Re: [galaxy-user] upload more than 2GB data from local computer to local installation of galaxy

2014-02-24 Thread Martin Čech 
Hello,

Björn is exactly right. Link the data to Galaxy as described on the wiki
page he posted.

If you want to run FTP server with Galaxy (it is not included by default)
you have to install and configure it yourself. Here is a wikipage that will
show you how to do it.
https://wiki.galaxyproject.org/Admin/Config/Upload%20via%20FTP

However if you plan to work with such large files on local machine you
might easily end up having to wait for a loong time, depending on what
you plan to do with it and what are specifications of the machine. Consider
cloud (https://wiki.galaxyproject.org/CloudMan) or public instance (
usegalaxy.org).

Martin


On Mon, Feb 24, 2014 at 5:30 AM, Björn Grüning wrote:

>  Hi Do,
>
> If you are running a loacl instance and you are admin you can use the data
> library and upload or even better link your data into a data library.
>
> https://wiki.galaxyproject.org/Admin/DataLibraries/UploadingLibraryFiles
>
> Cheers,
> Bjoern
>
>  Hi,
> I am unable to upload more than 3 GB data from local computer to local
> installation of galaxy.
> How can I do that ?
> I saw many of the tutorials which says about online upload.
>
>  My Galaxy is running on 127.0.0.7:8080
> I tried FileZilla to upload file, but its says
> "Connection established, waiting for welcome message"
> and after some time
>
>
>
> ___
> The Galaxy User list should be used for the discussion of
> Galaxy analysis and other features on the public server
> at usegalaxy.org.  Please keep all replies on the list by
> using "reply all" in your mail client.  For discussion of
> local Galaxy instances and the Galaxy source code, please
> use the Galaxy Development list:
>
>   http://lists.bx.psu.edu/listinfo/galaxy-dev
>
> To manage your subscriptions to this and other Galaxy lists,
> please use the interface at:
>
>   http://lists.bx.psu.edu/
>
> To search Galaxy mailing lists use the unified search at:
>
>   http://galaxyproject.org/search/mailinglists/
>
>
>
> ___
> The Galaxy User list should be used for the discussion of
> Galaxy analysis and other features on the public server
> at usegalaxy.org.  Please keep all replies on the list by
> using "reply all" in your mail client.  For discussion of
> local Galaxy instances and the Galaxy source code, please
> use the Galaxy Development list:
>
>   http://lists.bx.psu.edu/listinfo/galaxy-dev
>
> To manage your subscriptions to this and other Galaxy lists,
> please use the interface at:
>
>   http://lists.bx.psu.edu/
>
> To search Galaxy mailing lists use the unified search at:
>
>   http://galaxyproject.org/search/mailinglists/
>
___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:

  http://galaxyproject.org/search/mailinglists/

Re: [galaxy-user] upload more than 2GB data from local computer to local installation of galaxy

2014-02-24 Thread Björn Grüning 

Hi Do,

If you are running a loacl instance and you are admin you can use the 
data library and upload or even better link your data into a data library.


https://wiki.galaxyproject.org/Admin/DataLibraries/UploadingLibraryFiles

Cheers,
Bjoern


Hi,
I am unable to upload more than 3 GB data from local computer to local 
installation of galaxy.

How can I do that ?
I saw many of the tutorials which says about online upload.

My Galaxy is running on 127.0.0.7:8080 
I tried FileZilla to upload file, but its says
"Connection established, waiting for welcome message"
and after some time



___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

   http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

   http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:

   http://galaxyproject.org/search/mailinglists/


___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:

  http://galaxyproject.org/search/mailinglists/

Re: [galaxy-user] upload more than 2GB data from local computer to local installation of galaxy

2014-02-24 Thread do kadya 
How can I create ftp for my local computer to upload data for local galaxy
installation ?

For current I may can use normal text upload but if I am having 10-20 GB
file then I will need FTP upload.

Waiting for positive reply.


Hi,
> I am unable to upload more than 3 GB data from local computer to local
> installation of galaxy.
> How can I do that ?
> I saw many of the tutorials which says about online upload.
>
> My Galaxy is running on 127.0.0.7:8080
> I tried FileZilla to upload file, but its says
> "Connection established, waiting for welcome message"
> and after some time
>
Error: Connection timed out
Error: Could not connect to server
Status: Waiting to retry...
Status: Connecting to 127.0.0.1:8080...
Status: Connection established, waiting for welcome message...
___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:

  http://galaxyproject.org/search/mailinglists/