[gentoo-commits] proj/sci:master commit in: sci-biology/BamView/
commit: 4408e7272f8f39d72456fbbb1a847cc20cfb41b7
Author: Horea Christian chymera eu>
AuthorDate: Fri Dec 25 18:28:37 2020 +
Commit: Horea Christian gmail com>
CommitDate: Fri Dec 25 18:28:37 2020 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=4408e727
sci-biology/BamView: removed deprecated package
Now distributed as part of Artemis
https://github.com/sanger-pathogens/Artemis
Signed-off-by: Horea Christian chymera.eu>
sci-biology/BamView/BamView-1.2.11.ebuild | 22 --
sci-biology/BamView/metadata.xml | 14 --
2 files changed, 36 deletions(-)
diff --git a/sci-biology/BamView/BamView-1.2.11.ebuild
b/sci-biology/BamView/BamView-1.2.11.ebuild
deleted file mode 100644
index afc6ecb38..0
--- a/sci-biology/BamView/BamView-1.2.11.ebuild
+++ /dev/null
@@ -1,22 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit java-pkg-2 java-ant-2 eutils
-
-DESCRIPTION="Display read alignments in BAM files, is a part of Artemis"
-HOMEPAGE="http://bamview.sourceforge.net/";
-SRC_URI="http://bamview.sourceforge.net/v"${PV}"/BamView_v"${PV}".jar";
-
-#http://www.ncbi.nlm.nih.gov/pubmed/20071372
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="
- >=virtual/jdk-1.6:*
- dev-java/ant-core"
-RDEPEND="${DEPEND}
- >=virtual/jre-1.6:*"
diff --git a/sci-biology/BamView/metadata.xml b/sci-biology/BamView/metadata.xml
deleted file mode 100644
index 93e06748e..0
--- a/sci-biology/BamView/metadata.xml
+++ /dev/null
@@ -1,14 +0,0 @@
-
-http://www.gentoo.org/dtd/metadata.dtd";>
-
-
- mmokr...@fold.natur.cuni.cz
-
-
- sci-biol...@gentoo.org
- Gentoo Biology Project
-
-
- bamview
-
-
[gentoo-commits] proj/sci:master commit in: sci-biology/BamView/
commit: 6d14002f4e02d82e14710fe812b4d8576d9c40d5
Author: Christoph Junghans gentoo org>
AuthorDate: Tue Sep 16 00:11:49 2014 +
Commit: Christoph Junghans gentoo org>
CommitDate: Tue Sep 16 00:26:07 2014 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=6d14002f
added metadata.xml
Package-Manager: portage-2.2.8-r1
---
sci-biology/BamView/BamView-1.2.11.ebuild | 3 ++-
sci-biology/BamView/ChangeLog | 5 -
sci-biology/BamView/metadata.xml | 8
3 files changed, 14 insertions(+), 2 deletions(-)
diff --git a/sci-biology/BamView/BamView-1.2.11.ebuild
b/sci-biology/BamView/BamView-1.2.11.ebuild
index 265fd0e..df1a566 100644
--- a/sci-biology/BamView/BamView-1.2.11.ebuild
+++ b/sci-biology/BamView/BamView-1.2.11.ebuild
@@ -10,7 +10,8 @@ DESCRIPTION="Display read alignments in BAM files, is a part
of Artemis"
HOMEPAGE="http://bamview.sourceforge.net/";
SRC_URI="http://bamview.sourceforge.net/v"${PV}"/BamView_v"${PV}".jar";
-LICENSE=""
+#http://www.ncbi.nlm.nih.gov/pubmed/20071372
+LICENSE="GPL-2"
SLOT="0"
KEYWORDS=""
IUSE=""
diff --git a/sci-biology/BamView/ChangeLog b/sci-biology/BamView/ChangeLog
index f9eb8eb..09b7c5e 100644
--- a/sci-biology/BamView/ChangeLog
+++ b/sci-biology/BamView/ChangeLog
@@ -2,6 +2,10 @@
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 16 Sep 2014; Christoph Junghans +metadata.xml,
+ BamView-1.2.11.ebuild:
+ added metadata.xml
+
24 Mar 2014; Martin Mokrejs
BamView-1.2.11.ebuild:
dropped KEYWORDS
@@ -11,4 +15,3 @@
24 Mar 2014; Martin Mokrejs
+BamView-1.2.11.ebuild:
not sure if we need a separate package; is said to be part of Artemis bundle
-
diff --git a/sci-biology/BamView/metadata.xml b/sci-biology/BamView/metadata.xml
new file mode 100644
index 000..91ee05e
--- /dev/null
+++ b/sci-biology/BamView/metadata.xml
@@ -0,0 +1,8 @@
+
+http://www.gentoo.org/dtd/metadata.dtd";>
+
+sci-biology
+
+ mmokr...@fold.natur.cuni.cz
+
+
[gentoo-commits] proj/sci:master commit in: sci-biology/BamView/
commit: 7df8fcb405e9620d5b6ddbd976f41e9521276a28
Author: Martin Mokrejš fold natur cuni cz>
AuthorDate: Fri Jun 27 07:51:10 2014 +
Commit: Martin Mokrejs fold natur cuni cz>
CommitDate: Fri Jun 27 07:51:10 2014 +
URL:
http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=7df8fcb4
sci-biology/BamView: fixed java deps
---
sci-biology/BamView/BamView-1.2.11.ebuild | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/sci-biology/BamView/BamView-1.2.11.ebuild
b/sci-biology/BamView/BamView-1.2.11.ebuild
index 44475f4..265fd0e 100644
--- a/sci-biology/BamView/BamView-1.2.11.ebuild
+++ b/sci-biology/BamView/BamView-1.2.11.ebuild
@@ -15,6 +15,7 @@ SLOT="0"
KEYWORDS=""
IUSE=""
-DEPEND="virtual/jdk"
+DEPEND=">=virtual/jdk-1.6
+ dev-java/ant-core"
RDEPEND="${DEPEND}
- virtual/jre"
+ >=virtual/jre-1.6"
[gentoo-commits] proj/sci:master commit in: sci-biology/BamView/
commit: 67b76c95a180e3fe84048e9411e85feca4e99869
Author: Martin Mokrejš fold natur cuni cz>
AuthorDate: Mon Mar 24 10:33:39 2014 +
Commit: Martin Mokrejs fold natur cuni cz>
CommitDate: Mon Mar 24 10:33:39 2014 +
URL:
http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=67b76c95
sci-biology/BamView: dropped KEYWORDS
---
sci-biology/BamView/BamView-1.2.11.ebuild | 2 +-
sci-biology/BamView/ChangeLog | 4
2 files changed, 5 insertions(+), 1 deletion(-)
diff --git a/sci-biology/BamView/BamView-1.2.11.ebuild
b/sci-biology/BamView/BamView-1.2.11.ebuild
index af27b9a..44475f4 100644
--- a/sci-biology/BamView/BamView-1.2.11.ebuild
+++ b/sci-biology/BamView/BamView-1.2.11.ebuild
@@ -12,7 +12,7 @@
SRC_URI="http://bamview.sourceforge.net/v"${PV}"/BamView_v"${PV}".jar";
LICENSE=""
SLOT="0"
-KEYWORDS="~amd64"
+KEYWORDS=""
IUSE=""
DEPEND="virtual/jdk"
diff --git a/sci-biology/BamView/ChangeLog b/sci-biology/BamView/ChangeLog
index 30799c0..f9eb8eb 100644
--- a/sci-biology/BamView/ChangeLog
+++ b/sci-biology/BamView/ChangeLog
@@ -2,6 +2,10 @@
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 24 Mar 2014; Martin Mokrejs
+ BamView-1.2.11.ebuild:
+ dropped KEYWORDS
+
*BamView-1.2.11 (24 Mar 2014)
24 Mar 2014; Martin Mokrejs
[gentoo-commits] proj/sci:master commit in: sci-biology/BamView/
commit: f69d90373519a8806466e5b769d8aeb47cf33af6
Author: Martin Mokrejš fold natur cuni cz>
AuthorDate: Mon Mar 24 10:30:36 2014 +
Commit: Martin Mokrejs fold natur cuni cz>
CommitDate: Mon Mar 24 10:30:36 2014 +
URL:
http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f69d9037
sci-biology/BamView: not sure if we need a separate package; is said to be part
of Artemis bundle
---
sci-biology/BamView/BamView-1.2.11.ebuild | 20
sci-biology/BamView/ChangeLog | 10 ++
2 files changed, 30 insertions(+)
diff --git a/sci-biology/BamView/BamView-1.2.11.ebuild
b/sci-biology/BamView/BamView-1.2.11.ebuild
new file mode 100644
index 000..af27b9a
--- /dev/null
+++ b/sci-biology/BamView/BamView-1.2.11.ebuild
@@ -0,0 +1,20 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit java-pkg-2 java-ant-2 eutils
+
+DESCRIPTION="Display read alignments in BAM files, is a part of Artemis"
+HOMEPAGE="http://bamview.sourceforge.net/";
+SRC_URI="http://bamview.sourceforge.net/v"${PV}"/BamView_v"${PV}".jar";
+
+LICENSE=""
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND="virtual/jdk"
+RDEPEND="${DEPEND}
+ virtual/jre"
diff --git a/sci-biology/BamView/ChangeLog b/sci-biology/BamView/ChangeLog
new file mode 100644
index 000..30799c0
--- /dev/null
+++ b/sci-biology/BamView/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/BamView
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*BamView-1.2.11 (24 Mar 2014)
+
+ 24 Mar 2014; Martin Mokrejs
+ +BamView-1.2.11.ebuild:
+ not sure if we need a separate package; is said to be part of Artemis bundle
+
