Re: [galaxy-dev] Collapse tool panel and history panel

2016-02-25 Thread Makis Ladoukakis
That worked perfectly! 

Thanks a lot! 

Cheers,
Makis

From: m.vandenb...@gmail.com
Date: Thu, 25 Feb 2016 11:34:36 +0100
Subject: Re: [galaxy-dev] Collapse tool panel and history panel
To: makis4e...@hotmail.com
CC: dannon.ba...@gmail.com; galaxy-...@lists.bx.psu.edu

Hi Makis,
if you change the javascript in client/ ... you need to run grunt.The 
instructions are in 
https://github.com/galaxyproject/galaxy/blob/dev/client/README.md.
Cheers,Marius
On 25 February 2016 at 10:57, Makis Ladoukakis  wrote:



Just an update/bump of the issue. With the new 16.01 version I made the changes 
in the /client/galaxy/scripts/apps/analysis.js 
b/client/galaxy/scripts/apps/analysis.js file but the none of the panels were 
collapsed even when i restarted my Galaxy instance.

I don't really get the mechanics behind it. Seems like any changes i do either 
in the js files or the mako scripts never take effect in the actual instance. I 
even tried to delete everything in there leaving just a blank file to test my 
theory and after restart the Galaxy instance initializes with no errors at all.

Any ideas?
Makis

From: makis4e...@hotmail.com
To: dannon.ba...@gmail.com
Date: Mon, 22 Feb 2016 13:47:59 +0200
CC: galaxy-...@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Collapse tool panel and history panel




The git log ..origin/master command produced no output so I guess I have the 
latest release (15.10.1 maybe?). The git pull command confirmed that. Should I 
use a release from the dev branch?

Kind regards,
Makis

Date: Fri, 19 Feb 2016 08:39:35 -0500
Subject: Re: [galaxy-dev] Collapse tool panel and history panel
From: dannon.ba...@gmail.com
To: makis4e...@hotmail.com
CC: galaxy-...@lists.bx.psu.edu

Sure, I can help.  Which version of Galaxy are you currently running?  I didn't 
check the history very well and the fix I suggested will work for the 
forthcoming 16.01 release (or current dev branch), but not 15.10.

On Fri, Feb 19, 2016 at 8:32 AM, Makis Ladoukakis  
wrote:



Hello Dannon,

Sorry for asking but can you help me out a little bit with that? I searched in 
my galaxy directory in order to add those two lines you mention in the link but 
there is no galaxy/scripts/apps/analysis.js file and neither any file 
containing the string 'analysisPage.right.historyView'. 

Any advice?

Thank you,
Makis
Date: Mon, 28 Dec 2015 14:30:02 -0500
Subject: Re: [galaxy-dev] Collapse tool panel and history panel
From: dannon.ba...@gmail.com
To: makis4e...@hotmail.com
CC: galaxy-...@lists.bx.psu.edu

Hi Makis,
We've restructured much of the client code fairly recently.  Something like 
this should work for you now:
https://gist.github.com/dannon/bd470d9c70019b07cb8b


Sorry for the slow response!
-Dannon

On Sat, Dec 19, 2015 at 2:57 PM, Makis Ladoukakis  
wrote:



Shamelessly bumping my own question... Does anyone have any ideas about 
collapsing the history and tool panel?

Thank you,
Makis Ladoukakis

From: makis4e...@hotmail.com
To: galaxy-...@lists.bx.psu.edu
Date: Wed, 16 Dec 2015 13:41:19 +0200
Subject: [galaxy-dev] Collapse tool panel and history panel




Hello,

Does anyone know how to start my Galaxy instance with the history panel and 
tool panel collapsed by default?

I used to do it by editing the galaxy/templates/base/base_panels.mako script 
and adding

lp.do_toggle();

and 

rp.do_toggle();

inside the if sections of %if self.has_left_panel: and %if 
self.has_right_panel: respectively but with my new installed instance this 
doesn't seem to work anymore.

Any ideas anyone?

Thank you,
Makis Ladoukakis



  

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Re: [galaxy-dev] Collapse tool panel and history panel

2016-02-25 Thread Marius van den Beek
Hi Makis,

if you change the javascript in client/ ... you need to run grunt.
The instructions are in
https://github.com/galaxyproject/galaxy/blob/dev/client/README.md.

Cheers,
Marius

On 25 February 2016 at 10:57, Makis Ladoukakis 
wrote:

> Just an update/bump of the issue. With the new 16.01 version I made the
> changes in the /client/galaxy/scripts/apps/analysis.js
> b/client/galaxy/scripts/apps/analysis.js file but the none of the panels
> were collapsed even when i restarted my Galaxy instance.
>
> I don't really get the mechanics behind it. Seems like any changes i do
> either in the js files or the mako scripts never take effect in the actual
> instance. I even tried to delete everything in there leaving just a blank
> file to test my theory and after restart the Galaxy instance initializes
> with no errors at all.
>
> Any ideas?
> Makis
>
> --
> From: makis4e...@hotmail.com
> To: dannon.ba...@gmail.com
> Date: Mon, 22 Feb 2016 13:47:59 +0200
> CC: galaxy-...@lists.bx.psu.edu
>
> Subject: Re: [galaxy-dev] Collapse tool panel and history panel
>
> The git log ..origin/master command produced no output so I guess I have
> the latest release (15.10.1 maybe?). The git pull command confirmed that.
> Should I use a release from the dev branch?
>
> Kind regards,
> Makis
>
> --------------
> Date: Fri, 19 Feb 2016 08:39:35 -0500
> Subject: Re: [galaxy-dev] Collapse tool panel and history panel
> From: dannon.ba...@gmail.com
> To: makis4e...@hotmail.com
> CC: galaxy-...@lists.bx.psu.edu
>
> Sure, I can help.  Which version of Galaxy are you currently running?  I
> didn't check the history very well and the fix I suggested will work for
> the forthcoming 16.01 release (or current dev branch), but not 15.10.
>
>
> On Fri, Feb 19, 2016 at 8:32 AM, Makis Ladoukakis 
> wrote:
>
> Hello Dannon,
>
> Sorry for asking but can you help me out a little bit with that? I
> searched in my galaxy directory in order to add those two lines you mention
> in the link but there is no galaxy/scripts/apps/analysis.js file and
> neither any file containing the string 'analysisPage.right.historyView'.
>
> Any advice?
>
> Thank you,
> Makis
> --
> Date: Mon, 28 Dec 2015 14:30:02 -0500
> Subject: Re: [galaxy-dev] Collapse tool panel and history panel
> From: dannon.ba...@gmail.com
> To: makis4e...@hotmail.com
> CC: galaxy-...@lists.bx.psu.edu
>
>
> Hi Makis,
>
> We've restructured much of the client code fairly recently.  Something
> like this should work for you now:
>
> https://gist.github.com/dannon/bd470d9c70019b07cb8b
>
>
> Sorry for the slow response!
>
> -Dannon
>
>
> On Sat, Dec 19, 2015 at 2:57 PM, Makis Ladoukakis 
> wrote:
>
> Shamelessly bumping my own question... Does anyone have any ideas about
> collapsing the history and tool panel?
>
> Thank you,
> Makis Ladoukakis
>
> --
> From: makis4e...@hotmail.com
> To: galaxy-...@lists.bx.psu.edu
> Date: Wed, 16 Dec 2015 13:41:19 +0200
> Subject: [galaxy-dev] Collapse tool panel and history panel
>
>
> Hello,
>
> Does anyone know how to start my Galaxy instance with the history panel
> and tool panel collapsed by default?
>
> I used to do it by editing the galaxy/templates/base/base_panels.mako
> script and adding
>
> *lp.do_toggle();*
>
> and
>
>
>
> *rp.do_toggle();*inside the if sections of *%if self.has_left_panel: *and *%if
> self.has_right_panel: *respectively but with my new installed instance
> this doesn't seem to work anymore.
>
> Any ideas anyone?
>
> Thank you,
> Makis Ladoukakis
>
>
>
>
> ___ Please keep
> all replies on the list by using "reply all" in your mail client. To manage
> your subscriptions to this and other Galaxy lists, please use the interface
> at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use
> the unified search at: http://galaxyproject.org/search/mailinglists/
>
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
>
>
>
>
> ___ Please keep
> all replies on the list by using "reply all" in your mail client. To mana

Re: [galaxy-dev] Collapse tool panel and history panel

2016-02-25 Thread Makis Ladoukakis
Just an update/bump of the issue. With the new 16.01 version I made the changes 
in the /client/galaxy/scripts/apps/analysis.js 
b/client/galaxy/scripts/apps/analysis.js file but the none of the panels were 
collapsed even when i restarted my Galaxy instance.

I don't really get the mechanics behind it. Seems like any changes i do either 
in the js files or the mako scripts never take effect in the actual instance. I 
even tried to delete everything in there leaving just a blank file to test my 
theory and after restart the Galaxy instance initializes with no errors at all.

Any ideas?
Makis

From: makis4e...@hotmail.com
To: dannon.ba...@gmail.com
Date: Mon, 22 Feb 2016 13:47:59 +0200
CC: galaxy-...@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Collapse tool panel and history panel




The git log ..origin/master command produced no output so I guess I have the 
latest release (15.10.1 maybe?). The git pull command confirmed that. Should I 
use a release from the dev branch?

Kind regards,
Makis

Date: Fri, 19 Feb 2016 08:39:35 -0500
Subject: Re: [galaxy-dev] Collapse tool panel and history panel
From: dannon.ba...@gmail.com
To: makis4e...@hotmail.com
CC: galaxy-...@lists.bx.psu.edu

Sure, I can help.  Which version of Galaxy are you currently running?  I didn't 
check the history very well and the fix I suggested will work for the 
forthcoming 16.01 release (or current dev branch), but not 15.10.

On Fri, Feb 19, 2016 at 8:32 AM, Makis Ladoukakis  
wrote:



Hello Dannon,

Sorry for asking but can you help me out a little bit with that? I searched in 
my galaxy directory in order to add those two lines you mention in the link but 
there is no galaxy/scripts/apps/analysis.js file and neither any file 
containing the string 'analysisPage.right.historyView'. 

Any advice?

Thank you,
Makis
Date: Mon, 28 Dec 2015 14:30:02 -0500
Subject: Re: [galaxy-dev] Collapse tool panel and history panel
From: dannon.ba...@gmail.com
To: makis4e...@hotmail.com
CC: galaxy-...@lists.bx.psu.edu

Hi Makis,
We've restructured much of the client code fairly recently.  Something like 
this should work for you now:
https://gist.github.com/dannon/bd470d9c70019b07cb8b


Sorry for the slow response!
-Dannon

On Sat, Dec 19, 2015 at 2:57 PM, Makis Ladoukakis  
wrote:



Shamelessly bumping my own question... Does anyone have any ideas about 
collapsing the history and tool panel?

Thank you,
Makis Ladoukakis

From: makis4e...@hotmail.com
To: galaxy-...@lists.bx.psu.edu
Date: Wed, 16 Dec 2015 13:41:19 +0200
Subject: [galaxy-dev] Collapse tool panel and history panel




Hello,

Does anyone know how to start my Galaxy instance with the history panel and 
tool panel collapsed by default?

I used to do it by editing the galaxy/templates/base/base_panels.mako script 
and adding

lp.do_toggle();

and 

rp.do_toggle();

inside the if sections of %if self.has_left_panel: and %if 
self.has_right_panel: respectively but with my new installed instance this 
doesn't seem to work anymore.

Any ideas anyone?

Thank you,
Makis Ladoukakis



  

___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/ 
  

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and other Galaxy lists, please use the interface at:

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To search Galaxy mailing lists use the unified search at:

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Please keep all replies on the list by using "reply all"
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Re: [galaxy-dev] Collapse tool panel and history panel

2016-02-22 Thread Makis Ladoukakis
The git log ..origin/master command produced no output so I guess I have the 
latest release (15.10.1 maybe?). The git pull command confirmed that. Should I 
use a release from the dev branch?

Kind regards,
Makis

Date: Fri, 19 Feb 2016 08:39:35 -0500
Subject: Re: [galaxy-dev] Collapse tool panel and history panel
From: dannon.ba...@gmail.com
To: makis4e...@hotmail.com
CC: galaxy-...@lists.bx.psu.edu

Sure, I can help.  Which version of Galaxy are you currently running?  I didn't 
check the history very well and the fix I suggested will work for the 
forthcoming 16.01 release (or current dev branch), but not 15.10.

On Fri, Feb 19, 2016 at 8:32 AM, Makis Ladoukakis  
wrote:



Hello Dannon,

Sorry for asking but can you help me out a little bit with that? I searched in 
my galaxy directory in order to add those two lines you mention in the link but 
there is no galaxy/scripts/apps/analysis.js file and neither any file 
containing the string 'analysisPage.right.historyView'. 

Any advice?

Thank you,
Makis
Date: Mon, 28 Dec 2015 14:30:02 -0500
Subject: Re: [galaxy-dev] Collapse tool panel and history panel
From: dannon.ba...@gmail.com
To: makis4e...@hotmail.com
CC: galaxy-...@lists.bx.psu.edu

Hi Makis,
We've restructured much of the client code fairly recently.  Something like 
this should work for you now:
https://gist.github.com/dannon/bd470d9c70019b07cb8b


Sorry for the slow response!
-Dannon

On Sat, Dec 19, 2015 at 2:57 PM, Makis Ladoukakis  
wrote:



Shamelessly bumping my own question... Does anyone have any ideas about 
collapsing the history and tool panel?

Thank you,
Makis Ladoukakis

From: makis4e...@hotmail.com
To: galaxy-...@lists.bx.psu.edu
Date: Wed, 16 Dec 2015 13:41:19 +0200
Subject: [galaxy-dev] Collapse tool panel and history panel




Hello,

Does anyone know how to start my Galaxy instance with the history panel and 
tool panel collapsed by default?

I used to do it by editing the galaxy/templates/base/base_panels.mako script 
and adding

lp.do_toggle();

and 

rp.do_toggle();

inside the if sections of %if self.has_left_panel: and %if 
self.has_right_panel: respectively but with my new installed instance this 
doesn't seem to work anymore.

Any ideas anyone?

Thank you,
Makis Ladoukakis



  

___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/ 
  

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and other Galaxy lists, please use the interface at:

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To search Galaxy mailing lists use the unified search at:

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Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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To search Galaxy mailing lists use the unified search at:
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Re: [galaxy-dev] Collapse tool panel and history panel

2016-02-19 Thread Dannon Baker
Sure, I can help.  Which version of Galaxy are you currently running?  I
didn't check the history very well and the fix I suggested will work for
the forthcoming 16.01 release (or current dev branch), but not 15.10.


On Fri, Feb 19, 2016 at 8:32 AM, Makis Ladoukakis 
wrote:

> Hello Dannon,
>
> Sorry for asking but can you help me out a little bit with that? I
> searched in my galaxy directory in order to add those two lines you mention
> in the link but there is no galaxy/scripts/apps/analysis.js file and
> neither any file containing the string 'analysisPage.right.historyView'.
>
> Any advice?
>
> Thank you,
> Makis
> --
> Date: Mon, 28 Dec 2015 14:30:02 -0500
> Subject: Re: [galaxy-dev] Collapse tool panel and history panel
> From: dannon.ba...@gmail.com
> To: makis4e...@hotmail.com
> CC: galaxy-...@lists.bx.psu.edu
>
>
> Hi Makis,
>
> We've restructured much of the client code fairly recently.  Something
> like this should work for you now:
>
> https://gist.github.com/dannon/bd470d9c70019b07cb8b
>
>
> Sorry for the slow response!
>
> -Dannon
>
>
> On Sat, Dec 19, 2015 at 2:57 PM, Makis Ladoukakis 
> wrote:
>
> Shamelessly bumping my own question... Does anyone have any ideas about
> collapsing the history and tool panel?
>
> Thank you,
> Makis Ladoukakis
>
> --------------
> From: makis4e...@hotmail.com
> To: galaxy-...@lists.bx.psu.edu
> Date: Wed, 16 Dec 2015 13:41:19 +0200
> Subject: [galaxy-dev] Collapse tool panel and history panel
>
>
> Hello,
>
> Does anyone know how to start my Galaxy instance with the history panel
> and tool panel collapsed by default?
>
> I used to do it by editing the galaxy/templates/base/base_panels.mako
> script and adding
>
> *lp.do_toggle();*
>
> and
>
>
>
> *rp.do_toggle();*inside the if sections of *%if self.has_left_panel: *and *%if
> self.has_right_panel: *respectively but with my new installed instance
> this doesn't seem to work anymore.
>
> Any ideas anyone?
>
> Thank you,
> Makis Ladoukakis
>
>
>
>
> ___ Please keep
> all replies on the list by using "reply all" in your mail client. To manage
> your subscriptions to this and other Galaxy lists, please use the interface
> at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use
> the unified search at: http://galaxyproject.org/search/mailinglists/
>
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
>
>
>
___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
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To search Galaxy mailing lists use the unified search at:
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Re: [galaxy-dev] Collapse tool panel and history panel

2016-02-19 Thread Makis Ladoukakis
Hello Dannon,

Sorry for asking but can you help me out a little bit with that? I searched in 
my galaxy directory in order to add those two lines you mention in the link but 
there is no galaxy/scripts/apps/analysis.js file and neither any file 
containing the string 'analysisPage.right.historyView'. 

Any advice?

Thank you,
Makis
Date: Mon, 28 Dec 2015 14:30:02 -0500
Subject: Re: [galaxy-dev] Collapse tool panel and history panel
From: dannon.ba...@gmail.com
To: makis4e...@hotmail.com
CC: galaxy-...@lists.bx.psu.edu

Hi Makis,
We've restructured much of the client code fairly recently.  Something like 
this should work for you now:
https://gist.github.com/dannon/bd470d9c70019b07cb8b


Sorry for the slow response!
-Dannon

On Sat, Dec 19, 2015 at 2:57 PM, Makis Ladoukakis  
wrote:



Shamelessly bumping my own question... Does anyone have any ideas about 
collapsing the history and tool panel?

Thank you,
Makis Ladoukakis

From: makis4e...@hotmail.com
To: galaxy-...@lists.bx.psu.edu
Date: Wed, 16 Dec 2015 13:41:19 +0200
Subject: [galaxy-dev] Collapse tool panel and history panel




Hello,

Does anyone know how to start my Galaxy instance with the history panel and 
tool panel collapsed by default?

I used to do it by editing the galaxy/templates/base/base_panels.mako script 
and adding

lp.do_toggle();

and 

rp.do_toggle();

inside the if sections of %if self.has_left_panel: and %if 
self.has_right_panel: respectively but with my new installed instance this 
doesn't seem to work anymore.

Any ideas anyone?

Thank you,
Makis Ladoukakis



  

___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/ 
  

___

Please keep all replies on the list by using "reply all"

in your mail client.  To manage your subscriptions to this

and other Galaxy lists, please use the interface at:

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To search Galaxy mailing lists use the unified search at:

  http://galaxyproject.org/search/mailinglists/

  ___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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To search Galaxy mailing lists use the unified search at:
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Re: [galaxy-dev] Collapse tool panel and history panel

2015-12-28 Thread Dannon Baker
Hi Makis,

We've restructured much of the client code fairly recently.  Something like
this should work for you now:

https://gist.github.com/dannon/bd470d9c70019b07cb8b


Sorry for the slow response!

-Dannon


On Sat, Dec 19, 2015 at 2:57 PM, Makis Ladoukakis 
wrote:

> Shamelessly bumping my own question... Does anyone have any ideas about
> collapsing the history and tool panel?
>
> Thank you,
> Makis Ladoukakis
>
> --
> From: makis4e...@hotmail.com
> To: galaxy-...@lists.bx.psu.edu
> Date: Wed, 16 Dec 2015 13:41:19 +0200
> Subject: [galaxy-dev] Collapse tool panel and history panel
>
>
> Hello,
>
> Does anyone know how to start my Galaxy instance with the history panel
> and tool panel collapsed by default?
>
> I used to do it by editing the galaxy/templates/base/base_panels.mako
> script and adding
>
> *lp.do_toggle();*
>
> and
>
>
>
> *rp.do_toggle();*inside the if sections of *%if self.has_left_panel: *and *%if
> self.has_right_panel: *respectively but with my new installed instance
> this doesn't seem to work anymore.
>
> Any ideas anyone?
>
> Thank you,
> Makis Ladoukakis
>
>
>
>
> ___ Please keep
> all replies on the list by using "reply all" in your mail client. To manage
> your subscriptions to this and other Galaxy lists, please use the interface
> at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use
> the unified search at: http://galaxyproject.org/search/mailinglists/
>
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/
>
___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
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To search Galaxy mailing lists use the unified search at:
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Re: [galaxy-dev] Collapse tool panel and history panel

2015-12-19 Thread Makis Ladoukakis
Shamelessly bumping my own question... Does anyone have any ideas about 
collapsing the history and tool panel?

Thank you,
Makis Ladoukakis

From: makis4e...@hotmail.com
To: galaxy-...@lists.bx.psu.edu
Date: Wed, 16 Dec 2015 13:41:19 +0200
Subject: [galaxy-dev] Collapse tool panel and history panel




Hello,

Does anyone know how to start my Galaxy instance with the history panel and 
tool panel collapsed by default?

I used to do it by editing the galaxy/templates/base/base_panels.mako script 
and adding

lp.do_toggle();

and 

rp.do_toggle();

inside the if sections of %if self.has_left_panel: and %if 
self.has_right_panel: respectively but with my new installed instance this 
doesn't seem to work anymore.

Any ideas anyone?

Thank you,
Makis Ladoukakis



  

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[galaxy-dev] Collapse tool panel and history panel

2015-12-16 Thread Makis Ladoukakis
Hello,

Does anyone know how to start my Galaxy instance with the history panel and 
tool panel collapsed by default?

I used to do it by editing the galaxy/templates/base/base_panels.mako script 
and adding

lp.do_toggle();

and 

rp.do_toggle();

inside the if sections of %if self.has_left_panel: and %if 
self.has_right_panel: respectively but with my new installed instance this 
doesn't seem to work anymore.

Any ideas anyone?

Thank you,
Makis Ladoukakis



  ___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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  http://galaxyproject.org/search/mailinglists/