[galaxy-dev] Re: Error when installing from toolshed

[Nancy Ide]

I have to leave so can’t do this now, I will as soon as possible and let you 
know. Thanks again!

> On Jul 31, 2019, at 7:24 PM, Martin Čech  wrote:
> 
> This might have something to do with the client build. Could you try running 
> 'make client` from Galaxy root folder?
> 
> Also what version of Galaxy are you experiencing this on, just 19.01 or did 
> you use different locally? And how are you starting Galaxy?
> 
> Martin
> 
> On Wed, Jul 31, 2019 at 1:16 PM Nancy Ide  > wrote:
> I very much appreciate the offer, but unfortunately I have to leave now. I am 
> at a conference in Florence and tomorrow is our demo at a workshop, so I 
> would be unable to do it tomorrow either, but anytime Friday would work if 
> that is possible.
> 
> We are now having the same problem on the jetstream instance, but earlier we 
> were able to install with the beta installer although not the regular one. 
> However, just now on my local instance I tried to use the installer again, 
> but I can’t get even to the repository (there is a message that the 
> repository queue was loaded and has 0 elements). When I click on the “Galaxy 
> Main Toolshed” button I can select one of the options but nothing happens. 
> This is also true now on our jetstream instance.
> 
> 
>> On Jul 31, 2019, at 7:02 PM, Martin Čech > > wrote:
>> 
>> Would you like to come to the admin channel so we can troubleshoot this 
>> interactively? https://gitter.im/galaxyproject/admins 
>> 
>> 
>> Martin
>> 
>> On Wed, Jul 31, 2019 at 12:56 PM Nancy Ide > > wrote:
>> Please look at jetstream.lappsgrid.org  — 
>> this is the development version I was using.
>> 
>> When I tried to pull from github it complained that some of my”untracked” 
>> files would be overwritten. I did a git stash but 3 files still were said to 
>> be overwritten, and I simply deleted those. The pull then went on 
>> uneventfully.
>> 
>>> On Jul 31, 2019, at 6:53 PM, Martin Čech >> > wrote:
>>> 
>>> I see version 18.09 at http://galaxy.lappsgrid.org/ 
>>>  - are you trying to update this instance to 
>>> 19.01? Do you have any local changes or issues when pulling new version?
>>> 
>>> On Wed, Jul 31, 2019 at 12:36 PM Nancy Ide >> > wrote:
>>> Hello
>>> 
>>> Cookies were enabled—also I was updating from our galaxy instance for the 
>>> LAPPS Grid, which is using version 19.01.
>>> 
 On Jul 31, 2019, at 6:34 PM, Martin Čech >>> > wrote:
 
 Hi Nancy,
 
 what versions of Galaxy did you update from and to? Please check if you 
 have cookies enabled in your browser.
 
 Martin
 
 On Wed, Jul 31, 2019 at 9:45 AM Nancy Ide >>> > wrote:
 Hello
 
 I am suddenly (after pulling a new version of galaxy) unable to install 
 from the toolshed. The error is: Repository installation is not possible 
 due to an invalid Galaxy URL: None. You may need to enable 
 third-party cookies in your browser.
 
 Any idea how I can fix this?
 
 
 -
 
 Nancy Ide
 Professor of Computer Science
 
 Department of Computer Science
 Vassar College
 Poughkeepsie, New York 12604-0520 
 USA
 
 tel: (+1 845) 437 5988
 fax: (+1 845) 437 7498
 email: i...@cs.vassar.edu 
 http://www.cs.vassar.edu/~ide 
 
 -
 
 
 
 
 ___
 Please keep all replies on the list by using "reply all"
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>>> 
>>> -
>>> 
>>> Nancy Ide
>>> Professor of Computer Science
>>> 
>>> Department of Computer Science
>>> Vassar College
>>> Poughkeepsie, New York 12604-0520 
>>> USA
>>> 
>>> tel: (+1 845) 437 5988
>>> fax: (+1 845) 437 7498
>>> email: i...@cs.vassar.edu 
>>> http://www.cs.vassar.edu/~ide 
>>> 
>>> -
>>> 
>>> 
>>> 
>>> 
>> 
>> -
>> 
>> Nancy Ide
>> Professor of Computer Science
>> 
>> Department of Computer Science
>> Vassar College
>> Poughkeepsie, New York 12604-0520 
>> USA
>> 
>> tel: (+1 845) 437 5988
>> fax: (+1 845) 437 7498
>> email: i...@cs.vassar.edu 
>>

[galaxy-dev] Re: Error when installing from toolshed

[Martin Čech]

This might have something to do with the client build. Could you try
running 'make client` from Galaxy root folder?

Also what version of Galaxy are you experiencing this on, just 19.01 or did
you use different locally? And how are you starting Galaxy?

Martin

On Wed, Jul 31, 2019 at 1:16 PM Nancy Ide  wrote:

> I very much appreciate the offer, but unfortunately I have to leave now. I
> am at a conference in Florence and tomorrow is our demo at a workshop, so I
> would be unable to do it tomorrow either, but anytime Friday would work if
> that is possible.
>
> We are now having the same problem on the jetstream instance, but earlier
> we were able to install with the beta installer although not the regular
> one. However, just now on my local instance I tried to use the installer
> again, but I can’t get even to the repository (there is a message that the
> repository queue was loaded and has 0 elements). When I click on the
> “Galaxy Main Toolshed” button I can select one of the options but nothing
> happens. This is also true now on our jetstream instance.
>
>
> On Jul 31, 2019, at 7:02 PM, Martin Čech  wrote:
>
> Would you like to come to the admin channel so we can troubleshoot this
> interactively? https://gitter.im/galaxyproject/admins
>
> Martin
>
> On Wed, Jul 31, 2019 at 12:56 PM Nancy Ide  wrote:
>
>> Please look at jetstream.lappsgrid.org — this is the development version
>> I was using.
>>
>> When I tried to pull from github it complained that some of my”untracked”
>> files would be overwritten. I did a git stash but 3 files still were said
>> to be overwritten, and I simply deleted those. The pull then went on
>> uneventfully.
>>
>> On Jul 31, 2019, at 6:53 PM, Martin Čech  wrote:
>>
>> I see version 18.09 at http://galaxy.lappsgrid.org/ - are you trying to
>> update this instance to 19.01? Do you have any local changes or issues when
>> pulling new version?
>>
>> On Wed, Jul 31, 2019 at 12:36 PM Nancy Ide  wrote:
>>
>>> Hello
>>>
>>> Cookies were enabled—also I was updating from our galaxy instance for
>>> the LAPPS Grid, which is using version 19.01.
>>>
>>> On Jul 31, 2019, at 6:34 PM, Martin Čech  wrote:
>>>
>>> Hi Nancy,
>>>
>>> what versions of Galaxy did you update from and to? Please check if you
>>> have cookies enabled in your browser.
>>>
>>> Martin
>>>
>>> On Wed, Jul 31, 2019 at 9:45 AM Nancy Ide  wrote:
>>>
 Hello

 I am suddenly (after pulling a new version of galaxy) unable to install
 from the toolshed. The error is: Repository installation is not possible
 due to an invalid Galaxy URL: None. You may need to enable
 third-party cookies in your browser.

 Any idea how I can fix this?


 -

 Nancy Ide
 Professor of Computer Science

 Department of Computer Science
 Vassar College
 Poughkeepsie, New York 12604-0520
 USA

 tel: (+1 845) 437 5988
 fax: (+1 845) 437 7498
 email: i...@cs.vassar.edu
 http://www.cs.vassar.edu/~ide

 -




 ___
 Please keep all replies on the list by using "reply all"
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 and other Galaxy lists, please use the interface at:
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 To search Galaxy mailing lists use the unified search at:
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>>>
>>> -
>>>
>>> Nancy Ide
>>> Professor of Computer Science
>>>
>>> Department of Computer Science
>>> Vassar College
>>> Poughkeepsie, New York 12604-0520
>>> USA
>>>
>>> tel: (+1 845) 437 5988
>>> fax: (+1 845) 437 7498
>>> email: i...@cs.vassar.edu 
>>> http://www.cs.vassar.edu/~ide
>>>
>>> -
>>>
>>>
>>>
>>>
>>>
>> -
>>
>> Nancy Ide
>> Professor of Computer Science
>>
>> Department of Computer Science
>> Vassar College
>> Poughkeepsie, New York 12604-0520
>> USA
>>
>> tel: (+1 845) 437 5988
>> fax: (+1 845) 437 7498
>> email: i...@cs.vassar.edu 
>> http://www.cs.vassar.edu/~ide
>>
>> -
>>
>>
>>
>>
>>
> -
>
> Nancy Ide
> Professor of Computer Science
>
> Department of Computer Science
> Vassar College
> Poughkeepsie, New York 12604-0520
> USA
>
> tel: (+1 845) 437 5988
> fax: (+1 845) 437 7498
> email: i...@cs.vassar.edu 
> http://www.cs.vassar.edu/~ide
>
> -
>
>
>
>
>
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[galaxy-dev] Re: Error when installing from toolshed

[Nancy Ide]

I very much appreciate the offer, but unfortunately I have to leave now. I am 
at a conference in Florence and tomorrow is our demo at a workshop, so I would 
be unable to do it tomorrow either, but anytime Friday would work if that is 
possible.

We are now having the same problem on the jetstream instance, but earlier we 
were able to install with the beta installer although not the regular one. 
However, just now on my local instance I tried to use the installer again, but 
I can’t get even to the repository (there is a message that the repository 
queue was loaded and has 0 elements). When I click on the “Galaxy Main 
Toolshed” button I can select one of the options but nothing happens. This is 
also true now on our jetstream instance.


> On Jul 31, 2019, at 7:02 PM, Martin Čech  wrote:
> 
> Would you like to come to the admin channel so we can troubleshoot this 
> interactively? https://gitter.im/galaxyproject/admins 
> 
> 
> Martin
> 
> On Wed, Jul 31, 2019 at 12:56 PM Nancy Ide  > wrote:
> Please look at jetstream.lappsgrid.org  — 
> this is the development version I was using.
> 
> When I tried to pull from github it complained that some of my”untracked” 
> files would be overwritten. I did a git stash but 3 files still were said to 
> be overwritten, and I simply deleted those. The pull then went on 
> uneventfully.
> 
>> On Jul 31, 2019, at 6:53 PM, Martin Čech > > wrote:
>> 
>> I see version 18.09 at http://galaxy.lappsgrid.org/ 
>>  - are you trying to update this instance to 
>> 19.01? Do you have any local changes or issues when pulling new version?
>> 
>> On Wed, Jul 31, 2019 at 12:36 PM Nancy Ide > > wrote:
>> Hello
>> 
>> Cookies were enabled—also I was updating from our galaxy instance for the 
>> LAPPS Grid, which is using version 19.01.
>> 
>>> On Jul 31, 2019, at 6:34 PM, Martin Čech >> > wrote:
>>> 
>>> Hi Nancy,
>>> 
>>> what versions of Galaxy did you update from and to? Please check if you 
>>> have cookies enabled in your browser.
>>> 
>>> Martin
>>> 
>>> On Wed, Jul 31, 2019 at 9:45 AM Nancy Ide >> > wrote:
>>> Hello
>>> 
>>> I am suddenly (after pulling a new version of galaxy) unable to install 
>>> from the toolshed. The error is: Repository installation is not possible 
>>> due to an invalid Galaxy URL: None. You may need to enable 
>>> third-party cookies in your browser.
>>> 
>>> Any idea how I can fix this?
>>> 
>>> 
>>> -
>>> 
>>> Nancy Ide
>>> Professor of Computer Science
>>> 
>>> Department of Computer Science
>>> Vassar College
>>> Poughkeepsie, New York 12604-0520 
>>> USA
>>> 
>>> tel: (+1 845) 437 5988
>>> fax: (+1 845) 437 7498
>>> email: i...@cs.vassar.edu 
>>> http://www.cs.vassar.edu/~ide 
>>> 
>>> -
>>> 
>>> 
>>> 
>>> 
>>> ___
>>> Please keep all replies on the list by using "reply all"
>>> in your mail client.  To manage your subscriptions to this
>>> and other Galaxy lists, please use the interface at:
>>>   %(web_page_url)s
>>> 
>>> To search Galaxy mailing lists use the unified search at:
>>>   http://galaxyproject.org/search/ 
>> 
>> -
>> 
>> Nancy Ide
>> Professor of Computer Science
>> 
>> Department of Computer Science
>> Vassar College
>> Poughkeepsie, New York 12604-0520 
>> USA
>> 
>> tel: (+1 845) 437 5988
>> fax: (+1 845) 437 7498
>> email: i...@cs.vassar.edu 
>> http://www.cs.vassar.edu/~ide 
>> 
>> -
>> 
>> 
>> 
>> 
> 
> -
> 
> Nancy Ide
> Professor of Computer Science
> 
> Department of Computer Science
> Vassar College
> Poughkeepsie, New York 12604-0520 
> USA
> 
> tel: (+1 845) 437 5988
> fax: (+1 845) 437 7498
> email: i...@cs.vassar.edu 
> http://www.cs.vassar.edu/~ide 
> 
> -
> 
> 
> 
> 

-

Nancy Ide
Professor of Computer Science

Department of Computer Science
Vassar College
Poughkeepsie, New York 12604-0520 
USA

tel: (+1 845) 437 5988
fax: (+1 845) 437 7498
email: i...@cs.vassar.edu
http://www.cs.vassar.edu/~ide

-




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[galaxy-dev] Re: Error when installing from toolshed

[Martin Čech]

Would you like to come to the admin channel so we can troubleshoot this
interactively? https://gitter.im/galaxyproject/admins

Martin

On Wed, Jul 31, 2019 at 12:56 PM Nancy Ide  wrote:

> Please look at jetstream.lappsgrid.org — this is the development version
> I was using.
>
> When I tried to pull from github it complained that some of my”untracked”
> files would be overwritten. I did a git stash but 3 files still were said
> to be overwritten, and I simply deleted those. The pull then went on
> uneventfully.
>
> On Jul 31, 2019, at 6:53 PM, Martin Čech  wrote:
>
> I see version 18.09 at http://galaxy.lappsgrid.org/ - are you trying to
> update this instance to 19.01? Do you have any local changes or issues when
> pulling new version?
>
> On Wed, Jul 31, 2019 at 12:36 PM Nancy Ide  wrote:
>
>> Hello
>>
>> Cookies were enabled—also I was updating from our galaxy instance for the
>> LAPPS Grid, which is using version 19.01.
>>
>> On Jul 31, 2019, at 6:34 PM, Martin Čech  wrote:
>>
>> Hi Nancy,
>>
>> what versions of Galaxy did you update from and to? Please check if you
>> have cookies enabled in your browser.
>>
>> Martin
>>
>> On Wed, Jul 31, 2019 at 9:45 AM Nancy Ide  wrote:
>>
>>> Hello
>>>
>>> I am suddenly (after pulling a new version of galaxy) unable to install
>>> from the toolshed. The error is: Repository installation is not possible
>>> due to an invalid Galaxy URL: None. You may need to enable
>>> third-party cookies in your browser.
>>>
>>> Any idea how I can fix this?
>>>
>>>
>>> -
>>>
>>> Nancy Ide
>>> Professor of Computer Science
>>>
>>> Department of Computer Science
>>> Vassar College
>>> Poughkeepsie, New York 12604-0520
>>> USA
>>>
>>> tel: (+1 845) 437 5988
>>> fax: (+1 845) 437 7498
>>> email: i...@cs.vassar.edu
>>> http://www.cs.vassar.edu/~ide
>>>
>>> -
>>>
>>>
>>>
>>>
>>> ___
>>> Please keep all replies on the list by using "reply all"
>>> in your mail client.  To manage your subscriptions to this
>>> and other Galaxy lists, please use the interface at:
>>>   %(web_page_url)s
>>>
>>> To search Galaxy mailing lists use the unified search at:
>>>   http://galaxyproject.org/search/
>>>
>>
>> -
>>
>> Nancy Ide
>> Professor of Computer Science
>>
>> Department of Computer Science
>> Vassar College
>> Poughkeepsie, New York 12604-0520
>> USA
>>
>> tel: (+1 845) 437 5988
>> fax: (+1 845) 437 7498
>> email: i...@cs.vassar.edu 
>> http://www.cs.vassar.edu/~ide
>>
>> -
>>
>>
>>
>>
>>
> -
>
> Nancy Ide
> Professor of Computer Science
>
> Department of Computer Science
> Vassar College
> Poughkeepsie, New York 12604-0520
> USA
>
> tel: (+1 845) 437 5988
> fax: (+1 845) 437 7498
> email: i...@cs.vassar.edu 
> http://www.cs.vassar.edu/~ide
>
> -
>
>
>
>
>
___
Please keep all replies on the list by using "reply all"
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and other Galaxy lists, please use the interface at:
  %(web_page_url)s

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[galaxy-dev] Re: Error when installing from toolshed

[Nancy Ide]

Please look at jetstream.lappsgrid.org  — this 
is the development version I was using.

When I tried to pull from github it complained that some of my”untracked” files 
would be overwritten. I did a git stash but 3 files still were said to be 
overwritten, and I simply deleted those. The pull then went on uneventfully.

> On Jul 31, 2019, at 6:53 PM, Martin Čech  wrote:
> 
> I see version 18.09 at http://galaxy.lappsgrid.org/ 
>  - are you trying to update this instance to 
> 19.01? Do you have any local changes or issues when pulling new version?
> 
> On Wed, Jul 31, 2019 at 12:36 PM Nancy Ide  > wrote:
> Hello
> 
> Cookies were enabled—also I was updating from our galaxy instance for the 
> LAPPS Grid, which is using version 19.01.
> 
>> On Jul 31, 2019, at 6:34 PM, Martin Čech > > wrote:
>> 
>> Hi Nancy,
>> 
>> what versions of Galaxy did you update from and to? Please check if you have 
>> cookies enabled in your browser.
>> 
>> Martin
>> 
>> On Wed, Jul 31, 2019 at 9:45 AM Nancy Ide > > wrote:
>> Hello
>> 
>> I am suddenly (after pulling a new version of galaxy) unable to install from 
>> the toolshed. The error is: Repository installation is not possible due to 
>> an invalid Galaxy URL: None. You may need to enable third-party 
>> cookies in your browser.
>> 
>> Any idea how I can fix this?
>> 
>> 
>> -
>> 
>> Nancy Ide
>> Professor of Computer Science
>> 
>> Department of Computer Science
>> Vassar College
>> Poughkeepsie, New York 12604-0520 
>> USA
>> 
>> tel: (+1 845) 437 5988
>> fax: (+1 845) 437 7498
>> email: i...@cs.vassar.edu 
>> http://www.cs.vassar.edu/~ide 
>> 
>> -
>> 
>> 
>> 
>> 
>> ___
>> Please keep all replies on the list by using "reply all"
>> in your mail client.  To manage your subscriptions to this
>> and other Galaxy lists, please use the interface at:
>>   %(web_page_url)s
>> 
>> To search Galaxy mailing lists use the unified search at:
>>   http://galaxyproject.org/search/ 
> 
> -
> 
> Nancy Ide
> Professor of Computer Science
> 
> Department of Computer Science
> Vassar College
> Poughkeepsie, New York 12604-0520 
> USA
> 
> tel: (+1 845) 437 5988
> fax: (+1 845) 437 7498
> email: i...@cs.vassar.edu 
> http://www.cs.vassar.edu/~ide 
> 
> -
> 
> 
> 
> 

-

Nancy Ide
Professor of Computer Science

Department of Computer Science
Vassar College
Poughkeepsie, New York 12604-0520 
USA

tel: (+1 845) 437 5988
fax: (+1 845) 437 7498
email: i...@cs.vassar.edu
http://www.cs.vassar.edu/~ide

-




___
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  %(web_page_url)s

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/

[galaxy-dev] Re: Error when installing from toolshed

[Martin Čech]

I see version 18.09 at http://galaxy.lappsgrid.org/ - are you trying to
update this instance to 19.01? Do you have any local changes or issues when
pulling new version?

On Wed, Jul 31, 2019 at 12:36 PM Nancy Ide  wrote:

> Hello
>
> Cookies were enabled—also I was updating from our galaxy instance for the
> LAPPS Grid, which is using version 19.01.
>
> On Jul 31, 2019, at 6:34 PM, Martin Čech  wrote:
>
> Hi Nancy,
>
> what versions of Galaxy did you update from and to? Please check if you
> have cookies enabled in your browser.
>
> Martin
>
> On Wed, Jul 31, 2019 at 9:45 AM Nancy Ide  wrote:
>
>> Hello
>>
>> I am suddenly (after pulling a new version of galaxy) unable to install
>> from the toolshed. The error is: Repository installation is not possible
>> due to an invalid Galaxy URL: None. You may need to enable
>> third-party cookies in your browser.
>>
>> Any idea how I can fix this?
>>
>>
>> -
>>
>> Nancy Ide
>> Professor of Computer Science
>>
>> Department of Computer Science
>> Vassar College
>> Poughkeepsie, New York 12604-0520
>> USA
>>
>> tel: (+1 845) 437 5988
>> fax: (+1 845) 437 7498
>> email: i...@cs.vassar.edu
>> http://www.cs.vassar.edu/~ide
>>
>> -
>>
>>
>>
>>
>> ___
>> Please keep all replies on the list by using "reply all"
>> in your mail client.  To manage your subscriptions to this
>> and other Galaxy lists, please use the interface at:
>>   %(web_page_url)s
>>
>> To search Galaxy mailing lists use the unified search at:
>>   http://galaxyproject.org/search/
>>
>
> -
>
> Nancy Ide
> Professor of Computer Science
>
> Department of Computer Science
> Vassar College
> Poughkeepsie, New York 12604-0520
> USA
>
> tel: (+1 845) 437 5988
> fax: (+1 845) 437 7498
> email: i...@cs.vassar.edu 
> http://www.cs.vassar.edu/~ide
>
> -
>
>
>
>
>
___
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and other Galaxy lists, please use the interface at:
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[galaxy-dev] Re: Error when installing from toolshed

[Nancy Ide]

Hello

Cookies were enabled—also I was updating from our galaxy instance for the LAPPS 
Grid, which is using version 19.01.

> On Jul 31, 2019, at 6:34 PM, Martin Čech  wrote:
> 
> Hi Nancy,
> 
> what versions of Galaxy did you update from and to? Please check if you have 
> cookies enabled in your browser.
> 
> Martin
> 
> On Wed, Jul 31, 2019 at 9:45 AM Nancy Ide  > wrote:
> Hello
> 
> I am suddenly (after pulling a new version of galaxy) unable to install from 
> the toolshed. The error is: Repository installation is not possible due to an 
> invalid Galaxy URL: None. You may need to enable third-party cookies 
> in your browser.
> 
> Any idea how I can fix this?
> 
> 
> -
> 
> Nancy Ide
> Professor of Computer Science
> 
> Department of Computer Science
> Vassar College
> Poughkeepsie, New York 12604-0520 
> USA
> 
> tel: (+1 845) 437 5988
> fax: (+1 845) 437 7498
> email: i...@cs.vassar.edu 
> http://www.cs.vassar.edu/~ide 
> 
> -
> 
> 
> 
> 
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   %(web_page_url)s
> 
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/ 

-

Nancy Ide
Professor of Computer Science

Department of Computer Science
Vassar College
Poughkeepsie, New York 12604-0520 
USA

tel: (+1 845) 437 5988
fax: (+1 845) 437 7498
email: i...@cs.vassar.edu
http://www.cs.vassar.edu/~ide

-




___
Please keep all replies on the list by using "reply all"
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[galaxy-dev] Re: Error when installing from toolshed

[Martin Čech]

Hi Nancy,

what versions of Galaxy did you update from and to? Please check if you
have cookies enabled in your browser.

Martin

On Wed, Jul 31, 2019 at 9:45 AM Nancy Ide  wrote:

> Hello
>
> I am suddenly (after pulling a new version of galaxy) unable to install
> from the toolshed. The error is: Repository installation is not possible
> due to an invalid Galaxy URL: None. You may need to enable
> third-party cookies in your browser.
>
> Any idea how I can fix this?
>
>
> -
>
> Nancy Ide
> Professor of Computer Science
>
> Department of Computer Science
> Vassar College
> Poughkeepsie, New York 12604-0520
> USA
>
> tel: (+1 845) 437 5988
> fax: (+1 845) 437 7498
> email: i...@cs.vassar.edu
> http://www.cs.vassar.edu/~ide
>
> -
>
>
>
>
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   %(web_page_url)s
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/
>
___
Please keep all replies on the list by using "reply all"
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[galaxy-dev] Re: Error during tool installation: "inotify instance limit reached"

[Previti]

Thank you very much!

We have 19.01 running and the parameter that I had to put to "false" was
"watch_tools"

All the best,
Christopher


On 7/10/19 12:00 PM, Marius van den Beek wrote:
> Hi Christopher,
>
> you might want to turn off `watch_tools` if you are using it,
> this is only needed when using the pretty-much undocumented
> feature where you dump tools into a directory without registering them
> in any tool_conf.xml file. All other tool reloading happens by another
> means.
>
> Similarly, if you're using 19.05 and you don't manipulate the tool
> data table
> entries manually you can disable `watch_tool_data_dir`.
>
> Finally this is usually a sign of allocating too many processes and
> threads for your webservers/handlers/mules,
> as each one starts their own watchdog. A common misconception is that
> this makes Galaxy run faster.
> but it actually just increases the amount of concurrent requests
> Galaxy can handle.
>
> Best,
> Marius
>
> On Wed, 10 Jul 2019 at 11:43, Previti
>  > wrote:
>
> Dear all,
>
> I've been getting this error for a few days now, it basically prevents
> anything from being installed on the first go.
> Individual tools can be installed, but even then I have to try
> multiple
> times.
>
> Any ideas how to fix this?
>
> Cheers,
> Christopher
>
> The details from galaxy.log are (installing an older VCFtools
> package):
>
> 172.22.24.119 - - [10/Jul/2019:10:44:32 +0200] "POST
> /admin_toolshed/prepare_for_install HTTP/1.1" 200 -
> 
> "http://dkfzgalaxy.inet.dkfz-heidelberg.de/admin_toolshed/prepare_for_install?change
> 
> set_revisions=34a6b690e4b5&repository_ids=2ba42187f2588c4b&tool_shed_url=https%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F
> 
> "
> "Mozilla/5.0 (X11; Fedora; Linux x86_64; rv:67.0) Gecko/20100101
> Firefox/67.0"
> galaxy.tools.toolbox.base DEBUG 2019-07-10 10:44:55,592 Appending to
> tool panel section: NGS:VCFtools
> 172.22.24.119 - - [10/Jul/2019:10:44:58 +0200] "POST
> /admin_toolshed/repository_installation_status_updates HTTP/1.1" 200 -
> "http://dkfzgalaxy.inet.dkfz-heidelberg.de/admin_toolshed/prepare
> _for_install" "Mozilla/5.0 (X11; Fedora; Linux x86_64; rv:67.0)
> Gecko/20100101 Firefox/67.0"
> 172.22.24.119 - - [10/Jul/2019:10:45:01 +0200] "POST
> /admin_toolshed/repository_installation_status_updates HTTP/1.1" 200 -
> "http://dkfzgalaxy.inet.dkfz-heidelberg.de/admin_toolshed/prepare
> _for_install" "Mozilla/5.0 (X11; Fedora; Linux x86_64; rv:67.0)
> Gecko/20100101 Firefox/67.0"
> 172.22.24.119 - - [10/Jul/2019:10:44:55 +0200] "POST
> /admin_toolshed/install_repositories HTTP/1.1" 500 -
> 
> "http://dkfzgalaxy.inet.dkfz-heidelberg.de/admin_toolshed/prepare_for_install";
> "Moz
> illa/5.0 (X11; Fedora; Linux x86_64; rv:67.0) Gecko/20100101
> Firefox/67.0"
> *Error - : inotify instance limit reached*
> URL:
> 
> http://dkfzgalaxy.inet.dkfz-heidelberg.de/admin_toolshed/install_repositories
> File
> '/opt/galaxy/galaxy/lib/galaxy/web/framework/middleware/error.py',
> line 154 in __call__
>   app_iter = self.application(environ, sr_checker)
> File
> '/opt/galaxy/galaxy/.venv/lib/python2.7/site-packages/paste/recursive.py',
> line 85 in __call__
>   return self.application(environ, start_response)
> File
> 
> '/opt/galaxy/galaxy/.venv/lib/python2.7/site-packages/paste/httpexceptions.py',
> line 640 in __call__
>   return self.application(environ, start_response)
> File '/opt/galaxy/galaxy/lib/galaxy/web/framework/base.py', line
> 143 in
> __call__
>   return self.handle_request(environ, start_response)
> File '/opt/galaxy/galaxy/lib/galaxy/web/framework/base.py', line
> 222 in
> handle_request
>   body = method(trans, **kwargs)
> File '/opt/galaxy/galaxy/lib/galaxy/web/framework/decorators.py', line
> 101 in decorator
>   return func(self, trans, *args, **kwargs)
> File
> 
> '/opt/galaxy/galaxy/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py',
> line 575 in install_repositories
>   reinstalling=reinstalling,
> File
> '/opt/galaxy/galaxy/lib/tool_shed/galaxy_install/install_manager.py',
> line 846 in install_repositories
>   tool_panel_section_mapping=tool_panel_section_mapping)
> File
> '/opt/galaxy/galaxy/lib/tool_shed/galaxy_install/install_manager.py',
> line 893 in install_tool_shed_repository
>   tool_panel_section_mapping=tool_panel_section_mapping)
> File
> '/opt/galaxy/galaxy/lib/tool_shed/galaxy_install/install_manager.py',
> line 544 in __handle_repository_contents
>   repository_tools_tups = irmm.get

[galaxy-dev] Re: Error during tool installation: "inotify instance limit reached"

[Marius van den Beek]

Hi Christopher,

you might want to turn off `watch_tools` if you are using it,
this is only needed when using the pretty-much undocumented
feature where you dump tools into a directory without registering them
in any tool_conf.xml file. All other tool reloading happens by another
means.

Similarly, if you're using 19.05 and you don't manipulate the tool data
table
entries manually you can disable `watch_tool_data_dir`.

Finally this is usually a sign of allocating too many processes and threads
for your webservers/handlers/mules,
as each one starts their own watchdog. A common misconception is that this
makes Galaxy run faster.
but it actually just increases the amount of concurrent requests Galaxy can
handle.

Best,
Marius

On Wed, 10 Jul 2019 at 11:43, Previti <
christopher.prev...@dkfz-heidelberg.de> wrote:

> Dear all,
>
> I've been getting this error for a few days now, it basically prevents
> anything from being installed on the first go.
> Individual tools can be installed, but even then I have to try multiple
> times.
>
> Any ideas how to fix this?
>
> Cheers,
> Christopher
>
> The details from galaxy.log are (installing an older VCFtools package):
>
> 172.22.24.119 - - [10/Jul/2019:10:44:32 +0200] "POST
> /admin_toolshed/prepare_for_install HTTP/1.1" 200 -
> "
> http://dkfzgalaxy.inet.dkfz-heidelberg.de/admin_toolshed/prepare_for_install?change
>
> set_revisions=34a6b690e4b5&repository_ids=2ba42187f2588c4b&tool_shed_url=https%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F
> 
> "
> "Mozilla/5.0 (X11; Fedora; Linux x86_64; rv:67.0) Gecko/20100101
> Firefox/67.0"
> galaxy.tools.toolbox.base DEBUG 2019-07-10 10:44:55,592 Appending to
> tool panel section: NGS:VCFtools
> 172.22.24.119 - - [10/Jul/2019:10:44:58 +0200] "POST
> /admin_toolshed/repository_installation_status_updates HTTP/1.1" 200 -
> "http://dkfzgalaxy.inet.dkfz-heidelberg.de/admin_toolshed/prepare
> _for_install" "Mozilla/5.0 (X11; Fedora; Linux x86_64; rv:67.0)
> Gecko/20100101 Firefox/67.0"
> 172.22.24.119 - - [10/Jul/2019:10:45:01 +0200] "POST
> /admin_toolshed/repository_installation_status_updates HTTP/1.1" 200 -
> "http://dkfzgalaxy.inet.dkfz-heidelberg.de/admin_toolshed/prepare
> _for_install" "Mozilla/5.0 (X11; Fedora; Linux x86_64; rv:67.0)
> Gecko/20100101 Firefox/67.0"
> 172.22.24.119 - - [10/Jul/2019:10:44:55 +0200] "POST
> /admin_toolshed/install_repositories HTTP/1.1" 500 -
> "
> http://dkfzgalaxy.inet.dkfz-heidelberg.de/admin_toolshed/prepare_for_install
> "
> "Moz
> illa/5.0 (X11; Fedora; Linux x86_64; rv:67.0) Gecko/20100101 Firefox/67.0"
> *Error - : inotify instance limit reached*
> URL:
>
> http://dkfzgalaxy.inet.dkfz-heidelberg.de/admin_toolshed/install_repositories
> File '/opt/galaxy/galaxy/lib/galaxy/web/framework/middleware/error.py',
> line 154 in __call__
>   app_iter = self.application(environ, sr_checker)
> File
> '/opt/galaxy/galaxy/.venv/lib/python2.7/site-packages/paste/recursive.py',
> line 85 in __call__
>   return self.application(environ, start_response)
> File
>
> '/opt/galaxy/galaxy/.venv/lib/python2.7/site-packages/paste/httpexceptions.py',
> line 640 in __call__
>   return self.application(environ, start_response)
> File '/opt/galaxy/galaxy/lib/galaxy/web/framework/base.py', line 143 in
> __call__
>   return self.handle_request(environ, start_response)
> File '/opt/galaxy/galaxy/lib/galaxy/web/framework/base.py', line 222 in
> handle_request
>   body = method(trans, **kwargs)
> File '/opt/galaxy/galaxy/lib/galaxy/web/framework/decorators.py', line
> 101 in decorator
>   return func(self, trans, *args, **kwargs)
> File
>
> '/opt/galaxy/galaxy/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py',
> line 575 in install_repositories
>   reinstalling=reinstalling,
> File
> '/opt/galaxy/galaxy/lib/tool_shed/galaxy_install/install_manager.py',
> line 846 in install_repositories
>   tool_panel_section_mapping=tool_panel_section_mapping)
> File
> '/opt/galaxy/galaxy/lib/tool_shed/galaxy_install/install_manager.py',
> line 893 in install_tool_shed_repository
>   tool_panel_section_mapping=tool_panel_section_mapping)
> File
> '/opt/galaxy/galaxy/lib/tool_shed/galaxy_install/install_manager.py',
> line 544 in __handle_repository_contents
>   repository_tools_tups = irmm.get_repository_tools_tups()
> File
>
> '/opt/galaxy/galaxy/lib/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py',
> line 75 in get_repository_tools_tups
>   tool = self.app.toolbox.load_tool(os.path.abspath(load_relative_path),
> guid=guid, use_cached=False)
> File '/opt/galaxy/galaxy/lib/galaxy/tools/toolbox/base.py', line 766 in
> load_tool
>   self.watch_tool(tool)
> File '/opt/galaxy/galaxy/lib/galaxy/tools/toolbox/base.py', line 774 in
> watch_tool
>   self._tool_watcher.watch_file(tool.config_file, tool.id)
> File '/opt/galaxy/ga

[galaxy-dev] Re: Error

[Nancy Ide]

PS Same error ("Conda dependency seemingly installed but failed to build job 
environment.”) 
running Estimate parameters tool on our Jetstream instance.

> On Jul 7, 2019, at 3:06 PM, ide  wrote:
> 
> Hi all
> 
> Now that GCC is over I wonder if we could resolve the problem from our 
> discussion below. We have tried everything but nothing helps. We really need 
> to get this solved... 
> 
> On another note, I have a local Galaxy instance that cannot run certain of 
> the machine learning tools from the tool shed because they require a certain 
> module (imblearn in this case), but I get this error:
> 
>  ERROR: Could not find a version that satisfies the requirement 
> scikit-learn>=0.21 (from imbalanced-learn) (from versions: 0.9, 0.10, 0.11, 
> 0.12, 0.12.1, 0.13, 0.13.1, 0.14, 0.14.1, 0.15.0b1, 0.15.0b2, 0.15.0, 0.15.1, 
> 0.15.2, 0.16b1, 0.16.0, 0.16.1, 0.17b1, 0.17, 0.17.1, 0.18rc2, 0.18, 0.18.1, 
> 0.18.2, 0.19b2, 0.19.0, 0.19.1, 0.19.2, 0.20rc1, 0.20.0, 0.20.1, 0.20.2, 
> 0.20.3, 0.21rc2)
> ERROR: No matching distribution found for scikit-learn>=0.21 (from 
> imbalanced-learn)
> 
> scikit-learn is installed in python2.7 but it is version .20.3 (pip install 
> -U scikit-learn gives Requirement already up-to-date: scikit-learn in 
> ./.venv/lib/python2.7/site-packages (0.20.3)
> 
> 
> I assume that Python 2.7 does not work with version .21. 
> 
> Interestingly, the tools requiring imblearn work on our development Galaxy 
> instance at jetstream.galaxy.org . There, 
> Python 2.7 has a similarly old (.20.2) version of scikit-learn, and no 
> version installed for Python3. 
> 
> In any case, I have googled this error and discovered that there has never 
> been a good answer on forums such as stackoverflow. So if you have an idea 
> I'd be most grateful.
> 
> Thanks!
> 
>> Begin forwarded message:
>> 
>> From: Keith Suderman mailto:suder...@cs.vassar.edu>>
>> Subject: Re: [galaxy-dev] Error
>> Date: June 27, 2019 at 4:23:06 PM EDT
>> To: Pietro Mandreoli > >, Björn Grüning 
>> mailto:bjoern.gruen...@gmail.com>>
>> Cc: Ide Nancy mailto:i...@cs.vassar.edu>>, 
>> galaxy-dev@lists.galaxyproject.org 
>> 
>> 
>> Hi Pietro,
>> 
>> I suspect the package is broken.  The anaconda.org  
>> server is available, but the libgcc-ng file is not where the package expects 
>> it to be.
>> 
>> I followed your suggestion and it worked... sort of. At least it exposed 
>> another error, actually the same problem but with numpy... So I applied the 
>> same solution and that worked... sort of.  Now the error is:
>> 
>>>Traceback (most recent call last):
>>>  File 
>>> "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py",
>>>  line 411, in __get__
>>>val = instance.__dict__[self.name]
>>>KeyError: 'size'
>>> 
>>>During handling of the above exception, another exception occurred:
>>> 
>>>Traceback (most recent call last):
>>>  File 
>>> "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/exceptions.py",
>>>  line 1043, in __call__
>>>return func(*args, **kwargs)
>>>  File 
>>> "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/cli/main.py",
>>>  line 84, in _main
>>>exit_code = do_call(args, p)
>>>  File 
>>> "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/cli/conda_argparse.py",
>>>  line 82, in do_call
>>>exit_code = getattr(module, func_name)(args, parser)
>>>  File 
>>> "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/cli/main_create.py",
>>>  line 37, in execute
>>>install(args, parser, 'create')
>>>  File 
>>> "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/cli/install.py",
>>>  line 304, in install
>>>handle_txn(unlink_link_transaction, prefix, args, newenv)
>>>  File 
>>> "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/cli/install.py",
>>>  line 320, in handle_txn
>>>unlink_link_transaction.print_transaction_summary()
>>>  File 
>>> "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/core/link.py",
>>>  line 877, in print_transaction_summary
>>>change_report_str = self._change_report_str(change_report)
>>>  File 
>>> "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/core/link.py",
>>>  line 926, in _change_report_str
>>>size = prec.size
>>>  File 
>>> "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py",
>>>  line 417, in __get__
>>>raise AttributeError("A value for {0} has not been 
>>> set".format(self.name))
>>>AttributeError: A value for size has not been set
>> 

[galaxy-dev] Re: Error

[Keith Suderman]

Hi Pietro,

I suspect the package is broken.  The anaconda.org server is available, but the 
libgcc-ng file is not where the package expects it to be.

I followed your suggestion and it worked... sort of. At least it exposed 
another error, actually the same problem but with numpy... So I applied the 
same solution and that worked... sort of.  Now the error is:

> Traceback (most recent call last):
>   File 
> "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py",
>  line 411, in __get__
> val = instance.__dict__[self.name]
> KeyError: 'size'
> 
> During handling of the above exception, another exception occurred:
> 
> Traceback (most recent call last):
>   File 
> "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/exceptions.py",
>  line 1043, in __call__
> return func(*args, **kwargs)
>   File 
> "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/cli/main.py",
>  line 84, in _main
> exit_code = do_call(args, p)
>   File 
> "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/cli/conda_argparse.py",
>  line 82, in do_call
> exit_code = getattr(module, func_name)(args, parser)
>   File 
> "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/cli/main_create.py",
>  line 37, in execute
> install(args, parser, 'create')
>   File 
> "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/cli/install.py",
>  line 304, in install
> handle_txn(unlink_link_transaction, prefix, args, newenv)
>   File 
> "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/cli/install.py",
>  line 320, in handle_txn
> unlink_link_transaction.print_transaction_summary()
>   File 
> "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/core/link.py",
>  line 877, in print_transaction_summary
> change_report_str = self._change_report_str(change_report)
>   File 
> "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/core/link.py",
>  line 926, in _change_report_str
> size = prec.size
>   File 
> "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py",
>  line 417, in __get__
> raise AttributeError("A value for {0} has not been 
> set".format(self.name))
> AttributeError: A value for size has not been set

The full Galaxy log is attached.

Cheers,
Keith

> On Jun 26, 2019, at 7:31 AM, Pietro Mandreoli 
>  wrote:
> 
> Hi,
> probably the package is broken see 
> https://anaconda.org/conda-forge/libgcc-ng/files .
> Try to install the previous version manually, activating conda and then the 
> conda environment of the tool.
> 
> commands:
> source _conda/bin/activate to activate CONDA
> cd _conda/envs 
> 
> source activate  
> 
> then conda install  -c 
> 
> Best regards, 
> 
> PM
> 
> Il 25/06/19 22:59, Nancy Ide   ha scritto: 
>> 
>> I get this error when trying to run "Plot confusion matrix, precision, 
>> recall and ROC and AUC curves":
>> 
>> 
>>> CondaError: CondaHTTPError: HTTP 404 NOT FOUND for url 
>>> >>  
>>> >
>> 
>> 
>> as the file libgcc-ng-7.3.0-hdf63c60_0.tar.bz2 does not exist in 
>> https://conda.anaconda.org/conda-forge/linux-64/ 
>> 
>> 
>> 
>>  
>> 
>> 
>> Please help!
>> 
>> Thanks
>> -
>> 
>> Nancy Ide
>> Professor of Computer Science
>> 
>> Department of Computer Science
>> Vassar College
>> Poughkeepsie, New York 12604-0520 
>> USA
>> 
>> tel: (+1 845) 437 5988
>> fax: (+1 845) 437 7498
>> email: i...@cs.vassar.edu
>> http://www.cs.vassar.edu/~ide
>> 
>> -
>> 
>> 
>> 
>> 
>> 
>> ___
>> Please keep all replies on the list by using "reply all"
>> in your mail client. To manage your subscriptions to this
>> and other Galaxy lists, please use the interface at:
>> %(web_page_url)s
>> 
>> To search Galaxy mailing lists use the unified search at:
>> http://galaxyproject.org/search/
>> 
>> 
> 
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>  %(web_page_url)s
> 
> To search Galaxy mailing lists use the unified search at:
>  http://galaxyproject.org/search/
Starting server in PID 14373.
serving on 0.0.0.0:8000 view at http://127.0.0.1:8000
73.16.113.171 - - [27/Jun/2

[galaxy-dev] Re: Error

[ide]

Unfortunately still the same error! Trying Pietro’s solution.

> On Jun 26, 2019, at 5:57 AM, Björn Grüning  wrote:
> 
> Hi Nancy,
> 
> this looks like a timout during a download of conda packages.
> 
> I assume anaconda.org had some hiccups, please try again. Those URLs should 
> exists.
> 
> Ciao,
> Bjoern
> 
> Am 25.06.19 um 22:59 schrieb Nancy Ide:
>> ___
>> Please keep all replies on the list by using "reply all"
>> in your mail client.  To manage your subscriptions to this
>> and other Galaxy lists, please use the interface at:
>>   %(web_page_url)s
>> To search Galaxy mailing lists use the unified search at:
>>   http://galaxyproject.org/search/

-

Nancy Ide
Professor of Computer Science

Department of Computer Science
Vassar College
Poughkeepsie, New York 12604-0520 
USA

tel: (+1 845) 437 5988
fax: (+1 845) 437 7498
email: i...@cs.vassar.edu
http://www.cs.vassar.edu/~ide

-



___
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[galaxy-dev] Re: Error

[Pietro Mandreoli]

Hi,
probably the package is broken see 
https://anaconda.org/conda-forge/libgcc-ng/files .
Try to install the previous version manually, activating conda and then the 
conda environment of the tool.

commands:
source _conda/bin/activate to activate CONDA
cd _conda/envs 

source activate  

then conda install  -c 

Best regards, 

PM

Il 25/06/19 22:59, Nancy Ide   ha scritto: 
> 
> I get this error when trying to run "Plot confusion matrix, precision, recall 
> and ROC and AUC curves":
> 
> 
> > CondaError: CondaHTTPError: HTTP 404 NOT FOUND for url 
> >  >  
> > >
> 
> 
> as the file libgcc-ng-7.3.0-hdf63c60_0.tar.bz2 does not exist in 
> https://conda.anaconda.org/conda-forge/linux-64/ 
> 
> 
> 
>   
> 
> 
> Please help!
> 
> Thanks
> -
> 
> Nancy Ide
> Professor of Computer Science
> 
> Department of Computer Science
> Vassar College
> Poughkeepsie, New York 12604-0520 
> USA
> 
> tel: (+1 845) 437 5988
> fax: (+1 845) 437 7498
> email: i...@cs.vassar.edu
> http://www.cs.vassar.edu/~ide
> 
> -
> 
> 
> 
> 
> 
> ___
> Please keep all replies on the list by using "reply all"
> in your mail client. To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>  %(web_page_url)s
> 
> To search Galaxy mailing lists use the unified search at:
>  http://galaxyproject.org/search/
> 
> 

___
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in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
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To search Galaxy mailing lists use the unified search at:
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[galaxy-dev] Re: Error

[Björn Grüning]

Hi Nancy,

this looks like a timout during a download of conda packages.

I assume anaconda.org had some hiccups, please try again. Those URLs 
should exists.


Ciao,
Bjoern

Am 25.06.19 um 22:59 schrieb Nancy Ide:

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