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On 9/26/13 7:29 AM, Malcolm Tobias wrote:
All,
My understanding is that the cleanup_datasets.py under
scripts/cleanup_datasets should be compatible with 'older' versions of
postgresql. I'm running 8.1 under CentOS 5. When I attempt to run the
scripts, it fails to clean any data sets. From the logs, I'm noticing
messages like:
database_connection contains an unknown SQLAlchemy database dialect:
postgresql
In my universe_wsgi.ini I've defined the database_connection as:
database_connection = postgresql://galaxy:@localhost:5432/galaxydb
and am confident it's working as Galaxy works fine, other than this
problem with deleting older datasets.
The pgcleanup.py script isn't an option, as it requires postgresql
=9.1. I noticed yet another version of cleanup_datasets.py under cron
which looks like it might be compatible with postgres, but am leary of
trying it as I'm not sure what it means by 1: database directory to
clean. I'm not sure what directory to point this to, nor am I
confident that just deleting data from the directory is the safest thing.
Any suggestions on how to proceed?
Thanks!
Malcolm
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Malcolm Tobias
314.362.1594
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