Re: [galaxy-user] An update to Galaxy CloudMan
Great work, Enis! On Nov 28, 2011, at 3:52 AM, Enis Afgan wrote: > A new version of CloudMan for running Galaxy on Amazon cloud has been > released today. Any new cluster will automatically use this version. Existing > clusters will have a link displayed at the top of the CloudMan console > offering to perform an automated update. > > The new version brings the following updates/features: > - Added ability to specify a path where Galaxy is installed as part of user > data (using galaxy_home key). This allows custom Galaxy application to be > installed and picked up by CloudMan instead of the default one. This works > across cluster invocations as well as for shared clusters. For a complete > list of user data options see http://wiki.g2.bx.psu.edu/Admin/Cloud/UserData > - Use /etc/profile instead of /etc/bash.bashrc for system wide shell logins > - Support for 3.0 Kernel on Ubuntu 11.10 for SGE. Contributed by Brad Chapman. > - Fix for SGE install after cloud-init has run and changed /etc/hosts > - post_start_service now runs if the script exists in the cluster bucket even > if no URL was provided as part of current user data > - Fix recognition of existing and attached file system volumes on instance > reboot > ___ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/ Ravi Madduri madd...@mcs.anl.gov ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-user] An update to Galaxy CloudMan
A new version of CloudMan for running Galaxy on Amazon cloud has been released today. Any new cluster will automatically use this version. Existing clusters will have a link displayed at the top of the CloudMan console offering to perform an automated update. The new version brings the following updates/features: - Added ability to specify a path where Galaxy is installed as part of user data (using galaxy_home key). This allows custom Galaxy application to be installed and picked up by CloudMan instead of the default one. This works across cluster invocations as well as for shared clusters. For a complete list of user data options see http://wiki.g2.bx.psu.edu/Admin/Cloud/UserData - Use /etc/profile instead of /etc/bash.bashrc for system wide shell logins - Support for 3.0 Kernel on Ubuntu 11.10 for SGE. Contributed by Brad Chapman. - Fix for SGE install after cloud-init has run and changed /etc/hosts - post_start_service now runs if the script exists in the cluster bucket even if no URL was provided as part of current user data - Fix recognition of existing and attached file system volumes on instance reboot ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-user] An update to Galaxy CloudMan
We'd like to announce an update to Galaxy CloudMan - a completely standalone version Galaxy on Amazon's cloud. The new version has been released that brings a number of improvements to the core functionality of CloudMan and expands the number of tools available within Galaxy CloudMan to match that of Galaxy Main. The new AMI ID is: ami-9a7485f3; complete instructions on how to use Galaxy CloudMan are available at usegalaxy.org/cloud. Some of the specific improvements now available include the following: - number of Galaxy tools available on the cloud mirrors that of Galaxy Main - the size of tool index files has grown from 40GB to 600GB - autoscale the size of your cluster (i.e., the size of your cloud cluster automatically adjusts to the amount of your workload) - termination of instances happens in parallel - automated update of CloudMan source code - ability to terminate and/or delete a cluster directly from the CloudMan web interface - tagging of cloud resources with cluster name - overall greater reliability and several bugs fixed - still built on top of the CloudBioLinux AMI so all of the NERC BioLinux tools are available at command line and also allowing CloudMan UI to extend usage scenarios for BioLinux tools in terms of cluster composition (full code changes available at https://bitbucket.org/galaxy/cloudman/changesets) ___ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user
