[gentoo-commits] proj/sci:master commit in: dev-python/spikeinterface/

2023-12-14 Thread Horea Christian 
commit: 9ae7b9a12b89ec8fcb4473bd6912343c99f0f260
Author: Horea Christian  chymera  eu>
AuthorDate: Thu Dec 14 19:31:22 2023 +
Commit: Horea Christian  gmail  com>
CommitDate: Thu Dec 14 19:31:22 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=9ae7b9a1

dev-python/spikeinterface: add 0.99.1

Signed-off-by: Horea Christian  chymera.eu>

 .../spikeinterface/spikeinterface-0.99.1.ebuild| 53 ++
 1 file changed, 53 insertions(+)

diff --git a/dev-python/spikeinterface/spikeinterface-0.99.1.ebuild 
b/dev-python/spikeinterface/spikeinterface-0.99.1.ebuild
new file mode 100644
index 0..a428775eb
--- /dev/null
+++ b/dev-python/spikeinterface/spikeinterface-0.99.1.ebuild
@@ -0,0 +1,53 @@
+# Copyright 2021-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..11} )
+DISTUTILS_USE_PEP517=setuptools
+inherit distutils-r1
+
+DESCRIPTION="A Python-based module for creating flexible and robust spike 
sorting pipelines."
+HOMEPAGE="https://github.com/SpikeInterface/spikeinterface";
+SRC_URI="https://github.com/SpikeInterface/spikeinterface/archive/refs/tags/${PV}.tar.gz
 -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="extractors full test"
+# Reported upstream:
+# https://github.com/SpikeInterface/spikeinterface/issues/2339
+RESTRICT="test"
+
+RDEPEND="
+   dev-python/joblib[${PYTHON_USEDEP}]
+   dev-python/neo[${PYTHON_USEDEP}]
+   dev-python/numpy[${PYTHON_USEDEP}]
+   >=dev-python/probeinterface-0.2.16[${PYTHON_USEDEP}]
+   dev-python/threadpoolctl[${PYTHON_USEDEP}]
+   dev-python/tqdm[${PYTHON_USEDEP}]
+   extractors? (
+   dev-python/pynwb[${PYTHON_USEDEP}]
+   dev-python/lxml[${PYTHON_USEDEP}]
+   dev-python/scipy[${PYTHON_USEDEP}]
+   )
+   full? (
+   dev-python/distinctipy[${PYTHON_USEDEP}]
+   dev-python/h5py[${PYTHON_USEDEP}]
+   dev-python/matplotlib[${PYTHON_USEDEP}]
+   dev-python/networkx[${PYTHON_USEDEP}]
+   dev-python/pandas[${PYTHON_USEDEP}]
+   dev-python/scipy[${PYTHON_USEDEP}]
+   dev-python/xarray[${PYTHON_USEDEP}]
+   dev-python/zarr[${PYTHON_USEDEP}]
+   sci-libs/scikit-learn[${PYTHON_USEDEP}]
+   )
+"
+# Also wants:
+# # Extractors:
+#  MEArec
+#  pyedflib
+#  sonpy
+#  dev-python/hdf5storage (in ::science, masked)
+
+distutils_enable_tests pytest

[gentoo-commits] proj/sci:master commit in: dev-python/spikeinterface/

2023-05-02 Thread Horea Christian 
commit: 6c3f47bd802cd5b2aa1d504109165eb3536ec8da
Author: Horea Christian  chymera  eu>
AuthorDate: Tue May  2 22:51:10 2023 +
Commit: Horea Christian  gmail  com>
CommitDate: Tue May  2 22:51:10 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=6c3f47bd

dev-python/spikeinterface: enable py3.11

Signed-off-by: Horea Christian  chymera.eu>

 dev-python/spikeinterface/spikeinterface-0.96.1.ebuild | 2 +-
 dev-python/spikeinterface/spikeinterface-0.97.0.ebuild | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/dev-python/spikeinterface/spikeinterface-0.96.1.ebuild 
b/dev-python/spikeinterface/spikeinterface-0.96.1.ebuild
index 6dae8d191..ef6a472f4 100644
--- a/dev-python/spikeinterface/spikeinterface-0.96.1.ebuild
+++ b/dev-python/spikeinterface/spikeinterface-0.96.1.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=8
 
-PYTHON_COMPAT=( python3_{10..10} )
+PYTHON_COMPAT=( python3_{10..11} )
 DISTUTILS_USE_PEP517=setuptools
 inherit distutils-r1
 

diff --git a/dev-python/spikeinterface/spikeinterface-0.97.0.ebuild 
b/dev-python/spikeinterface/spikeinterface-0.97.0.ebuild
index 5c4e65481..2a25d4eee 100644
--- a/dev-python/spikeinterface/spikeinterface-0.97.0.ebuild
+++ b/dev-python/spikeinterface/spikeinterface-0.97.0.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=8
 
-PYTHON_COMPAT=( python3_{10..10} )
+PYTHON_COMPAT=( python3_{10..11} )
 DISTUTILS_USE_PEP517=setuptools
 inherit distutils-r1

[gentoo-commits] proj/sci:master commit in: dev-python/spikeinterface/

2023-05-02 Thread Horea Christian 
commit: c69efcc0dc70418ddcfdcf5b059cbb30ca804ce8
Author: Horea Christian  chymera  eu>
AuthorDate: Tue May  2 21:55:15 2023 +
Commit: Horea Christian  gmail  com>
CommitDate: Tue May  2 22:12:09 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=c69efcc0

dev-python/spikeinterface: brought back

This reverts commit 7deed86a843e45007093edc9893212aa7587c6b9.

Signed-off-by: Horea Christian  chymera.eu>

 dev-python/spikeinterface/metadata.xml | 19 +
 .../spikeinterface/spikeinterface-0.96.1.ebuild| 93 ++
 .../spikeinterface/spikeinterface-0.97.0.ebuild| 93 ++
 3 files changed, 205 insertions(+)

diff --git a/dev-python/spikeinterface/metadata.xml 
b/dev-python/spikeinterface/metadata.xml
new file mode 100644
index 0..f91c7a26c
--- /dev/null
+++ b/dev-python/spikeinterface/metadata.xml
@@ -0,0 +1,19 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+   
+   gen...@chymera.eu
+   Horea Christian
+   
+   
+   s...@gentoo.org
+   Gentoo Science Project
+   
+   
+   support for all extractors
+   support for all optional processing 
features
+   
+   
+   SpikeInterface/spikeinterface
+   
+

diff --git a/dev-python/spikeinterface/spikeinterface-0.96.1.ebuild 
b/dev-python/spikeinterface/spikeinterface-0.96.1.ebuild
new file mode 100644
index 0..6dae8d191
--- /dev/null
+++ b/dev-python/spikeinterface/spikeinterface-0.96.1.ebuild
@@ -0,0 +1,93 @@
+# Copyright 2021-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..10} )
+DISTUTILS_USE_PEP517=setuptools
+inherit distutils-r1
+
+DESCRIPTION="A Python-based module for creating flexible and robust spike 
sorting pipelines."
+HOMEPAGE="https://github.com/SpikeInterface/spikeinterface";
+SRC_URI="https://github.com/SpikeInterface/spikeinterface/archive/refs/tags/${PV}.tar.gz
 -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="extractors full test"
+
+RDEPEND="
+   dev-python/joblib[${PYTHON_USEDEP}]
+   dev-python/neo[${PYTHON_USEDEP}]
+   dev-python/numpy[${PYTHON_USEDEP}]
+   dev-python/probeinterface[${PYTHON_USEDEP}]
+   dev-python/threadpoolctl[${PYTHON_USEDEP}]
+   dev-python/tqdm[${PYTHON_USEDEP}]
+   extractors? (
+   dev-python/pynwb[${PYTHON_USEDEP}]
+   dev-python/lxml[${PYTHON_USEDEP}]
+   dev-python/scipy[${PYTHON_USEDEP}]
+   )
+   full? (
+   dev-python/distinctipy[${PYTHON_USEDEP}]
+   dev-python/h5py[${PYTHON_USEDEP}]
+   dev-python/matplotlib[${PYTHON_USEDEP}]
+   dev-python/networkx[${PYTHON_USEDEP}]
+   dev-python/pandas[${PYTHON_USEDEP}]
+   dev-python/scipy[${PYTHON_USEDEP}]
+   dev-python/xarray[${PYTHON_USEDEP}]
+   dev-python/zarr[${PYTHON_USEDEP}]
+   sci-libs/scikit-learn[${PYTHON_USEDEP}]
+   )
+"
+# Also wants:
+# # Extractors:
+#  MEArec
+#  pyedflib
+#  sonpy
+#  dev-python/hdf5storage (in ::science, masked)
+
+distutils_enable_tests pytest
+
+# Test failures reported upstream:
+# https://github.com/SpikeInterface/spikeinterface/issues/307
+python_test() {
+   # Network sandboxing, mostly (?)
+   local EPYTEST_DESELECT=(
+   
spikeinterface/core/tests/test_datasets.py::test_download_dataset
+   
spikeinterface/sortingcomponents/tests/test_motion_estimation.py::test_motion_functions
+   
spikeinterface/sortingcomponents/tests/test_motion_estimation.py::test_estimate_motion_rigid
+   
spikeinterface/sortingcomponents/tests/test_motion_estimation.py::test_estimate_motion_non_rigid
+   
spikeinterface/comparison/tests/test_multisortingcomparison.py::test_compare_multiple_sorters
+   
spikeinterface/curation/tests/test_sortingview_curation.py::test_sortingview_curation
+   
spikeinterface/exporters/tests/test_export_to_phy.py::test_export_to_phy
+   
spikeinterface/exporters/tests/test_export_to_phy.py::test_export_to_phy_by_sparsity
+   
spikeinterface/exporters/tests/test_report.py::test_export_report
+   spikeinterface/extractors/tests/test_neoextractors.py
+   
spikeinterface/sorters/tests/test_launcher.py::test_run_sorters_with_dict
+   
spikeinterface/sorters/tests/test_launcher.py::test_sorter_installation
+   
spikeinterface/sorters/tests/test_runsorter.py::test_run_sorter_local
+   
spikeinterface/sorters/tests/test_runsorter.py::test_run_sorter_docker
+   
spikeinterface/sorters/tests/test_runsorter.py::test_run_sorter_singularity
+   
spikeinterface/sorters/tests/test_si_based_sorters.py::SpykingCircus2SorterCommon

[gentoo-commits] proj/sci:master commit in: dev-python/spikeinterface/

2023-05-02 Thread Andrew Ammerlaan 
commit: 7deed86a843e45007093edc9893212aa7587c6b9
Author: Andrew Ammerlaan  gentoo  org>
AuthorDate: Tue May  2 12:43:50 2023 +
Commit: Andrew Ammerlaan  gentoo  org>
CommitDate: Tue May  2 12:43:50 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=7deed86a

dev-python/spikeinterface: treeclean

Signed-off-by: Andrew Ammerlaan  gentoo.org>

 dev-python/spikeinterface/metadata.xml | 19 -
 .../spikeinterface/spikeinterface-0.96.1.ebuild| 93 --
 .../spikeinterface/spikeinterface-0.97.0.ebuild| 93 --
 3 files changed, 205 deletions(-)

diff --git a/dev-python/spikeinterface/metadata.xml 
b/dev-python/spikeinterface/metadata.xml
deleted file mode 100644
index f91c7a26c..0
--- a/dev-python/spikeinterface/metadata.xml
+++ /dev/null
@@ -1,19 +0,0 @@
-
-http://www.gentoo.org/dtd/metadata.dtd";>
-
-   
-   gen...@chymera.eu
-   Horea Christian
-   
-   
-   s...@gentoo.org
-   Gentoo Science Project
-   
-   
-   support for all extractors
-   support for all optional processing 
features
-   
-   
-   SpikeInterface/spikeinterface
-   
-

diff --git a/dev-python/spikeinterface/spikeinterface-0.96.1.ebuild 
b/dev-python/spikeinterface/spikeinterface-0.96.1.ebuild
deleted file mode 100644
index 6dae8d191..0
--- a/dev-python/spikeinterface/spikeinterface-0.96.1.ebuild
+++ /dev/null
@@ -1,93 +0,0 @@
-# Copyright 2021-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..10} )
-DISTUTILS_USE_PEP517=setuptools
-inherit distutils-r1
-
-DESCRIPTION="A Python-based module for creating flexible and robust spike 
sorting pipelines."
-HOMEPAGE="https://github.com/SpikeInterface/spikeinterface";
-SRC_URI="https://github.com/SpikeInterface/spikeinterface/archive/refs/tags/${PV}.tar.gz
 -> ${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="extractors full test"
-
-RDEPEND="
-   dev-python/joblib[${PYTHON_USEDEP}]
-   dev-python/neo[${PYTHON_USEDEP}]
-   dev-python/numpy[${PYTHON_USEDEP}]
-   dev-python/probeinterface[${PYTHON_USEDEP}]
-   dev-python/threadpoolctl[${PYTHON_USEDEP}]
-   dev-python/tqdm[${PYTHON_USEDEP}]
-   extractors? (
-   dev-python/pynwb[${PYTHON_USEDEP}]
-   dev-python/lxml[${PYTHON_USEDEP}]
-   dev-python/scipy[${PYTHON_USEDEP}]
-   )
-   full? (
-   dev-python/distinctipy[${PYTHON_USEDEP}]
-   dev-python/h5py[${PYTHON_USEDEP}]
-   dev-python/matplotlib[${PYTHON_USEDEP}]
-   dev-python/networkx[${PYTHON_USEDEP}]
-   dev-python/pandas[${PYTHON_USEDEP}]
-   dev-python/scipy[${PYTHON_USEDEP}]
-   dev-python/xarray[${PYTHON_USEDEP}]
-   dev-python/zarr[${PYTHON_USEDEP}]
-   sci-libs/scikit-learn[${PYTHON_USEDEP}]
-   )
-"
-# Also wants:
-# # Extractors:
-#  MEArec
-#  pyedflib
-#  sonpy
-#  dev-python/hdf5storage (in ::science, masked)
-
-distutils_enable_tests pytest
-
-# Test failures reported upstream:
-# https://github.com/SpikeInterface/spikeinterface/issues/307
-python_test() {
-   # Network sandboxing, mostly (?)
-   local EPYTEST_DESELECT=(
-   
spikeinterface/core/tests/test_datasets.py::test_download_dataset
-   
spikeinterface/sortingcomponents/tests/test_motion_estimation.py::test_motion_functions
-   
spikeinterface/sortingcomponents/tests/test_motion_estimation.py::test_estimate_motion_rigid
-   
spikeinterface/sortingcomponents/tests/test_motion_estimation.py::test_estimate_motion_non_rigid
-   
spikeinterface/comparison/tests/test_multisortingcomparison.py::test_compare_multiple_sorters
-   
spikeinterface/curation/tests/test_sortingview_curation.py::test_sortingview_curation
-   
spikeinterface/exporters/tests/test_export_to_phy.py::test_export_to_phy
-   
spikeinterface/exporters/tests/test_export_to_phy.py::test_export_to_phy_by_sparsity
-   
spikeinterface/exporters/tests/test_report.py::test_export_report
-   spikeinterface/extractors/tests/test_neoextractors.py
-   
spikeinterface/sorters/tests/test_launcher.py::test_run_sorters_with_dict
-   
spikeinterface/sorters/tests/test_launcher.py::test_sorter_installation
-   
spikeinterface/sorters/tests/test_runsorter.py::test_run_sorter_local
-   
spikeinterface/sorters/tests/test_runsorter.py::test_run_sorter_docker
-   
spikeinterface/sorters/tests/test_runsorter.py::test_run_sorter_singularity
-   
spikeinterface/sorters/tests/test_si_based_sorters.py::SpykingCircus2SorterCommonTestSuite
-   
spikeinterface/sorters/tests

[gentoo-commits] proj/sci:master commit in: dev-python/spikeinterface/

2023-03-02 Thread Horea Christian 
commit: efd779b9c71210ac035d5299dd8024054cbf597f
Author: Horea Christian  chymera  eu>
AuthorDate: Thu Mar  2 16:52:39 2023 +
Commit: Horea Christian  gmail  com>
CommitDate: Thu Mar  2 16:52:39 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=efd779b9

dev-python/spikeinterface: add 0.97.0

Signed-off-by: Horea Christian  chymera.eu>

 .../spikeinterface/spikeinterface-0.97.0.ebuild| 93 ++
 1 file changed, 93 insertions(+)

diff --git a/dev-python/spikeinterface/spikeinterface-0.97.0.ebuild 
b/dev-python/spikeinterface/spikeinterface-0.97.0.ebuild
new file mode 100644
index 0..5c4e65481
--- /dev/null
+++ b/dev-python/spikeinterface/spikeinterface-0.97.0.ebuild
@@ -0,0 +1,93 @@
+# Copyright 2021-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..10} )
+DISTUTILS_USE_PEP517=setuptools
+inherit distutils-r1
+
+DESCRIPTION="A Python-based module for creating flexible and robust spike 
sorting pipelines."
+HOMEPAGE="https://github.com/SpikeInterface/spikeinterface";
+SRC_URI="https://github.com/SpikeInterface/spikeinterface/archive/refs/tags/${PV}.tar.gz
 -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="extractors full test"
+
+RDEPEND="
+   dev-python/joblib[${PYTHON_USEDEP}]
+   dev-python/neo[${PYTHON_USEDEP}]
+   dev-python/numpy[${PYTHON_USEDEP}]
+   >=dev-python/probeinterface-0.2.16[${PYTHON_USEDEP}]
+   dev-python/threadpoolctl[${PYTHON_USEDEP}]
+   dev-python/tqdm[${PYTHON_USEDEP}]
+   extractors? (
+   dev-python/pynwb[${PYTHON_USEDEP}]
+   dev-python/lxml[${PYTHON_USEDEP}]
+   dev-python/scipy[${PYTHON_USEDEP}]
+   )
+   full? (
+   dev-python/distinctipy[${PYTHON_USEDEP}]
+   dev-python/h5py[${PYTHON_USEDEP}]
+   dev-python/matplotlib[${PYTHON_USEDEP}]
+   dev-python/networkx[${PYTHON_USEDEP}]
+   dev-python/pandas[${PYTHON_USEDEP}]
+   dev-python/scipy[${PYTHON_USEDEP}]
+   dev-python/xarray[${PYTHON_USEDEP}]
+   dev-python/zarr[${PYTHON_USEDEP}]
+   sci-libs/scikit-learn[${PYTHON_USEDEP}]
+   )
+"
+# Also wants:
+# # Extractors:
+#  MEArec
+#  pyedflib
+#  sonpy
+#  dev-python/hdf5storage (in ::science, masked)
+
+distutils_enable_tests pytest
+
+# Test failures reported upstream:
+# https://github.com/SpikeInterface/spikeinterface/issues/307
+python_test() {
+   # Network sandboxing, mostly (?)
+   local EPYTEST_DESELECT=(
+   
spikeinterface/core/tests/test_datasets.py::test_download_dataset
+   
spikeinterface/sortingcomponents/tests/test_motion_estimation.py::test_motion_functions
+   
spikeinterface/sortingcomponents/tests/test_motion_estimation.py::test_estimate_motion_rigid
+   
spikeinterface/sortingcomponents/tests/test_motion_estimation.py::test_estimate_motion_non_rigid
+   
spikeinterface/comparison/tests/test_multisortingcomparison.py::test_compare_multiple_sorters
+   
spikeinterface/curation/tests/test_sortingview_curation.py::test_sortingview_curation
+   
spikeinterface/exporters/tests/test_export_to_phy.py::test_export_to_phy
+   
spikeinterface/exporters/tests/test_export_to_phy.py::test_export_to_phy_by_sparsity
+   
spikeinterface/exporters/tests/test_report.py::test_export_report
+   spikeinterface/extractors/tests/test_neoextractors.py
+   
spikeinterface/sorters/tests/test_launcher.py::test_run_sorters_with_dict
+   
spikeinterface/sorters/tests/test_launcher.py::test_sorter_installation
+   
spikeinterface/sorters/tests/test_runsorter.py::test_run_sorter_local
+   
spikeinterface/sorters/tests/test_runsorter.py::test_run_sorter_docker
+   
spikeinterface/sorters/tests/test_runsorter.py::test_run_sorter_singularity
+   
spikeinterface/sorters/tests/test_si_based_sorters.py::SpykingCircus2SorterCommonTestSuite
+   
spikeinterface/sorters/tests/test_si_based_sorters.py::Tridesclous2SorterCommonTestSuite::test_with_class
+   
spikeinterface/sorters/tests/test_si_based_sorters.py::Tridesclous2SorterCommonTestSuite::test_with_run
+   
spikeinterface/sortingcomponents/tests/test_clustering.py::test_find_cluster_from_peaks
+   
spikeinterface/sortingcomponents/tests/test_features_from_peaks.py::test_features_from_peaks
+   
spikeinterface/sortingcomponents/tests/test_peak_detection.py::test_detect_peaks
+   
spikeinterface/sortingcomponents/tests/test_peak_localization.py::test_localize_peaks
+   
spikeinterface/sortingcomponents/tests/test_peak_pipeline.py::test_run_peak_pipeline
+   
spikeinterface/sortingcomponents/tests/t

[gentoo-commits] proj/sci:master commit in: dev-python/spikeinterface/

2023-02-01 Thread Horea Christian 
commit: bdf4308195544e9082598647943e18e1fe6ee262
Author: Horea Christian  chymera  eu>
AuthorDate: Wed Feb  1 14:55:11 2023 +
Commit: Horea Christian  gmail  com>
CommitDate: Wed Feb  1 14:55:11 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=bdf43081

dev-python/spikeinterface: new package, add 0.96.1

Signed-off-by: Horea Christian  chymera.eu>

 dev-python/spikeinterface/metadata.xml | 19 +
 .../spikeinterface/spikeinterface-0.96.1.ebuild| 93 ++
 2 files changed, 112 insertions(+)

diff --git a/dev-python/spikeinterface/metadata.xml 
b/dev-python/spikeinterface/metadata.xml
new file mode 100644
index 0..f91c7a26c
--- /dev/null
+++ b/dev-python/spikeinterface/metadata.xml
@@ -0,0 +1,19 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+   
+   gen...@chymera.eu
+   Horea Christian
+   
+   
+   s...@gentoo.org
+   Gentoo Science Project
+   
+   
+   support for all extractors
+   support for all optional processing 
features
+   
+   
+   SpikeInterface/spikeinterface
+   
+

diff --git a/dev-python/spikeinterface/spikeinterface-0.96.1.ebuild 
b/dev-python/spikeinterface/spikeinterface-0.96.1.ebuild
new file mode 100644
index 0..6dae8d191
--- /dev/null
+++ b/dev-python/spikeinterface/spikeinterface-0.96.1.ebuild
@@ -0,0 +1,93 @@
+# Copyright 2021-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..10} )
+DISTUTILS_USE_PEP517=setuptools
+inherit distutils-r1
+
+DESCRIPTION="A Python-based module for creating flexible and robust spike 
sorting pipelines."
+HOMEPAGE="https://github.com/SpikeInterface/spikeinterface";
+SRC_URI="https://github.com/SpikeInterface/spikeinterface/archive/refs/tags/${PV}.tar.gz
 -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="extractors full test"
+
+RDEPEND="
+   dev-python/joblib[${PYTHON_USEDEP}]
+   dev-python/neo[${PYTHON_USEDEP}]
+   dev-python/numpy[${PYTHON_USEDEP}]
+   dev-python/probeinterface[${PYTHON_USEDEP}]
+   dev-python/threadpoolctl[${PYTHON_USEDEP}]
+   dev-python/tqdm[${PYTHON_USEDEP}]
+   extractors? (
+   dev-python/pynwb[${PYTHON_USEDEP}]
+   dev-python/lxml[${PYTHON_USEDEP}]
+   dev-python/scipy[${PYTHON_USEDEP}]
+   )
+   full? (
+   dev-python/distinctipy[${PYTHON_USEDEP}]
+   dev-python/h5py[${PYTHON_USEDEP}]
+   dev-python/matplotlib[${PYTHON_USEDEP}]
+   dev-python/networkx[${PYTHON_USEDEP}]
+   dev-python/pandas[${PYTHON_USEDEP}]
+   dev-python/scipy[${PYTHON_USEDEP}]
+   dev-python/xarray[${PYTHON_USEDEP}]
+   dev-python/zarr[${PYTHON_USEDEP}]
+   sci-libs/scikit-learn[${PYTHON_USEDEP}]
+   )
+"
+# Also wants:
+# # Extractors:
+#  MEArec
+#  pyedflib
+#  sonpy
+#  dev-python/hdf5storage (in ::science, masked)
+
+distutils_enable_tests pytest
+
+# Test failures reported upstream:
+# https://github.com/SpikeInterface/spikeinterface/issues/307
+python_test() {
+   # Network sandboxing, mostly (?)
+   local EPYTEST_DESELECT=(
+   
spikeinterface/core/tests/test_datasets.py::test_download_dataset
+   
spikeinterface/sortingcomponents/tests/test_motion_estimation.py::test_motion_functions
+   
spikeinterface/sortingcomponents/tests/test_motion_estimation.py::test_estimate_motion_rigid
+   
spikeinterface/sortingcomponents/tests/test_motion_estimation.py::test_estimate_motion_non_rigid
+   
spikeinterface/comparison/tests/test_multisortingcomparison.py::test_compare_multiple_sorters
+   
spikeinterface/curation/tests/test_sortingview_curation.py::test_sortingview_curation
+   
spikeinterface/exporters/tests/test_export_to_phy.py::test_export_to_phy
+   
spikeinterface/exporters/tests/test_export_to_phy.py::test_export_to_phy_by_sparsity
+   
spikeinterface/exporters/tests/test_report.py::test_export_report
+   spikeinterface/extractors/tests/test_neoextractors.py
+   
spikeinterface/sorters/tests/test_launcher.py::test_run_sorters_with_dict
+   
spikeinterface/sorters/tests/test_launcher.py::test_sorter_installation
+   
spikeinterface/sorters/tests/test_runsorter.py::test_run_sorter_local
+   
spikeinterface/sorters/tests/test_runsorter.py::test_run_sorter_docker
+   
spikeinterface/sorters/tests/test_runsorter.py::test_run_sorter_singularity
+   
spikeinterface/sorters/tests/test_si_based_sorters.py::SpykingCircus2SorterCommonTestSuite
+   
spikeinterface/sorters/tests/test_si_based_sorters.py::Tridesclous2SorterCommonTestSuite::test_with_class