Hi Peter,
this error on occurs on push, because only during push to master the TS
upload is triggered.
This error is directly from the TS and this is the reason you don't see
it before.
You need to include the tool_data_table_conf.xml.sample in your
repository, referencing your all_fasta data table.
To make it more obvious planemo should detect this error before
uploading to the TS.
See here: https://github.com/galaxyproject/planemo/issues/531
Hope this helps,
Bjoern
On 11.08.2016 15:07, Peter van Heusden wrote:
Hi everyone
We maintain a tools collection on Github for tools that are not yet
(or will never be) added to tools-iuc:
https://github.com/SANBI-SA/tools-sanbi-uwc
I tried copying the .travis.yml from tools-iuc to our repository, and
it largely works, except for the planemo upload part, which fails with
this error:
Repository created
cd '/home/pvh/Documents/code/SANBI/pilon/tools-sanbi-uwc/tools/pilon'
&& git rev-parse HEAD
cd '/home/pvh/Documents/code/SANBI/pilon/tools-sanbi-uwc/tools/pilon'
&& git diff --quiet
Could not update pilon
Unexpected response from galaxy: 500: {"content_alert": "", "err_msg":
"Metadata may have been defined for some items in revision
'f2477672a950'. Correct the following problems if necessary and reset
metadata.pilon.xml<\/b> - This file requires an entry in the
tool_data_table_conf.xml file. Upload a file named
tool_data_table_conf.xml.sample to the repository that includes the
required entry to correct this error."}
This is related to the pilon tool in that repo (tools/pilon). The tool
in question optionally uses a dataset from all_fasta, I'm not sure if
that is relevant for the error. BTW this error happened on push, not
on PR.
Any ideas?
Thanks,
Peter
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