[galaxy-dev] Error

2019-06-26 Thread Nancy Ide 
73.16.113.171 - - [25/Jun/2019:10:38:04 -0900] "GET 
/api/tools/toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1/build?version=0.1&__identifer=x7nwf73vi1b_version=0.1
 HTTP/1.0" 200 - 
"http://jetstream.lappsgrid.org/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Fplotly_ml_performance_plots%2Fplotly_ml_performance_plots%2F0.1=0.1&__identifer=x7nwf73vi1b;
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like Gecko) Version/12.1.1 Safari/605.1.15"
73.16.113.171 - - [25/Jun/2019:10:38:05 -0900] "GET /api/webhooks HTTP/1.0" 200 
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"http://jetstream.lappsgrid.org/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Fplotly_ml_performance_plots%2Fplotly_ml_performance_plots%2F0.1=0.1&__identifer=x7nwf73vi1b;
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like Gecko) Version/12.1.1 Safari/605.1.15"
73.16.113.171 - - [25/Jun/2019:10:38:08 -0900] "POST 
/api/tools/toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1/build
 HTTP/1.0" 200 - 
"http://jetstream.lappsgrid.org/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Fplotly_ml_performance_plots%2Fplotly_ml_performance_plots%2F0.1=0.1&__identifer=x7nwf73vi1b;
 "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/605.1.15 (KHTML, 
like Gecko) Version/12.1.1 Safari/605.1.15"
galaxy.tools DEBUG 2019-06-25 10:38:10,307 Validated and populated state for 
tool request (38.814 ms)
galaxy.tools.actions INFO 2019-06-25 10:38:10,380 Handled output named 
output_confusion for tool 
toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1
 (37.131 ms)
galaxy.tools.actions INFO 2019-06-25 10:38:10,402 Handled output named 
output_prf for tool 
toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1
 (21.811 ms)
galaxy.tools.actions INFO 2019-06-25 10:38:10,420 Handled output named 
output_roc for tool 
toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1
 (17.491 ms)
galaxy.tools.actions INFO 2019-06-25 10:38:10,441 Added output datasets to 
history (21.286 ms)
galaxy.tools.actions INFO 2019-06-25 10:38:10,443 Setup for job 
Job[unflushed,tool_id=toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1]
 complete, ready to be enqueued (1.959 ms)
galaxy.util.handlers DEBUG 2019-06-25 10:38:10,443 
(Job[unflushed,tool_id=toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1])
 Selected handler 'main' by random choice from handler tag '_default_'
galaxy.util.handlers INFO 2019-06-25 10:38:10,506 Flushed transaction for 
Job[id=1512,tool_id=toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1]
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galaxy.util.handlers INFO 2019-06-25 10:38:10,506 
(Job[id=1512,tool_id=toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1])
 Handler 'main' assigned using 'db-preassign' assignment method
galaxy.tools.execute DEBUG 2019-06-25 10:38:10,506 Tool 
[toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1]
 created job [1512] (175.969 ms)
galaxy.tools.execute DEBUG 2019-06-25 10:38:10,514 Executed 1 job(s) for tool 
toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.1
 request: (206.577 ms)
73.16.113.171 - - [25/Jun/2019:10:38:10 -0900] "POST /api/tools HTTP/1.0" 200 - 
"http://jetstream.lappsgrid.org/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Fplotly_ml_performance_plots%2Fplotly_ml_performance_plots%2F0.1=0.1&__identifer=x7nwf73vi1b;
 "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/605.1.15 (KHTML, 
like Gecko) Version/12.1.1 Safari/605.1.15"
73.16.113.171 - - [25/Jun/2019:10:38:10 -0900] "GET /api/webhooks HTTP/1.0" 200 
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"http://jetstream.lappsgrid.org/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Fplotly_ml_performance_plots%2Fplotly_ml_performance_plots%2F0.1=0.1&__identifer=x7nwf73vi1b;
 "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/605.1.15 (KHTML, 
like Gecko) Version/12.1.1 Safari/605.1.15"
galaxy.jobs.mapper DEBUG 2019-06-25 10:38:10,812 (1512) Mapped job to 
destination id: local
galaxy.jobs.handler DEBUG 2019-06-25 10:38:10,859 (1512) Dispatching to local 
runner
galaxy.jobs DEBUG 2019-06-25 10:38:10,911 (1512) Persisting job destination 
(destination id: local)
galaxy.jobs DEBUG 2019-06-25 10:38:10,914 (1512) Working directory for job is: 
/home/galaxy/galaxy/database/jobs_directory/001/1512
galaxy.jobs.runners DEBUG 2019-06-25 10:38:10,941 Job [1512] queued (81.315 ms)
galaxy.jobs.handler INFO 2019-06-25 10:38:10,961 (1512) Job dispatched
73.16.113.171 - - [25/Jun/2019:10:38:10 -0900] "GET

[galaxy-dev] Re: Error

2019-06-26 Thread ide 
Unfortunately still the same error! Trying Pietro’s solution.

> On Jun 26, 2019, at 5:57 AM, Björn Grüning  wrote:
> 
> Hi Nancy,
> 
> this looks like a timout during a download of conda packages.
> 
> I assume anaconda.org had some hiccups, please try again. Those URLs should 
> exists.
> 
> Ciao,
> Bjoern
> 
> Am 25.06.19 um 22:59 schrieb Nancy Ide:
>> ___
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-

Nancy Ide
Professor of Computer Science

Department of Computer Science
Vassar College
Poughkeepsie, New York 12604-0520 
USA

tel: (+1 845) 437 5988
fax: (+1 845) 437 7498
email: i...@cs.vassar.edu
http://www.cs.vassar.edu/~ide

-



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[galaxy-dev] Re: Error

2019-06-26 Thread Pietro Mandreoli 
Hi,
probably the package is broken see 
https://anaconda.org/conda-forge/libgcc-ng/files .
Try to install the previous version manually, activating conda and then the 
conda environment of the tool.

commands:
source _conda/bin/activate to activate CONDA
cd _conda/envs 

source activate  

then conda install  -c 

Best regards, 

PM

Il 25/06/19 22:59, Nancy Ide   ha scritto: 
> 
> I get this error when trying to run "Plot confusion matrix, precision, recall 
> and ROC and AUC curves":
> 
> 
> > CondaError: CondaHTTPError: HTTP 404 NOT FOUND for url 
> >  >  
> > >
> 
> 
> as the file libgcc-ng-7.3.0-hdf63c60_0.tar.bz2 does not exist in 
> https://conda.anaconda.org/conda-forge/linux-64/ 
> 
> 
> 
>   
> 
> 
> Please help!
> 
> Thanks
> -
> 
> Nancy Ide
> Professor of Computer Science
> 
> Department of Computer Science
> Vassar College
> Poughkeepsie, New York 12604-0520 
> USA
> 
> tel: (+1 845) 437 5988
> fax: (+1 845) 437 7498
> email: i...@cs.vassar.edu
> http://www.cs.vassar.edu/~ide
> 
> -
> 
> 
> 
> 
> 
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client. To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>  %(web_page_url)s
> 
> To search Galaxy mailing lists use the unified search at:
>  http://galaxyproject.org/search/
> 
> 

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[galaxy-dev] Re: Error

2019-06-26 Thread Björn Grüning 

Hi Nancy,

this looks like a timout during a download of conda packages.

I assume anaconda.org had some hiccups, please try again. Those URLs 
should exists.


Ciao,
Bjoern

Am 25.06.19 um 22:59 schrieb Nancy Ide:

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