[galaxy-dev] Re: conda not installing deps.

[Björn Grüning]

Hi Jochen,

what is not working? Do you have any error message.

Ciao,
Bjoern

Am 25.07.19 um 15:45 schrieb Jochen Bick:

Hi

we have a new galaxy 19.01 instance and conda is somehow not running
correctly:

galaxy.yml

   #dependency_resolvers_config_file: config/dependency_resolvers_conf.xml
   conda_prefix: /opt/galaxy/tools/_conda
   #conda_exec: null
   #conda_debug: false
   #conda_ensure_channels: 'iuc,conda-forge,bioconda,defaults'
   #conda_use_local: false
   conda_auto_install: true
   conda_auto_init: true
   conda_copy_dependencies: true

   job_working_directory: /opt/galaxy/daten/jobs_directory

any ideas?

Thanks Jochen





--
ETH Zurich
*Jochen Bick*
Animal Physiology
Institute of Agricultural Sciences
Postal address: Universitätstrasse 2 / LFW B 58.1
8092 Zurich, Switzerland
Office: Eschikon 27
8315 Lindau, Switzerland

Phone +41 52 354 92 06
jochen.b...@usys.ethz.ch 
www.ap.ethz.ch

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[galaxy-dev] Re: conda not installing deps.

[Jochen Bick]

are there any special setting needed for the _conda folder 755 ist ok?

On 25.07.19 15:45, Jochen Bick wrote:
> Hi
>
> we have a new galaxy 19.01 instance and conda is somehow not running
> correctly:
>
> galaxy.yml
>
>   #dependency_resolvers_config_file: config/dependency_resolvers_conf.xml
>   conda_prefix: /opt/galaxy/tools/_conda
>   #conda_exec: null
>   #conda_debug: false
>   #conda_ensure_channels: 'iuc,conda-forge,bioconda,defaults'
>   #conda_use_local: false
>   conda_auto_install: true
>   conda_auto_init: true
>   conda_copy_dependencies: true
>
>   job_working_directory: /opt/galaxy/daten/jobs_directory
>
> any ideas?
>
> Thanks Jochen
>
>
>        
>
> --   
> ETH Zurich
> *Jochen Bick*
> Animal Physiology
> Institute of Agricultural Sciences
> Postal address: Universitätstrasse 2 / LFW B 58.1
> 8092 Zurich, Switzerland
> Office: Eschikon 27
> 8315 Lindau, Switzerland
>
> Phone +41 52 354 92 06
> jochen.b...@usys.ethz.ch 
> www.ap.ethz.ch
>
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   %(web_page_url)s
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/

-- 
ETH Zurich
*Jochen Bick*
Animal Physiology
Institute of Agricultural Sciences
Postal address: Universitätstrasse 2 / LFW B 58.1
8092 Zurich, Switzerland
Office: Eschikon 27
8315 Lindau, Switzerland

Phone +41 52 354 92 06
jochen.b...@usys.ethz.ch 
www.ap.ethz.ch

___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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