Re: [galaxy-dev] job_conf.xml and nativespecification

2016-09-14 Thread Björn Grüning
Hi Laure,

a hacky way it to use dynamic job destinations:

https://wiki.galaxyproject.org/Admin/Config/Jobs#Dynamic_Destination_Mapping

You can get the username via python and change "nativeSpecification" on
demand.

Hope this helps,
Bjoern

Am 14.09.2016 um 17:07 schrieb Laure QUINTRIC:
> Hi galaxy users,
> 
> while using galaxy with drmaa and real user on drm system, I would like
> to know if there's a way to set the variable PBS_O_LOGNAME to the real
> user name in the job_conf.xml :
> 
> -v PBS_O_LOGNAME=[REAL_USER_NAME??] -q
> test -l mem=100gb 
> 
> Thank you,
> 
> Laure
> 
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[galaxy-dev] job_conf.xml and nativespecification

2016-09-14 Thread Laure QUINTRIC

Hi galaxy users,

while using galaxy with drmaa and real user on drm system, I would like 
to know if there's a way to set the variable PBS_O_LOGNAME to the real 
user name in the job_conf.xml :


-v PBS_O_LOGNAME=[REAL_USER_NAME??] -q 
test -l mem=100gb 


Thank you,

Laure

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