tool developers will participate in this
> hackathon to "CONDA-package" some of the prioritized proteomics tools
> within Galaxy. The hackathon will be an online event which will start
> with an introduction to Galaxy structure and CONDA packaging by Bjoern
> Gruening.
> 
> https://github.com/galaxyproteomics/tools-galaxyp/issues/57
> 
> Details soon. Please see if you would like to publicize this.
> 
> Thanks and Regards,
> Pratik
> ___
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> 
> -- 
> Best regards, *
> *
> *Léo Biscassi*
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Re: [galaxy-dev] Galaxy Proteomics Hackathon

2016-09-09 Thread Léo Biscassi 
I don't know anything about GalaxyP, but I think I can help a little bit
with conda packages, if that works for you I can join to hackathon.

Best regards

On Fri, Sep 9, 2016 at 12:01 PM Björn Grüning 
wrote:

> Hi all!
>
> I would like to spread the news from the GalaxyP team about a new
> hackthon. Please join and help us if you have some time!
>
>
> *
>
> The first Galaxy-P CONDA hackathon will be held on September 27th and 28th.
> Galaxy-P and proteomics tool developers will participate in this
> hackathon to "CONDA-package" some of the prioritized proteomics tools
> within Galaxy. The hackathon will be an online event which will start
> with an introduction to Galaxy structure and CONDA packaging by Bjoern
> Gruening.
>
> https://github.com/galaxyproteomics/tools-galaxyp/issues/57
>
> Details soon. Please see if you would like to publicize this.
>
> Thanks and Regards,
> Pratik
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/

-- 
Best regards,
*Léo Biscassi*
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[galaxy-dev] Galaxy Proteomics Hackathon

2016-09-09 Thread Björn Grüning 
Hi all!

I would like to spread the news from the GalaxyP team about a new
hackthon. Please join and help us if you have some time!


*

The first Galaxy-P CONDA hackathon will be held on September 27th and 28th.
Galaxy-P and proteomics tool developers will participate in this
hackathon to "CONDA-package" some of the prioritized proteomics tools
within Galaxy. The hackathon will be an online event which will start
with an introduction to Galaxy structure and CONDA packaging by Bjoern
Gruening.

https://github.com/galaxyproteomics/tools-galaxyp/issues/57

Details soon. Please see if you would like to publicize this.

Thanks and Regards,
Pratik
___
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Re: [galaxy-dev] delete user and all trace of user

2016-09-09 Thread Martin Čech 
Hi Edgar,

the 'active' column won't help you, that relates to the account activation
feature vie email.

Your other approach seems more viable. I would try deleting the smallest
subset of constrained entries - but unless you learn/understand the logic
behind the rows being deleted you are risking to end in an inconsistent
state. I would also limit this on the 'deleted' users only as a purged user
does not have to be deleted I think.

Martin

On Fri, Sep 9, 2016 at 7:41 AM Fernandez Edgar 
wrote:

> Hello Martin,
>
>
>
> Thanks for the answer.
>
> I was hoping to find a way to remove the user or at the very least hide
> them from the ADMIN user page.
>
>
>
> After a small research in the database, I found a column called "ACTIVE"
> in the galaxy_user table.
>
> Can that column help me at all?
>
>
>
> OR
>
>
>
> I could write a script that search all the deleted/purged users, picks up
> their ID in the galaxy_user table and destroys all the lines in all the
> tables that has that FOREIGN KEY???
>
>
>
> Let me know what you think…
>
>
>
> *Edgar Fernandez*
>
> System Administrator (Linux)
>
> Direction Générale des Technologies de l'Information et de la Communication
>
> *Université de Montréal*
>
>
>
> PAVILLON ROGER-GAUDRY, bureau X-210
>
> (  Bur. : *1-514-343-6111 poste 16568*
>
>
>
>
>
> *From:* Martin Čech [mailto:mar...@bx.psu.edu]
> *Sent:* September-08-16 12:30 PM
> *To:* Fernandez Edgar ;
> galaxy-...@bx.psu.edu
> *Subject:* Re: [galaxy-dev] delete user and all trace of user
>
>
>
> Hi Edgar,
>
>
>
> there is no built-in way in Galaxy to remove a user completely. 'Deleting'
> just flips the flag in the DB and 'purging' is related to their
> data/histories. You need to access the DB directly if you want to
> completely remove a user. Beware that there might be constraints/relations
> attached to the user row.
>
>
>
> Thanks for using Galaxy,
>
>
>
> Martin
>
>
>
> On Thu, Sep 8, 2016 at 12:22 PM Fernandez Edgar <
> edgar.fernan...@umontreal.ca> wrote:
>
> Hello gents!
>
>
>
> I’ve successfully got my version 16.04 up and running and everything is
> still there (user, groups roles, data and tools).
>
> Unfortunately , I’m still having a problem with deleting a user. I’ve
> purge him and then I deleted him.
>
> but, he still shows up in my list of users as "purged".
>
>
>
> Is there a way to completely remove him from galaxy?
>
> Do I need to run a script in a cron job to clean my galaxy periodically?
>
>
>
> Thanks in advance!
>
>
>
> *Edgar Fernandez*
>
> System Administrator (Linux)
>
> Direction Générale des Technologies de l'Information et de la Communication
>
> *Université de Montréal*
>
>
>
> PAVILLON ROGER-GAUDRY, bureau X-210
>
> (  Bur. : *1-514-343-6111 poste 16568*
>
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
>
>
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Re: [galaxy-dev] delete user and all trace of user

2016-09-09 Thread Fernandez Edgar 
Hello Martin,

Thanks for the answer.
I was hoping to find a way to remove the user or at the very least hide them 
from the ADMIN user page.

After a small research in the database, I found a column called "ACTIVE" in the 
galaxy_user table.
Can that column help me at all?

OR

I could write a script that search all the deleted/purged users, picks up their 
ID in the galaxy_user table and destroys all the lines in all the tables that 
has that FOREIGN KEY???

Let me know what you think…

Edgar Fernandez
System Administrator (Linux)
Direction Générale des Technologies de l'Information et de la Communication
Université de Montréal

PAVILLON ROGER-GAUDRY, bureau X-210
•  Bur. : 1-514-343-6111 poste 16568


From: Martin Čech [mailto:mar...@bx.psu.edu]
Sent: September-08-16 12:30 PM
To: Fernandez Edgar ; galaxy-...@bx.psu.edu
Subject: Re: [galaxy-dev] delete user and all trace of user

Hi Edgar,

there is no built-in way in Galaxy to remove a user completely. 'Deleting' just 
flips the flag in the DB and 'purging' is related to their data/histories. You 
need to access the DB directly if you want to completely remove a user. Beware 
that there might be constraints/relations attached to the user row.

Thanks for using Galaxy,

Martin

On Thu, Sep 8, 2016 at 12:22 PM Fernandez Edgar 
mailto:edgar.fernan...@umontreal.ca>> wrote:
Hello gents!

I’ve successfully got my version 16.04 up and running and everything is still 
there (user, groups roles, data and tools).
Unfortunately , I’m still having a problem with deleting a user. I’ve purge him 
and then I deleted him.
but, he still shows up in my list of users as "purged".

Is there a way to completely remove him from galaxy?
Do I need to run a script in a cron job to clean my galaxy periodically?

Thanks in advance!

Edgar Fernandez
System Administrator (Linux)
Direction Générale des Technologies de l'Information et de la Communication
Université de Montréal

PAVILLON ROGER-GAUDRY, bureau X-210
•  Bur. : 1-514-343-6111 poste 16568
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