Re: [galaxy-dev] Dataset Cleanup
The quota usage can occasionally get out of sync with reality. If you're an admin user, go to /admin/users, select a user, and you should be able to recalculate the quota to verify it is correct. There's also a script distributed with Galaxy (/scripts/set_user_disk_usage.py) that allows you to recalculate across all users. Let me know if this wasn't your issue and I can think of other possible causes. -Dannon On Thu, Jan 5, 2017 at 5:17 PM, McCully, Dwayne (NIH/NIAMS) [C] < dmccu...@mail.nih.gov> wrote: > Strange since I've deleted almost everything from my Galaxy account and it > still says 59 GB and > another user is having the same problem. Is there a way to tie the > dataset or history to the user? > I can then ask them to delete them. > > Dwayne > > -Original Message- > From: Björn Grüning [mailto:bjoern.gruen...@gmail.com] > Sent: Thursday, January 05, 2017 9:43 AM > To: McCully, Dwayne (NIH/NIAMS) [C] <dmccu...@mail.nih.gov>; > galaxy-dev@lists.galaxyproject.org > Subject: Re: [galaxy-dev] Dataset Cleanup > > Hi, > > this script only deletes files that are marked as deleted. So it might be > that users have old histories and this data will not be removed. > > For you account and the used-space. Please go to your admin section, to > users, your user-name and there should be an option to recalculate the > disc-usage for your user. > > Hope this helps, > Bjoern > > Am 03.01.2017 um 16:41 schrieb McCully, Dwayne (NIH/NIAMS) [C]: > > Hello Everyone, > > > > > > > > I have datasets that go back over a year in the files/000 directory > > but running the following script does not delete the datasets. > > > > Also, my account says I have 59 GB used and can’t figure out where > > it’s getting that number. I have almost everything deleted > > > > in my Galaxy account. > > > > > > > > galaxy_clean.sh > > > > #!/bin/sh -x > > > > > > > > /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/delete_userless_hist > > ories.sh > > > > /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/purge_histories.sh > > > > /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/purge_libraries.sh > > > > /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/purge_folders.sh > > > > /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/delete_datasets.sh > > > > /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/purge_datasets.sh > > > > Exit > > > > > > > > > > > > Any information on this issue would be appreciated. > > > > > > > > Dwayne > > > > > > > > ___ > > Please keep all replies on the list by using "reply all" > > in your mail client. To manage your subscriptions to this and other > > Galaxy lists, please use the interface at: > > https://lists.galaxyproject.org/ > > > > To search Galaxy mailing lists use the unified search at: > > http://galaxyproject.org/search/mailinglists/ > > > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Dataset Cleanup
Strange since I've deleted almost everything from my Galaxy account and it still says 59 GB and another user is having the same problem. Is there a way to tie the dataset or history to the user? I can then ask them to delete them. Dwayne -Original Message- From: Björn Grüning [mailto:bjoern.gruen...@gmail.com] Sent: Thursday, January 05, 2017 9:43 AM To: McCully, Dwayne (NIH/NIAMS) [C] <dmccu...@mail.nih.gov>; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] Dataset Cleanup Hi, this script only deletes files that are marked as deleted. So it might be that users have old histories and this data will not be removed. For you account and the used-space. Please go to your admin section, to users, your user-name and there should be an option to recalculate the disc-usage for your user. Hope this helps, Bjoern Am 03.01.2017 um 16:41 schrieb McCully, Dwayne (NIH/NIAMS) [C]: > Hello Everyone, > > > > I have datasets that go back over a year in the files/000 directory > but running the following script does not delete the datasets. > > Also, my account says I have 59 GB used and can’t figure out where > it’s getting that number. I have almost everything deleted > > in my Galaxy account. > > > > galaxy_clean.sh > > #!/bin/sh -x > > > > /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/delete_userless_hist > ories.sh > > /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/purge_histories.sh > > /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/purge_libraries.sh > > /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/purge_folders.sh > > /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/delete_datasets.sh > > /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/purge_datasets.sh > > Exit > > > > > > Any information on this issue would be appreciated. > > > > Dwayne > > > > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this and other > Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Dataset Cleanup
Hi, this script only deletes files that are marked as deleted. So it might be that users have old histories and this data will not be removed. For you account and the used-space. Please go to your admin section, to users, your user-name and there should be an option to recalculate the disc-usage for your user. Hope this helps, Bjoern Am 03.01.2017 um 16:41 schrieb McCully, Dwayne (NIH/NIAMS) [C]: > Hello Everyone, > > > > I have datasets that go back over a year in the files/000 directory but > running the following script does not delete the datasets. > > Also, my account says I have 59 GB used and can’t figure out where it’s > getting that number. I have almost everything deleted > > in my Galaxy account. > > > > galaxy_clean.sh > > #!/bin/sh -x > > > > /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/delete_userless_histories.sh > > /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/purge_histories.sh > > /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/purge_libraries.sh > > /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/purge_folders.sh > > /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/delete_datasets.sh > > /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/purge_datasets.sh > > Exit > > > > > > Any information on this issue would be appreciated. > > > > Dwayne > > > > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] Dataset Cleanup
Hello Everyone, I have datasets that go back over a year in the files/000 directory but running the following script does not delete the datasets. Also, my account says I have 59 GB used and can't figure out where it's getting that number. I have almost everything deleted in my Galaxy account. galaxy_clean.sh #!/bin/sh -x /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/delete_userless_histories.sh /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/purge_histories.sh /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/purge_libraries.sh /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/purge_folders.sh /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/delete_datasets.sh /home/niamsgalaxy/galaxy/scripts/cleanup_datasets/purge_datasets.sh Exit Any information on this issue would be appreciated. Dwayne ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
