Re: [galaxy-dev] Galaxy Administrator Training, Jan 28 - Feb 1, Penn State University

2018-11-26 Thread Dave Clements 
Hi All,

Just a reminder that registration for *the 2019 Galaxy Admin Training
* is still open.
Registering now avoids the 45 to 60% price increase when full prices take
effect. The detailed agendas for the basic and advanced sessions are now
available online
 as is
the instructor
list .

We hope to see you in January!


On Wed, Sep 19, 2018 at 12:17 PM Dave Clements 
wrote:

> Hello all,
>
> We are pleased to announce that* the 2019 Galaxy Admin Training
>  will be offered
> January 28 through February 1 at Penn State University* (where the Galaxy
> Project got started over ten years ago). The workshop offers a 2 day
> introductory session
> 
> followed by a 3 day advanced topics session
> .
> Participants can register for one or both sessions.
>
> This workshop will cover what you need to know to set up your own
> high-performance and multi-user production Galaxy instance. Sessions will
> be *intensive and hands-on*, and taught by experienced instructors from
> the Galaxy Community. Participants will learn how to install, configure,
> customize, and extend their own Galaxy servers. Topics include tool
> configuration, authentication and user management, using heterogeneous
> storage and compute services, and many other topics that will enable you to
> get your own Galaxy server up and running, performing well, and used by
> your community.
>
> Registration
>  is
> now open and starts at $40 / day for participants from non-profits and
> academia. Early registration ends October 31. However, the 2016 and 2018
> admin training were both full, so you are strongly encouraged to *register
> now*.
>
> *The workshop does have prerequisites
> .
> Please read them before you register.*
> Cheers,
> Dave C.
>
>
> *About Galaxy *
> Galaxy is an open web based platform for biomedical data integration and
> analysis. It is deployed at large and small organizations around the world
> and used in a broad range of biomedical research domains, and across the
> tree of life.
> --
> https://galaxyproject.org/
> https://usegalaxy.org/
>
>

-- 
https://galaxyproject.org/
https://usegalaxy.org/
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Re: [galaxy-dev] Using soft-links to NFS-shares as user directories

2018-11-26 Thread Youssef GHORBAL 
Hello,

What do you mean exactly "doesn't work anymore" ? Do current links no longer 
appear in data-library ? Do new soft-links can no longer be made available into 
data-library ? Do you have any error messages ?
By the way the symlink permissions are not valuable, you need to check the 
target permissions (/galaxy-clients/w190_galaxy/ for instance)

Youssef Ghorbal
IIS / DSI
Institut Pasteur
---
On 26 Nov 2018, at 15:23, Previti 
mailto:christopher.prev...@dkfz-heidelberg.de>>
 wrote:

Dear all,

We implemented a system using soft-links to link user-directories to NFS shares 
in order to import/link datasets that are larger than 2GB (through links to 
data-libraries) and provide our users with longer term storage space for their 
analyses.
This worked fine for Galaxy version 17.09...and stopped working for Version 
18.05.

An example can be seen here in the folder (the path to this folder will vary 
between installations): /opt/galaxy/galaxy/database/files

lrwxrwxrwx   1 galaxy  W190-htseq-bioinf  28 Sep 11 12:37 
christopher.prev...@dkfz-heidelberg.de
 -> /galaxy-clients/w190_galaxy/

Setting the proper rights allows users to link files from the nfs data-share 
make available under /galaxy-clients (in this case the share  is called 
"w190_galaxy")
directly into a data-library (with the approriate rights).

Would anybody have an idea why this doesn't work anymore in v18.05?
Is it a galaxy.ini configuration issue?

Thanks for any advise you could provide!

Christopher




--
Dr. Christopher Previti
Genomics and Proteomics Core Facility
High Throughput Sequencing (W190)
Bioinformatician
German Cancer Research Center (DKFZ)
Foundation under Public Law
Im Neuenheimer Feld 580
69120 Heidelberg
Germany
Room: B2.102 (INF580/TP3)
Phone: +49 6221 42-4661
christopher.prev...@dkfz.de
www.dkfz.de
Management Board: Prof. Dr. Michael Baumann, Prof. Dr. Josef Puchta
VAT-ID No.: DE143293537

Vertraulichkeitshinweis: Diese Nachricht ist ausschließlich für die Personen 
bestimmt, an die sie adressiert ist.
Sie kann vertrauliche und/oder nur für den/die Empfänger bestimmte 
Informationen enthalten. Sollten Sie nicht
der bestimmungsgemäße Empfänger sein, kontaktieren Sie bitte den Absender und 
löschen Sie die Mitteilung.
Jegliche unbefugte Verwendung der Informationen in dieser Nachricht ist 
untersagt.


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___
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[galaxy-dev] Using soft-links to NFS-shares as user directories

2018-11-26 Thread Previti 
Dear all,

We implemented a system using soft-links to link user-directories to NFS
shares in order to import/link datasets that are larger than 2GB
(through links to data-libraries) and provide our users with longer term
storage space for their analyses.
This worked fine for Galaxy version 17.09...and stopped working for
Version 18.05.

An example can be seen here in the folder (the path to this folder will
vary between installations): /opt/galaxy/galaxy/database/files

lrwxrwxrwx   1 galaxy  W190-htseq-bioinf  28 Sep 11 12:37
christopher.prev...@dkfz-heidelberg.de -> /galaxy-clients/w190_galaxy/

Setting the proper rights allows users to link files from the nfs
data-share make available under /galaxy-clients (in this case the share 
is called "w190_galaxy")
directly into a data-library (with the approriate rights).

Would anybody have an idea why this doesn't work anymore in v18.05?
Is it a galaxy.ini configuration issue?

Thanks for any advise you could provide!

Christopher




-- 
*Dr. Christopher Previti*
Genomics and Proteomics Core Facility
High Throughput Sequencing (W190)
Bioinformatician

German Cancer Research Center (DKFZ)
Foundation under Public Law
Im Neuenheimer Feld 580
69120 Heidelberg
Germany
Room: B2.102 (INF580/TP3)
Phone: +49 6221 42-4661

christopher.prev...@dkfz.de 
www.dkfz.de 

Management Board: Prof. Dr. Michael Baumann, Prof. Dr. Josef Puchta
VAT-ID No.: DE143293537

Vertraulichkeitshinweis: Diese Nachricht ist ausschließlich für die
Personen bestimmt, an die sie adressiert ist.
Sie kann vertrauliche und/oder nur für den/die Empfänger bestimmte
Informationen enthalten. Sollten Sie nicht
der bestimmungsgemäße Empfänger sein, kontaktieren Sie bitte den
Absender und löschen Sie die Mitteilung.
Jegliche unbefugte Verwendung der Informationen in dieser Nachricht ist
untersagt.


___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
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