Re: [galaxy-user] Infinite TopHat run

2012-10-08 Thread David PANG
Hi, there,

I just got two genome-wide Bisulfite sequences from BGI and start to
analyze the data.

I am trying to use Galaxy; but I find there is no such platform available.
Does anybody know where I can find this kind platform at Galaxy or other
places.

Thanks

David

On Fri, Oct 5, 2012 at 3:53 PM, Jonsson, Philip pkjon...@central.uh.eduwrote:

 I am running Galaxy online, excuting TopHat on a fastq file, something
 which I previously have done without problems. This time, my data file is
 maybe double the size and does not seem to ever get done (I'm on the fourth
 day or so). Previously I have never experienced that this has taken more
 than 24 hrs. Any idea what could be going on?

 /Philip

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-- 
David PANG, Ph.D.

Department of Plant and Soil Science,
Texas Tech University
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[galaxy-user] How to do BLAST on Galaxy sever?

2012-02-09 Thread David PANG
Hi, Everybody,

I uploaded two complete genome sequences and hope to BLAST homologs from
both genome.

Does anybody know how to do BLAST search on galaxy?

Thanks

David
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