[galaxy-dev] Problem with cleanup.py

[George Weingart]

Hello,

We are incurring a problem with cleanup.py:

We have already run two cycles of cleanup.py (1-6) with a cut off of 30
days,  we see in the logs that many datasets are deleted,  but when we do
df -kh  to check the file system, we see creeping up utilization of space -
no relinquishing of any space.

We are running in a docker environment and our cleanup job looks as follows:


#!/bin/bash

export GALAXY_VIRTUAL_ENV=/galaxy_venv

source $GALAXY_VIRTUAL_ENV/bin/activate

export script="/galaxy-central/scripts/cleanup_datasets/cleanup_datasets.py"


export config="/etc/galaxy/galaxy.ini"

export logdir="/export/galaxy-central/logs"

export days=30

export num=$1

nohup $script $config -d $days -$num -r -f >> $logdir/cleanup$num.log &




and we run it with ./run_cleanup.sh 1

or 2, 3 etc.


Any ideas ?


Thanks!

George Weingart PhD

Huttenhower Lab

Harvard School of Public Health
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[galaxy-dev] Question: How to limit the number of dispatched jobs in Galaxy?

[George Weingart]

Hi

Is there a way to  control the demand that Galaxy is putting on the server
by limiting the number of jobs that will dispatch at a time ?

Thanks!
George Weingart PhD
Huttenhower Lab
Harvard School of Public Health
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[galaxy-dev] Refresh of screens in Galaxy Docker environment

[George Weingart]

Hello,

We are installing Galaxy in a Docker environment and we are encountering an
issue where we need to refresh the screen (For Example, using F5)  in order
to see the status of the job.
We see that using chrome as browser.
If we don't refresh the screen, it stays (The job might have completed long
ago but it still shows executing in yellow)

Any suggestions how to resolve the problem?

Thanks!
George Weingart
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