Re: [galaxy-user] Installing Galaxy and Hooking into a SGE Cluster
On 23 August 2012 14:39, John Jones mr.johnjo...@gmail.com wrote: [...] knew what protection there is for the developers of software if anyone can charge, say, $1000 for an alignment using free tools that takes only an hour to run. Many open source licenses will permit anyone to charge for redistributing the software and/or reselling services regarding the software. It is up to the users of the software to realize that they do not need to pay fees, which I think makes a lot of sense because the only other option would be to sue license violators. At least I cannot afford such a thing. Making money out of open source software is also not a bad thing. You can get Linux for free, or you can pay RedHat many monies for also receiving additional services. You can install Darwin for free, or you pay and get Apple's extensions on top of it. Best, Joachim ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-user] Asynchronous data source
Hello! I am adding support for Galaxy's asynchronous data sources to a server of mine, but I cannot get Galaxy to retrieve the actual data from it. So far, I have added a data source tool to my Galaxy installation which links out to my server. There I track the URL that is provided by Galaxy and later I use this URL to tell Galaxy that the data can be retrieved. At this point, Galaxy returns an HTML document to me, which says (excerpt): [...] pThe following job has been successfully added to the queue:/p div style=padding: 10pxb 1: testserver/b/div p You can check the status of queued jobs and view the resulting data by refreshing the bHistory/b pane. When the job has been run the status will change from 'running' to 'finished' if completed successfully or 'error' if problems were encountered. /p [...] I just discard this HTML. When I then go back to my Galaxy server, nothing has happened. Even when I refresh, I do not see any job pending. Does anyone know why Galaxy would not retrieve the data? Do I really have to show the HTML that is returned by Galaxy to make it work? Thanks, Joachim ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-user] Asynchronous data source
Hello, again, On 2011-11-13, at 10:47 AM, Joachim Baran wrote: Does anyone know why Galaxy would not retrieve the data? Do I really have to show the HTML that is returned by Galaxy to make it work? To follow up on my own email: it seems that the data is retrieved. I see that files with the right contents are created in galaxy-dist/database/files/000 So, what could be the reason that they do not show up in the web interface? Thanks, Joachim ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-user] Adding new data source
Hello! I have extended a service to support asynchronous data depositing (http://wiki.g2.bx.psu.edu/Admin/Internals/Data%20Sources), but I cannot quite figure out how to access it from the Galaxy web-site. Can someone point me to the right documentation for integrating the service into Galaxy, please? I seem to be out of luck with googling today.. Thanks, Joachim ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
