Re: [galaxy-user] Bowtie and BWA queue..other jobs dont
Thank you Jen. My job is still waiting and we shall consider a cloud instance. Antony On Mon, Jun 25, 2012 at 8:01 AM, Jennifer Jackson wrote: > Hi Antony, > > Jobs are sent to different clusters by type, so it is not unusual to see > some jobs complete quickly while others take longer. Jobs on the NGS > cluster (where Bowtie and BWA would be run) are processing as normal, but > Galaxy was very busy over the weekend and continues to be busy this > morning. Right now I see that you have only one NGS job in the queue - so > perhaps at least some of your work has completed since this question was > originally sent in on Saturday. > > If your work is urgent, a cloud instance is the recommended alternative > for large NGS jobs: > http://getgalaxy.org/cloud > > Best, > Jen > Galaxy team > > > On 6/23/12 5:47 PM, Antony Jose wrote: > > Hi, > Bowtie and BWA jobs seem to be forever on queue, but other jobs run > normally. Is there a problem or is this expected? Thank you. > Antony > > -- > Antony M Jose, > Dept. of Cell Biology & Molecular Genetics, > University of Maryland, > Rm 2116, Bioscience Research Building, > College Park, MD - 20742. > > > ___ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/ > > > -- > Jennifer Jacksonhttp://galaxyproject.org > > > > -- Antony M Jose, Dept. of Cell Biology & Molecular Genetics, University of Maryland, Rm 2116, Bioscience Research Building, College Park, MD - 20742. ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-user] Bowtie and BWA queue..other jobs dont
Hi Antony, Jobs are sent to different clusters by type, so it is not unusual to see some jobs complete quickly while others take longer. Jobs on the NGS cluster (where Bowtie and BWA would be run) are processing as normal, but Galaxy was very busy over the weekend and continues to be busy this morning. Right now I see that you have only one NGS job in the queue - so perhaps at least some of your work has completed since this question was originally sent in on Saturday. If your work is urgent, a cloud instance is the recommended alternative for large NGS jobs: http://getgalaxy.org/cloud Best, Jen Galaxy team On 6/23/12 5:47 PM, Antony Jose wrote: Hi, Bowtie and BWA jobs seem to be forever on queue, but other jobs run normally. Is there a problem or is this expected? Thank you. Antony -- Antony M Jose, Dept. of Cell Biology & Molecular Genetics, University of Maryland, Rm 2116, Bioscience Research Building, College Park, MD - 20742. ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ -- Jennifer Jackson http://galaxyproject.org ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-user] Bowtie and BWA queue..other jobs dont
Hi, Bowtie and BWA jobs seem to be forever on queue, but other jobs run normally. Is there a problem or is this expected? Thank you. Antony -- Antony M Jose, Dept. of Cell Biology & Molecular Genetics, University of Maryland, Rm 2116, Bioscience Research Building, College Park, MD - 20742. ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
