commit: bbe535dab6b27aead446cd142b5385fb47f10496 Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> AuthorDate: Sun Jan 23 12:57:22 2022 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> CommitDate: Sun Jan 23 12:57:22 2022 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=bbe535da
sci-biology/conrad: remove ancient java package Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> profiles/package.mask | 2 -- sci-biology/conrad/conrad-1.ebuild | 52 -------------------------------------- sci-biology/conrad/metadata.xml | 15 ----------- 3 files changed, 69 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index 3c8ff3880..a5e397fa4 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -50,8 +50,6 @@ dev-java/jcommon dev-java/skinlf dev-java/jrosetta dev-java/freehep-graphicsio-emf -# and also mask this which hasn't seen an upstream release since 2007! -sci-biology/conrad # depends on dev-java/args4j which is being last-rited from ::gentoo sci-libs/jhdf5 # ancient java, can't update due to gradle/maven limitation diff --git a/sci-biology/conrad/conrad-1.ebuild b/sci-biology/conrad/conrad-1.ebuild deleted file mode 100644 index bca495174..000000000 --- a/sci-biology/conrad/conrad-1.ebuild +++ /dev/null @@ -1,52 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit java-pkg-2 java-ant-2 - -DESCRIPTION="Ab initio- and ad hoc evidence-based (RNA-Seq, BLAST) gene/ORF predictor" -HOMEPAGE="https://sourceforge.net/projects/conradcrf"; -SRC_URI="https://downloads.sourceforge.net/project/conradcrf/conradcrf/Version%201/conradSrc.zip -> ${P}.zip" - -LICENSE="LGPL-2.1" -SLOT="0" -KEYWORDS="~amd64" - -RDEPEND=" - >=virtual/jre-1.5:* - <virtual/jdk-1.9:* - dev-java/commons-logging - >=dev-java/commons-lang-2.1:* - dev-java/colt - dev-java/dom4j - " - # spring # see bug #97004 - # dev-java/LBFGS # LBFGS is a numericla library we use internally for the solver -DEPEND="${RDEPEND} - >=virtual/jdk-1.5:* - <virtual/jdk-1.9:* - dev-java/ant-core - >=dev-java/jfreechart-1.0.3 - >=dev-java/jcommon-1.0.6 - >=dev-java/commons-math-1.1 - " -BDEPEND="app-arch/unzip" -S="${WORKDIR}" - -src_prepare(){ - default - sed -e s'#lib/conrad.jar#/usr/share/conrad/lib/conrad.jar#' -i bin/conrad.sh || die -} - -src_compile(){ - cd dev || die - ant compile || die -} - -src_install() { - dobin bin/conrad.sh - java-pkg_dojar lib/conrad.jar - java-pkg_dolauncher conrad --jar conrad.jar - dodoc -r docs models samples trainingFiles -} diff --git a/sci-biology/conrad/metadata.xml b/sci-biology/conrad/metadata.xml deleted file mode 100644 index 814dcabcc..000000000 --- a/sci-biology/conrad/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>mmokr...@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>sci-biol...@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="sourceforge">conradcrf</remote-id> - </upstream> -</pkgmetadata>
