[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: 11e20960ab3fda75eddcb5d7efca8c7708098d31 Author: Horea Christian chymera eu> AuthorDate: Wed Feb 21 01:17:24 2024 + Commit: Horea Christian gmail com> CommitDate: Wed Feb 21 01:17:24 2024 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=11e20960 sci-libs/nipy: version bump, removed deprecated version Signed-off-by: Horea Christian chymera.eu> sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild | 52 - sci-libs/nipy/nipy-0.6.0.ebuild | 37 2 files changed, 37 insertions(+), 52 deletions(-) diff --git a/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild b/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild deleted file mode 100644 index 25bdee0b8..0 --- a/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild +++ /dev/null @@ -1,52 +0,0 @@ -# Copyright 1999-2023 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{10..11} ) - -inherit distutils-r1 - -MY_HASH="35a5f5205ba2aa54f1f0524564a6f1f8dafb237f" - -DESCRIPTION="Neuroimaging tools for Python" -HOMEPAGE="https://nipy.org/"; -SRC_URI="https://github.com/${PN}/${PN}/archive/${MY_HASH}.tar.gz -> ${P}.gh.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND=" - dev-python/scipy[${PYTHON_USEDEP}] - dev-python/sympy[${PYTHON_USEDEP}] - sci-libs/nibabel[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - " -DEPEND="" - -S="${WORKDIR}/${PN}-${MY_HASH}" - -python_prepare_all() { - distutils-r1_python_prepare_all - # bug #397605 - [[ ${CHOST} == *-darwin* ]] \ - && append-ldflags -bundle "-undefined dynamic_lookup" \ - || append-ldflags -shared - - # nipy uses the horrible numpy.distutils automagic -} - -#python_test() { -# distutils-r1_install_for_testing -# cp nipy/testing/*.nii.gz "${BUILD_DIR}/lib/nipy/testing/" -# cp nipy/modalities/fmri/tests/*.{mat,npz,txt} "${BUILD_DIR}/lib/nipy/modalities/fmri/tests/" -# cp nipy/algorithms/statistics/models/tests/test_data.bin "${BUILD_DIR}/lib/nipy/algorithms/statistics/models/tests" -# cp nipy/labs/spatial_models/tests/some_blobs.nii "${BUILD_DIR}/lib/nipy/labs/spatial_models/tests/some_blobs.nii" -# mkdir "${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/" -# cp nipy/algorithms/diagnostics/tests/data/tsdiff_results.mat "${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/" -# cd "${BUILD_DIR}" || die -# echo "backend : agg" > matplotlibrc -# nosetests || die -#} diff --git a/sci-libs/nipy/nipy-0.6.0.ebuild b/sci-libs/nipy/nipy-0.6.0.ebuild new file mode 100644 index 0..8f8ea83e8 --- /dev/null +++ b/sci-libs/nipy/nipy-0.6.0.ebuild @@ -0,0 +1,37 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DISTUTILS_USE_PEP517=meson-python +PYTHON_COMPAT=( python3_{10..11} ) +DISTUTILS_EXT=1 + +inherit distutils-r1 + +DESCRIPTION="Neuroimaging tools for Python" +HOMEPAGE="https://nipy.org/"; +SRC_URI="https://github.com/nipy/nipy/archive/refs/tags/${PV}.tar.gz -> ${P}.gh.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" +# Test data unavailable: +# https://github.com/nipy/nipy/issues/561#event-11866547632 +RESTRICT="test" + +RDEPEND=" + dev-python/scipy[${PYTHON_USEDEP}] + dev-python/sympy[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + " +DEPEND="" + +distutils_enable_tests pytest + +python_test() { + rm -rf nipy || die + epytest +}
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: 25abe29c72046b3cf1d3b4a1dc617c3bd90c05ac Author: Horea Christian chymera eu> AuthorDate: Tue May 2 23:53:24 2023 + Commit: Horea Christian gmail com> CommitDate: Tue May 2 23:53:24 2023 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=25abe29c sci-libs/nipy: enable py3.11 Signed-off-by: Horea Christian chymera.eu> sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild b/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild index 58deeab11..25bdee0b8 100644 --- a/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild +++ b/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild @@ -3,7 +3,7 @@ EAPI=8 -PYTHON_COMPAT=( python3_10 ) +PYTHON_COMPAT=( python3_{10..11} ) inherit distutils-r1
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: 0c941833ff2ac8b3e3104f5a764aed88cf7b Author: Andrew Ammerlaan gentoo org> AuthorDate: Tue May 2 12:54:51 2023 + Commit: Andrew Ammerlaan gentoo org> CommitDate: Tue May 2 12:54:51 2023 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=0c941833 sci-libs/nipy: drop 0.4.2, 0.5.0-r1 Signed-off-by: Andrew Ammerlaan gentoo.org> sci-libs/nipy/nipy-0.4.2.ebuild| 55 -- sci-libs/nipy/nipy-0.5.0-r1.ebuild | 49 - 2 files changed, 104 deletions(-) diff --git a/sci-libs/nipy/nipy-0.4.2.ebuild b/sci-libs/nipy/nipy-0.4.2.ebuild deleted file mode 100644 index be8bd42a5..0 --- a/sci-libs/nipy/nipy-0.4.2.ebuild +++ /dev/null @@ -1,55 +0,0 @@ -# Copyright 1999-2022 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_10 ) - -inherit distutils-r1 - -DESCRIPTION="Neuroimaging tools for Python" -HOMEPAGE="https://nipy.org/"; -SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.gh.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" -RESTRICT="test" -# reported upstream: https://github.com/nipy/nipy/issues/493 - -RDEPEND=" - dev-python/prov[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - dev-python/sympy[${PYTHON_USEDEP}] - >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - " - -DEPEND=" - ${RDEPEND} - dev-python/setuptools[${PYTHON_USEDEP}] - " - -python_prepare_all() { - distutils-r1_python_prepare_all - # bug #397605 - [[ ${CHOST} == *-darwin* ]] \ - && append-ldflags -bundle "-undefined dynamic_lookup" \ - || append-ldflags -shared - - # nipy uses the horrible numpy.distutils automagic -} - -python_test() { - distutils-r1_install_for_testing - cp nipy/testing/*.nii.gz "${BUILD_DIR}/lib/nipy/testing/" - cp nipy/modalities/fmri/tests/*.{mat,npz,txt} "${BUILD_DIR}/lib/nipy/modalities/fmri/tests/" - cp nipy/algorithms/statistics/models/tests/test_data.bin "${BUILD_DIR}/lib/nipy/algorithms/statistics/models/tests" - cp nipy/labs/spatial_models/tests/some_blobs.nii "${BUILD_DIR}/lib/nipy/labs/spatial_models/tests/some_blobs.nii" - mkdir "${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/" - cp nipy/algorithms/diagnostics/tests/data/tsdiff_results.mat "${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/" - cd "${BUILD_DIR}" || die - echo "backend : agg" > matplotlibrc - nosetests || die -} diff --git a/sci-libs/nipy/nipy-0.5.0-r1.ebuild b/sci-libs/nipy/nipy-0.5.0-r1.ebuild deleted file mode 100644 index 86fb52841..0 --- a/sci-libs/nipy/nipy-0.5.0-r1.ebuild +++ /dev/null @@ -1,49 +0,0 @@ -# Copyright 1999-2022 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_10 ) - -inherit distutils-r1 - -DESCRIPTION="Neuroimaging tools for Python" -HOMEPAGE="https://nipy.org/"; -SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.gh.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" -# No tests, reported upstream: https://github.com/nipy/nipy/issues/493 - -RDEPEND=" - dev-python/scipy[${PYTHON_USEDEP}] - dev-python/sympy[${PYTHON_USEDEP}] - sci-libs/nibabel[${PYTHON_USEDEP}] -matplotlibrc -# nosetests || die -#}
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: 8f54232590230c92ea318e914888a3e2752bbef1 Author: Horea Christian chymera eu> AuthorDate: Mon Jan 30 10:41:22 2023 + Commit: Horea Christian gmail com> CommitDate: Mon Jan 30 10:41:22 2023 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=8f542325 sci-libs/nipy: using gh source file suffix Signed-off-by: Horea Christian chymera.eu> sci-libs/nipy/nipy-0.4.2.ebuild | 2 +- sci-libs/nipy/nipy-0.5.0-r1.ebuild | 2 +- sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/sci-libs/nipy/nipy-0.4.2.ebuild b/sci-libs/nipy/nipy-0.4.2.ebuild index 6d97b7b09..be8bd42a5 100644 --- a/sci-libs/nipy/nipy-0.4.2.ebuild +++ b/sci-libs/nipy/nipy-0.4.2.ebuild @@ -9,7 +9,7 @@ inherit distutils-r1 DESCRIPTION="Neuroimaging tools for Python" HOMEPAGE="https://nipy.org/"; -SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz" +SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.gh.tar.gz" LICENSE="BSD" SLOT="0" diff --git a/sci-libs/nipy/nipy-0.5.0-r1.ebuild b/sci-libs/nipy/nipy-0.5.0-r1.ebuild index 227364ec4..86fb52841 100644 --- a/sci-libs/nipy/nipy-0.5.0-r1.ebuild +++ b/sci-libs/nipy/nipy-0.5.0-r1.ebuild @@ -9,7 +9,7 @@ inherit distutils-r1 DESCRIPTION="Neuroimaging tools for Python" HOMEPAGE="https://nipy.org/"; -SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz" +SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.gh.tar.gz" LICENSE="BSD" SLOT="0" diff --git a/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild b/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild index 22c5bbde0..58deeab11 100644 --- a/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild +++ b/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild @@ -11,7 +11,7 @@ MY_HASH="35a5f5205ba2aa54f1f0524564a6f1f8dafb237f" DESCRIPTION="Neuroimaging tools for Python" HOMEPAGE="https://nipy.org/"; -SRC_URI="https://github.com/${PN}/${PN}/archive/${MY_HASH}.tar.gz -> ${P}.tar.gz" +SRC_URI="https://github.com/${PN}/${PN}/archive/${MY_HASH}.tar.gz -> ${P}.gh.tar.gz" LICENSE="BSD" SLOT="0"
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: 0e1f46a60149e2805e3c5287484a0e94487df0fd Author: Horea Christian chymera eu> AuthorDate: Mon Jan 30 10:35:02 2023 + Commit: Horea Christian gmail com> CommitDate: Mon Jan 30 10:35:02 2023 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=0e1f46a6 sci-libs/nipy: add 0.5.1_pre20230103 Signed-off-by: Horea Christian chymera.eu> sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild | 52 + 1 file changed, 52 insertions(+) diff --git a/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild b/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild new file mode 100644 index 0..22c5bbde0 --- /dev/null +++ b/sci-libs/nipy/nipy-0.5.1_pre20230103.ebuild @@ -0,0 +1,52 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +PYTHON_COMPAT=( python3_10 ) + +inherit distutils-r1 + +MY_HASH="35a5f5205ba2aa54f1f0524564a6f1f8dafb237f" + +DESCRIPTION="Neuroimaging tools for Python" +HOMEPAGE="https://nipy.org/"; +SRC_URI="https://github.com/${PN}/${PN}/archive/${MY_HASH}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +RDEPEND=" + dev-python/scipy[${PYTHON_USEDEP}] + dev-python/sympy[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + " +DEPEND="" + +S="${WORKDIR}/${PN}-${MY_HASH}" + +python_prepare_all() { + distutils-r1_python_prepare_all + # bug #397605 + [[ ${CHOST} == *-darwin* ]] \ + && append-ldflags -bundle "-undefined dynamic_lookup" \ + || append-ldflags -shared + + # nipy uses the horrible numpy.distutils automagic +} + +#python_test() { +# distutils-r1_install_for_testing +# cp nipy/testing/*.nii.gz "${BUILD_DIR}/lib/nipy/testing/" +# cp nipy/modalities/fmri/tests/*.{mat,npz,txt} "${BUILD_DIR}/lib/nipy/modalities/fmri/tests/" +# cp nipy/algorithms/statistics/models/tests/test_data.bin "${BUILD_DIR}/lib/nipy/algorithms/statistics/models/tests" +# cp nipy/labs/spatial_models/tests/some_blobs.nii "${BUILD_DIR}/lib/nipy/labs/spatial_models/tests/some_blobs.nii" +# mkdir "${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/" +# cp nipy/algorithms/diagnostics/tests/data/tsdiff_results.mat "${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/" +# cd "${BUILD_DIR}" || die +# echo "backend : agg" > matplotlibrc +# nosetests || die +#}
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: 88b7a3cbbffc0acea5d38d78f799178f17dd47f9 Author: Horea Christian chymera eu> AuthorDate: Thu Jan 26 21:15:36 2023 + Commit: Horea Christian gmail com> CommitDate: Thu Jan 26 21:15:36 2023 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=88b7a3cb sci-libs/nipy: revbump for numpy compatibility Signed-off-by: Horea Christian chymera.eu> sci-libs/nipy/{nipy-0.5.0.ebuild => nipy-0.5.0-r1.ebuild} | 9 +++-- 1 file changed, 3 insertions(+), 6 deletions(-) diff --git a/sci-libs/nipy/nipy-0.5.0.ebuild b/sci-libs/nipy/nipy-0.5.0-r1.ebuild similarity index 88% rename from sci-libs/nipy/nipy-0.5.0.ebuild rename to sci-libs/nipy/nipy-0.5.0-r1.ebuild index 2dbabadfd..227364ec4 100644 --- a/sci-libs/nipy/nipy-0.5.0.ebuild +++ b/sci-libs/nipy/nipy-0.5.0-r1.ebuild @@ -15,19 +15,16 @@ LICENSE="BSD" SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="" -RESTRICT="test" -# reported upstream: https://github.com/nipy/nipy/issues/493 +# No tests, reported upstream: https://github.com/nipy/nipy/issues/493 RDEPEND=" dev-python/scipy[${PYTHON_USEDEP}] dev-python/sympy[${PYTHON_USEDEP}] - >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] +
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: aba880d830583497220a3829a0d2250bdf168aa9 Author: Horea Christian chymera eu> AuthorDate: Mon Jul 11 14:39:23 2022 + Commit: Horea Christian gmail com> CommitDate: Mon Jul 11 14:39:23 2022 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=aba880d8 sci-libs/nipy: removed stale live ebuild Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian chymera.eu> sci-libs/nipy/nipy-.ebuild | 54 -- 1 file changed, 54 deletions(-) diff --git a/sci-libs/nipy/nipy-.ebuild b/sci-libs/nipy/nipy-.ebuild deleted file mode 100644 index 7acc9a234..0 --- a/sci-libs/nipy/nipy-.ebuild +++ /dev/null @@ -1,54 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{7..9} ) - -inherit distutils-r1 flag-o-matic git-r3 - -DESCRIPTION="Neuroimaging tools for Python" -HOMEPAGE="https://nipy.org/"; -SRC_URI="" -EGIT_REPO_URI="https://github.com/nipy/nipy"; - -LICENSE="BSD" -SLOT="0" -KEYWORDS="" -IUSE="" - -RDEPEND=" - dev-python/prov[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - dev-python/sympy[${PYTHON_USEDEP}] - >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - " - -DEPEND=" - ${RDEPEND} - dev-python/setuptools[${PYTHON_USEDEP}] - " - -python_prepare_all() { - distutils-r1_python_prepare_all - # bug #397605 - [[ ${CHOST} == *-darwin* ]] \ - && append-ldflags -bundle "-undefined dynamic_lookup" \ - || append-ldflags -shared - - # nipy uses the horrible numpy.distutils automagic -} - -python_test() { - distutils-r1_install_for_testing - cp nipy/testing/*.nii.gz "${BUILD_DIR}/lib/nipy/testing/" - cp nipy/modalities/fmri/tests/*.{mat,npz,txt} "${BUILD_DIR}/lib/nipy/modalities/fmri/tests/" - cp nipy/algorithms/statistics/models/tests/test_data.bin "${BUILD_DIR}/lib/nipy/algorithms/statistics/models/tests" - cp nipy/labs/spatial_models/tests/some_blobs.nii "${BUILD_DIR}/lib/nipy/labs/spatial_models/tests/some_blobs.nii" - mkdir "${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/" - cp nipy/algorithms/diagnostics/tests/data/tsdiff_results.mat "${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/" - cd "${BUILD_DIR}" || die - echo "backend : agg" > matplotlibrc - nosetests || die -}
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: ac5a5ff03452db2dbcaff780a74fde8e5731d7de Author: Horea Christian chymera eu> AuthorDate: Mon Jul 11 14:39:00 2022 + Commit: Horea Christian gmail com> CommitDate: Mon Jul 11 14:39:00 2022 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=ac5a5ff0 sci-libs/nipy: EAPI/PYTHON_COMPAT bump and restricted tests Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian chymera.eu> sci-libs/nipy/nipy-0.4.2.ebuild | 10 sci-libs/nipy/nipy-0.5.0.ebuild | 52 + 2 files changed, 58 insertions(+), 4 deletions(-) diff --git a/sci-libs/nipy/nipy-0.4.2.ebuild b/sci-libs/nipy/nipy-0.4.2.ebuild index c20d904f5..3b483638f 100644 --- a/sci-libs/nipy/nipy-0.4.2.ebuild +++ b/sci-libs/nipy/nipy-0.4.2.ebuild @@ -1,11 +1,11 @@ -# Copyright 1999-2021 Gentoo Authors +# Copyright 1999-2022 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=7 +EAPI=8 -PYTHON_COMPAT=( python3_{7..9} ) +PYTHON_COMPAT=( python3_{8..10} ) -inherit distutils-r1 flag-o-matic +inherit distutils-r1 DESCRIPTION="Neuroimaging tools for Python" HOMEPAGE="https://nipy.org/"; @@ -15,6 +15,8 @@ LICENSE="BSD" SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="" +RESTRICT="test" +# reported upstream: https://github.com/nipy/nipy/issues/493 RDEPEND=" dev-python/prov[${PYTHON_USEDEP}] diff --git a/sci-libs/nipy/nipy-0.5.0.ebuild b/sci-libs/nipy/nipy-0.5.0.ebuild new file mode 100644 index 0..81a462c96 --- /dev/null +++ b/sci-libs/nipy/nipy-0.5.0.ebuild @@ -0,0 +1,52 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +PYTHON_COMPAT=( python3_{8..10} ) + +inherit distutils-r1 + +DESCRIPTION="Neuroimaging tools for Python" +HOMEPAGE="https://nipy.org/"; +SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" +RESTRICT="test" +# reported upstream: https://github.com/nipy/nipy/issues/493 + +RDEPEND=" + dev-python/scipy[${PYTHON_USEDEP}] + dev-python/sympy[${PYTHON_USEDEP}] + >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + " +DEPEND="" + +distutils_enable_tests nose + +python_prepare_all() { + distutils-r1_python_prepare_all + # bug #397605 + [[ ${CHOST} == *-darwin* ]] \ + && append-ldflags -bundle "-undefined dynamic_lookup" \ + || append-ldflags -shared + + # nipy uses the horrible numpy.distutils automagic +} + +#python_test() { +# distutils-r1_install_for_testing +# cp nipy/testing/*.nii.gz "${BUILD_DIR}/lib/nipy/testing/" +# cp nipy/modalities/fmri/tests/*.{mat,npz,txt} "${BUILD_DIR}/lib/nipy/modalities/fmri/tests/" +# cp nipy/algorithms/statistics/models/tests/test_data.bin "${BUILD_DIR}/lib/nipy/algorithms/statistics/models/tests" +# cp nipy/labs/spatial_models/tests/some_blobs.nii "${BUILD_DIR}/lib/nipy/labs/spatial_models/tests/some_blobs.nii" +# mkdir "${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/" +# cp nipy/algorithms/diagnostics/tests/data/tsdiff_results.mat "${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/" +# cd "${BUILD_DIR}" || die +# echo "backend : agg" > matplotlibrc +# nosetests || die +#}
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: b27d4d4cd2e65c13c8e56df91db884465cc4aae4 Author: Andrew Ammerlaan gentoo org> AuthorDate: Thu Dec 16 10:47:51 2021 + Commit: Andrew Ammerlaan gentoo org> CommitDate: Thu Dec 16 10:47:51 2021 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=b27d4d4c sci-libs/nipy: drop UnusedInherits Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan gentoo.org> sci-libs/nipy/nipy-0.4.2.ebuild | 2 +- sci-libs/nipy/nipy-.ebuild | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/sci-libs/nipy/nipy-0.4.2.ebuild b/sci-libs/nipy/nipy-0.4.2.ebuild index 3749f7ae2..c20d904f5 100644 --- a/sci-libs/nipy/nipy-0.4.2.ebuild +++ b/sci-libs/nipy/nipy-0.4.2.ebuild @@ -5,7 +5,7 @@ EAPI=7 PYTHON_COMPAT=( python3_{7..9} ) -inherit distutils-r1 eutils multilib flag-o-matic +inherit distutils-r1 flag-o-matic DESCRIPTION="Neuroimaging tools for Python" HOMEPAGE="https://nipy.org/"; diff --git a/sci-libs/nipy/nipy-.ebuild b/sci-libs/nipy/nipy-.ebuild index 7e0f61d2d..7acc9a234 100644 --- a/sci-libs/nipy/nipy-.ebuild +++ b/sci-libs/nipy/nipy-.ebuild @@ -5,7 +5,7 @@ EAPI=7 PYTHON_COMPAT=( python3_{7..9} ) -inherit distutils-r1 eutils multilib flag-o-matic git-r3 +inherit distutils-r1 flag-o-matic git-r3 DESCRIPTION="Neuroimaging tools for Python" HOMEPAGE="https://nipy.org/";
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: d18bd689c3c0e6f52af0c0125ea1f15050902eb0 Author: Andrew Ammerlaan gentoo org> AuthorDate: Tue Jun 1 08:37:52 2021 + Commit: Andrew Ammerlaan gentoo org> CommitDate: Tue Jun 1 08:38:17 2021 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=d18bd689 sci-libs/nipy: bump PYTHON_COMPAT in to match latest release Bug: https://bugs.gentoo.org/793617 Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan gentoo.org> sci-libs/nipy/nipy-.ebuild | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sci-libs/nipy/nipy-.ebuild b/sci-libs/nipy/nipy-.ebuild index 9878397aa..7e0f61d2d 100644 --- a/sci-libs/nipy/nipy-.ebuild +++ b/sci-libs/nipy/nipy-.ebuild @@ -3,7 +3,7 @@ EAPI=7 -PYTHON_COMPAT=( python3_7 ) +PYTHON_COMPAT=( python3_{7..9} ) inherit distutils-r1 eutils multilib flag-o-matic git-r3
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: 36307c7234a79c480914318f22c5a6b5eb2abcba Author: Andrew Ammerlaan riseup net> AuthorDate: Sat Jan 30 15:20:25 2021 + Commit: Andrew Ammerlaan riseup net> CommitDate: Sat Jan 30 15:20:25 2021 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=36307c72 sci-libs/nipy: remove redundant long description Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan riseup.net> sci-libs/nipy/metadata.xml | 3 --- 1 file changed, 3 deletions(-) diff --git a/sci-libs/nipy/metadata.xml b/sci-libs/nipy/metadata.xml index 6ba3b6389..327dd23d3 100644 --- a/sci-libs/nipy/metadata.xml +++ b/sci-libs/nipy/metadata.xml @@ -9,9 +9,6 @@ s...@gentoo.org Gentoo Science Project - -NIPY is a python project for analysis of structural and functional neuroimaging data. - nipy
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: e53c0b5cdc93a368633f13842bf4559b61a9e77f Author: Andrew Ammerlaan riseup net> AuthorDate: Wed Jan 20 09:39:47 2021 + Commit: Andrew Ammerlaan riseup net> CommitDate: Wed Jan 20 09:39:47 2021 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=e53c0b5c sci-libs/nipy: drop old: failed REQUIRED_USE: py_targets_py3_7 Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan riseup.net> sci-libs/nipy/nipy-0.4.1.ebuild | 40 1 file changed, 40 deletions(-) diff --git a/sci-libs/nipy/nipy-0.4.1.ebuild b/sci-libs/nipy/nipy-0.4.1.ebuild deleted file mode 100644 index 81f6aa14a..0 --- a/sci-libs/nipy/nipy-0.4.1.ebuild +++ /dev/null @@ -1,40 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_7 ) - -inherit distutils-r1 eutils multilib flag-o-matic - -DESCRIPTION="Neuroimaging tools for Python" -HOMEPAGE="https://nipy.org/"; -SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND=" - dev-python/prov[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - dev-python/sympy[${PYTHON_USEDEP}] - >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - " - -DEPEND=" - ${RDEPEND} - dev-python/setuptools[${PYTHON_USEDEP}] - " - -python_prepare_all() { - distutils-r1_python_prepare_all - # bug #397605 - [[ ${CHOST} == *-darwin* ]] \ - && append-ldflags -bundle "-undefined dynamic_lookup" \ - || append-ldflags -shared - - # nipy uses the horrible numpy.distutils automagic -}
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: 05b74f55153f269bc317ff73437b75afbf47ffd8 Author: Andrew Ammerlaan riseup net> AuthorDate: Wed Jan 13 21:03:04 2021 + Commit: Andrew Ammerlaan riseup net> CommitDate: Wed Jan 13 21:03:04 2021 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=05b74f55 sci-libs/nipy: use https for homepage Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan riseup.net> sci-libs/nipy/nipy-0.4.1.ebuild | 4 ++-- sci-libs/nipy/nipy-0.4.2.ebuild | 4 ++-- sci-libs/nipy/nipy-.ebuild | 4 ++-- 3 files changed, 6 insertions(+), 6 deletions(-) diff --git a/sci-libs/nipy/nipy-0.4.1.ebuild b/sci-libs/nipy/nipy-0.4.1.ebuild index 81c038413..81f6aa14a 100644 --- a/sci-libs/nipy/nipy-0.4.1.ebuild +++ b/sci-libs/nipy/nipy-0.4.1.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2020 Gentoo Authors +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 @@ -8,7 +8,7 @@ PYTHON_COMPAT=( python3_7 ) inherit distutils-r1 eutils multilib flag-o-matic DESCRIPTION="Neuroimaging tools for Python" -HOMEPAGE="http://nipy.org/"; +HOMEPAGE="https://nipy.org/"; SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz" LICENSE="BSD" diff --git a/sci-libs/nipy/nipy-0.4.2.ebuild b/sci-libs/nipy/nipy-0.4.2.ebuild index dfc536d4c..3749f7ae2 100644 --- a/sci-libs/nipy/nipy-0.4.2.ebuild +++ b/sci-libs/nipy/nipy-0.4.2.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2020 Gentoo Authors +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 @@ -8,7 +8,7 @@ PYTHON_COMPAT=( python3_{7..9} ) inherit distutils-r1 eutils multilib flag-o-matic DESCRIPTION="Neuroimaging tools for Python" -HOMEPAGE="http://nipy.org/"; +HOMEPAGE="https://nipy.org/"; SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz" LICENSE="BSD" diff --git a/sci-libs/nipy/nipy-.ebuild b/sci-libs/nipy/nipy-.ebuild index 5eac0416a..9878397aa 100644 --- a/sci-libs/nipy/nipy-.ebuild +++ b/sci-libs/nipy/nipy-.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2020 Gentoo Authors +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 @@ -8,7 +8,7 @@ PYTHON_COMPAT=( python3_7 ) inherit distutils-r1 eutils multilib flag-o-matic git-r3 DESCRIPTION="Neuroimaging tools for Python" -HOMEPAGE="http://nipy.org/"; +HOMEPAGE="https://nipy.org/"; SRC_URI="" EGIT_REPO_URI="https://github.com/nipy/nipy";
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: 3067a289729c8feeb35a162ce6974d4182394242 Author: Horea Christian chymera eu> AuthorDate: Wed Dec 23 08:04:40 2020 + Commit: Horea Christian gmail com> CommitDate: Wed Dec 23 08:04:40 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=3067a289 sci-libs/nipy: updated PYTHON_COMPAT Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Horea Christian chymera.eu> sci-libs/nipy/nipy-0.4.2.ebuild | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sci-libs/nipy/nipy-0.4.2.ebuild b/sci-libs/nipy/nipy-0.4.2.ebuild index 69663fc86..dfc536d4c 100644 --- a/sci-libs/nipy/nipy-0.4.2.ebuild +++ b/sci-libs/nipy/nipy-0.4.2.ebuild @@ -3,7 +3,7 @@ EAPI=7 -PYTHON_COMPAT=( python3_7 ) +PYTHON_COMPAT=( python3_{7..9} ) inherit distutils-r1 eutils multilib flag-o-matic
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: 8867a035bf176626d5ba3c445e1bc1624ea7913f Author: Horea Christian chymera eu> AuthorDate: Sun Sep 27 04:21:37 2020 + Commit: Horea Christian gmail com> CommitDate: Sun Sep 27 04:21:37 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=8867a035 sci-libs/nipy: removed KEYWORDS to match dev-python/prov Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian chymera.eu> sci-libs/nipy/nipy-0.4.1.ebuild | 2 +- sci-libs/nipy/nipy-0.4.2.ebuild | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/sci-libs/nipy/nipy-0.4.1.ebuild b/sci-libs/nipy/nipy-0.4.1.ebuild index ea3c05d80..81c038413 100644 --- a/sci-libs/nipy/nipy-0.4.1.ebuild +++ b/sci-libs/nipy/nipy-0.4.1.ebuild @@ -13,7 +13,7 @@ SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz" LICENSE="BSD" SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +KEYWORDS="~amd64 ~x86" IUSE="" RDEPEND=" diff --git a/sci-libs/nipy/nipy-0.4.2.ebuild b/sci-libs/nipy/nipy-0.4.2.ebuild index 2793dc057..69663fc86 100644 --- a/sci-libs/nipy/nipy-0.4.2.ebuild +++ b/sci-libs/nipy/nipy-0.4.2.ebuild @@ -13,7 +13,7 @@ SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz" LICENSE="BSD" SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +KEYWORDS="~amd64 ~x86" IUSE="" RDEPEND="
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: be7bc5dffb18eb95db07ce1c6d49c5ceab398096 Author: Horea Christian chymera eu> AuthorDate: Sat Sep 26 11:38:19 2020 + Commit: Horea Christian gmail com> CommitDate: Sat Sep 26 11:38:19 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=be7bc5df sci-libs/nipy: PYTHON_COMPAT and live ebuild update Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian chymera.eu> sci-libs/nipy/nipy-0.4.1.ebuild | 2 +- sci-libs/nipy/nipy-0.4.2.ebuild | 2 +- sci-libs/nipy/nipy-.ebuild | 33 + 3 files changed, 27 insertions(+), 10 deletions(-) diff --git a/sci-libs/nipy/nipy-0.4.1.ebuild b/sci-libs/nipy/nipy-0.4.1.ebuild index 93f16c86b..ea3c05d80 100644 --- a/sci-libs/nipy/nipy-0.4.1.ebuild +++ b/sci-libs/nipy/nipy-0.4.1.ebuild @@ -3,7 +3,7 @@ EAPI=7 -PYTHON_COMPAT=( python3_6 ) +PYTHON_COMPAT=( python3_7 ) inherit distutils-r1 eutils multilib flag-o-matic diff --git a/sci-libs/nipy/nipy-0.4.2.ebuild b/sci-libs/nipy/nipy-0.4.2.ebuild index b2151fb91..2793dc057 100644 --- a/sci-libs/nipy/nipy-0.4.2.ebuild +++ b/sci-libs/nipy/nipy-0.4.2.ebuild @@ -3,7 +3,7 @@ EAPI=7 -PYTHON_COMPAT=( python3_{6,7} ) +PYTHON_COMPAT=( python3_7 ) inherit distutils-r1 eutils multilib flag-o-matic diff --git a/sci-libs/nipy/nipy-.ebuild b/sci-libs/nipy/nipy-.ebuild index 0fb447c4f..5eac0416a 100644 --- a/sci-libs/nipy/nipy-.ebuild +++ b/sci-libs/nipy/nipy-.ebuild @@ -3,9 +3,9 @@ EAPI=7 -PYTHON_COMPAT=( python3_6 ) +PYTHON_COMPAT=( python3_7 ) -inherit distutils-r1 multilib git-r3 flag-o-matic +inherit distutils-r1 eutils multilib flag-o-matic git-r3 DESCRIPTION="Neuroimaging tools for Python" HOMEPAGE="http://nipy.org/"; @@ -14,17 +14,21 @@ EGIT_REPO_URI="https://github.com/nipy/nipy"; LICENSE="BSD" SLOT="0" -IUSE="" KEYWORDS="" +IUSE="" -DEPEND=" +RDEPEND=" dev-python/prov[${PYTHON_USEDEP}] - dev-python/setuptools[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}]" -RDEPEND="${DEPEND} dev-python/scipy[${PYTHON_USEDEP}] dev-python/sympy[${PYTHON_USEDEP}] - >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]" + >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + " + +DEPEND=" + ${RDEPEND} + dev-python/setuptools[${PYTHON_USEDEP}] + " python_prepare_all() { distutils-r1_python_prepare_all @@ -35,3 +39,16 @@ python_prepare_all() { # nipy uses the horrible numpy.distutils automagic } + +python_test() { + distutils-r1_install_for_testing + cp nipy/testing/*.nii.gz "${BUILD_DIR}/lib/nipy/testing/" + cp nipy/modalities/fmri/tests/*.{mat,npz,txt} "${BUILD_DIR}/lib/nipy/modalities/fmri/tests/" + cp nipy/algorithms/statistics/models/tests/test_data.bin "${BUILD_DIR}/lib/nipy/algorithms/statistics/models/tests" + cp nipy/labs/spatial_models/tests/some_blobs.nii "${BUILD_DIR}/lib/nipy/labs/spatial_models/tests/some_blobs.nii" + mkdir "${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/" + cp nipy/algorithms/diagnostics/tests/data/tsdiff_results.mat "${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/" + cd "${BUILD_DIR}" || die + echo "backend : agg" > matplotlibrc + nosetests || die +}
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: 65c3bccb4543dd68ac78a3805371228dd4e7dd8a Author: Horea Christian chymera eu> AuthorDate: Sun Mar 29 02:55:22 2020 + Commit: Horea Christian gmail com> CommitDate: Sun Mar 29 02:55:22 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=65c3bccb sci-libs/nipy: PYTHON_COMPAT 3_7 Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Horea Christian chymera.eu> sci-libs/nipy/nipy-0.4.2.ebuild | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sci-libs/nipy/nipy-0.4.2.ebuild b/sci-libs/nipy/nipy-0.4.2.ebuild index 7afdf0053..91b6a3d9b 100644 --- a/sci-libs/nipy/nipy-0.4.2.ebuild +++ b/sci-libs/nipy/nipy-0.4.2.ebuild @@ -3,7 +3,7 @@ EAPI=7 -PYTHON_COMPAT=( python3_6 ) +PYTHON_COMPAT=( python3_{6,7} ) inherit distutils-r1 eutils multilib flag-o-matic
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy-templates/
commit: 3e15fbd3c424ccd86c0001de906ce29c0f29ead0 Author: Horea Christian chymera eu> AuthorDate: Tue Mar 24 23:00:27 2020 + Commit: Horea Christian gmail com> CommitDate: Tue Mar 24 23:00:27 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=3e15fbd3 sci-libs/nipy-templates: remove from tree. Unmaintained, not used by any packages Signed-off-by: Horea Christian chymera.eu> sci-libs/nipy-templates/metadata.xml | 15 --- sci-libs/nipy-templates/nipy-templates-0.2.ebuild | 20 2 files changed, 35 deletions(-) diff --git a/sci-libs/nipy-templates/metadata.xml b/sci-libs/nipy-templates/metadata.xml deleted file mode 100644 index 1b34497a7..0 --- a/sci-libs/nipy-templates/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ - -http://www.gentoo.org/dtd/metadata.dtd";> - - - horea.chr...@gmail.com - Horea Christian - - - s...@gentoo.org - Gentoo Science Project - - -Nipy-templates is a package containing template files needed by some nipy functions. - - diff --git a/sci-libs/nipy-templates/nipy-templates-0.2.ebuild b/sci-libs/nipy-templates/nipy-templates-0.2.ebuild deleted file mode 100644 index 0cde31df8..0 --- a/sci-libs/nipy-templates/nipy-templates-0.2.ebuild +++ /dev/null @@ -1,20 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 - -DESCRIPTION="Normalization templates for Python Neuroimaging" -HOMEPAGE="http://nipy.org/"; -SRC_URI="http://nipy.org/data-packages/${P}.tar.gz"; - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="" - -RDEPEND="" -DEPEND=""
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy-data/
commit: 65423f81ac69a42006426cbcc1c4a55b8295a89d Author: Horea Christian chymera eu> AuthorDate: Tue Mar 24 03:40:34 2020 + Commit: Horea Christian gmail com> CommitDate: Tue Mar 24 03:41:14 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=65423f81 sci-libs/nipy-data: remove from tree. Unmaintained, not used by any packages Signed-off-by: Horea Christian chymera.eu> sci-libs/nipy-data/metadata.xml | 15 --- sci-libs/nipy-data/nipy-data-0.2.ebuild | 20 2 files changed, 35 deletions(-) diff --git a/sci-libs/nipy-data/metadata.xml b/sci-libs/nipy-data/metadata.xml deleted file mode 100644 index 920dec48f..0 --- a/sci-libs/nipy-data/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ - -http://www.gentoo.org/dtd/metadata.dtd";> - - - horea.chr...@gmail.com - Horea Christian - - - s...@gentoo.org - Gentoo Science Project - - -Nipy-data is a package containing data files needed for many nipy demo tutorials. - - diff --git a/sci-libs/nipy-data/nipy-data-0.2.ebuild b/sci-libs/nipy-data/nipy-data-0.2.ebuild deleted file mode 100644 index 7fb12a06f..0 --- a/sci-libs/nipy-data/nipy-data-0.2.ebuild +++ /dev/null @@ -1,20 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 - -DESCRIPTION="Demo Data for Python Neuroimaging" -HOMEPAGE="http://nipy.org/"; -SRC_URI="http://nipy.org/data-packages/${P}.tar.gz"; - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="" - -RDEPEND="" -DEPEND=""
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: e7a8e94b2ede21f1c75d7bc034b1084da581dcd2 Author: Horea Christian chymera eu> AuthorDate: Tue Jan 7 22:00:48 2020 + Commit: Horea Christian gmail com> CommitDate: Tue Jan 7 22:00:48 2020 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=e7a8e94b sci-libs/nipy: deprecated old versions and PYTHON_COMPAT Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Horea Christian chymera.eu> sci-libs/nipy/nipy-0.4.0.ebuild | 36 sci-libs/nipy/nipy-0.4.1.ebuild | 4 ++-- sci-libs/nipy/nipy-0.4.2.ebuild | 4 ++-- sci-libs/nipy/nipy-.ebuild | 4 ++-- 4 files changed, 6 insertions(+), 42 deletions(-) diff --git a/sci-libs/nipy/nipy-0.4.0.ebuild b/sci-libs/nipy/nipy-0.4.0.ebuild deleted file mode 100644 index ab2562f34..0 --- a/sci-libs/nipy/nipy-0.4.0.ebuild +++ /dev/null @@ -1,36 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) - -inherit distutils-r1 eutils multilib flag-o-matic - -DESCRIPTION="Neuroimaging tools for Python" -HOMEPAGE="http://nipy.org/"; -SRC_URI="mirror://pypi/${P:0:1}/${PN}/${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="" - -RDEPEND=" - dev-python/prov[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] - dev-python/sympy[${PYTHON_USEDEP}] - >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}]" -DEPEND="${RDEPEND} - dev-python/setuptools[${PYTHON_USEDEP}]" - -python_prepare_all() { - distutils-r1_python_prepare_all - # bug #397605 - [[ ${CHOST} == *-darwin* ]] \ - && append-ldflags -bundle "-undefined dynamic_lookup" \ - || append-ldflags -shared - - # nipy uses the horrible numpy.distutils automagic -} diff --git a/sci-libs/nipy/nipy-0.4.1.ebuild b/sci-libs/nipy/nipy-0.4.1.ebuild index 74ad89b9b..779329f40 100644 --- a/sci-libs/nipy/nipy-0.4.1.ebuild +++ b/sci-libs/nipy/nipy-0.4.1.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 -PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) +PYTHON_COMPAT=( python3_6 ) inherit distutils-r1 eutils multilib flag-o-matic diff --git a/sci-libs/nipy/nipy-0.4.2.ebuild b/sci-libs/nipy/nipy-0.4.2.ebuild index 6da963822..7afdf0053 100644 --- a/sci-libs/nipy/nipy-0.4.2.ebuild +++ b/sci-libs/nipy/nipy-0.4.2.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 -PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) +PYTHON_COMPAT=( python3_6 ) inherit distutils-r1 eutils multilib flag-o-matic diff --git a/sci-libs/nipy/nipy-.ebuild b/sci-libs/nipy/nipy-.ebuild index 658e8d984..57a994b69 100644 --- a/sci-libs/nipy/nipy-.ebuild +++ b/sci-libs/nipy/nipy-.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 -PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) +PYTHON_COMPAT=( python3_6 ) inherit distutils-r1 multilib git-r3 flag-o-matic
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: 3cbee5be144730e605f7f483a6a535b7bacbe9d2 Author: Horea Christian yandex com> AuthorDate: Tue Jul 31 12:20:33 2018 + Commit: Horea Christian gmail com> CommitDate: Tue Jul 31 12:20:33 2018 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=3cbee5be sci-libs/nipy: Version bump and removed deprecated version Package-Manager: Portage-2.3.44, Repoman-2.3.10 sci-libs/nipy/nipy-0.3.0.ebuild | 35 --- sci-libs/nipy/nipy-0.4.2.ebuild | 53 + 2 files changed, 53 insertions(+), 35 deletions(-) diff --git a/sci-libs/nipy/nipy-0.3.0.ebuild b/sci-libs/nipy/nipy-0.3.0.ebuild deleted file mode 100644 index 7303490c9..0 --- a/sci-libs/nipy/nipy-0.3.0.ebuild +++ /dev/null @@ -1,35 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 eutils multilib flag-o-matic - -DESCRIPTION="Neuroimaging tools for Python" -HOMEPAGE="http://nipy.org/"; -SRC_URI="mirror://pypi/${P:0:1}/${PN}/${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="" - -RDEPEND=" - sci-libs/scipy[${PYTHON_USEDEP}] - dev-python/sympy[${PYTHON_USEDEP}] - >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}]" -DEPEND="${RDEPEND} - dev-python/setuptools[${PYTHON_USEDEP}]" - -python_prepare_all() { - distutils-r1_python_prepare_all - # bug #397605 - [[ ${CHOST} == *-darwin* ]] \ - && append-ldflags -bundle "-undefined dynamic_lookup" \ - || append-ldflags -shared - - # nipy uses the horrible numpy.distutils automagic -} diff --git a/sci-libs/nipy/nipy-0.4.2.ebuild b/sci-libs/nipy/nipy-0.4.2.ebuild new file mode 100644 index 0..6da963822 --- /dev/null +++ b/sci-libs/nipy/nipy-0.4.2.ebuild @@ -0,0 +1,53 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) + +inherit distutils-r1 eutils multilib flag-o-matic + +DESCRIPTION="Neuroimaging tools for Python" +HOMEPAGE="http://nipy.org/"; +SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND=" + dev-python/prov[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/sympy[${PYTHON_USEDEP}] + >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + " + +DEPEND=" + ${RDEPEND} + dev-python/setuptools[${PYTHON_USEDEP}] + " + +python_prepare_all() { + distutils-r1_python_prepare_all + # bug #397605 + [[ ${CHOST} == *-darwin* ]] \ + && append-ldflags -bundle "-undefined dynamic_lookup" \ + || append-ldflags -shared + + # nipy uses the horrible numpy.distutils automagic +} + +python_test() { + distutils-r1_install_for_testing + cp nipy/testing/*.nii.gz "${BUILD_DIR}/lib/nipy/testing/" + cp nipy/modalities/fmri/tests/*.{mat,npz,txt} "${BUILD_DIR}/lib/nipy/modalities/fmri/tests/" + cp nipy/algorithms/statistics/models/tests/test_data.bin "${BUILD_DIR}/lib/nipy/algorithms/statistics/models/tests" + cp nipy/labs/spatial_models/tests/some_blobs.nii "${BUILD_DIR}/lib/nipy/labs/spatial_models/tests/some_blobs.nii" + mkdir "${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/" + cp nipy/algorithms/diagnostics/tests/data/tsdiff_results.mat "${BUILD_DIR}/lib/nipy/algorithms/diagnostics/tests/data/" + cd "${BUILD_DIR}" || die + echo "backend : agg" > matplotlibrc + nosetests || die +}
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: 8e1eb896a971f81943b09bf9ae25690543b4a30e Author: Horea Christian yandex com> AuthorDate: Mon Jul 30 11:51:31 2018 + Commit: Horea Christian gmail com> CommitDate: Mon Jul 30 11:51:31 2018 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=8e1eb896 sci-libs/nipy: EAPI and PYTHON_COMPAT bump Package-Manager: Portage-2.3.44, Repoman-2.3.10 sci-libs/nipy/nipy-0.4.0.ebuild | 6 +++--- sci-libs/nipy/nipy-0.4.1.ebuild | 6 +++--- sci-libs/nipy/nipy-.ebuild | 6 +++--- 3 files changed, 9 insertions(+), 9 deletions(-) diff --git a/sci-libs/nipy/nipy-0.4.0.ebuild b/sci-libs/nipy/nipy-0.4.0.ebuild index 4db0b9597..ab2562f34 100644 --- a/sci-libs/nipy/nipy-0.4.0.ebuild +++ b/sci-libs/nipy/nipy-0.4.0.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2018 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 -PYTHON_COMPAT=( python{2_7,3_4,3_5} ) +PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) inherit distutils-r1 eutils multilib flag-o-matic diff --git a/sci-libs/nipy/nipy-0.4.1.ebuild b/sci-libs/nipy/nipy-0.4.1.ebuild index a886c1c42..74ad89b9b 100644 --- a/sci-libs/nipy/nipy-0.4.1.ebuild +++ b/sci-libs/nipy/nipy-0.4.1.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2018 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 -PYTHON_COMPAT=( python{2_7,3_4,3_5} ) +PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) inherit distutils-r1 eutils multilib flag-o-matic diff --git a/sci-libs/nipy/nipy-.ebuild b/sci-libs/nipy/nipy-.ebuild index b9357a72f..658e8d984 100644 --- a/sci-libs/nipy/nipy-.ebuild +++ b/sci-libs/nipy/nipy-.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2018 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 -PYTHON_COMPAT=( python{2_7,3_4,3_5} ) +PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) inherit distutils-r1 multilib git-r3 flag-o-matic
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: 18271c7c67a0bf33cacbee05217c8abd536e9f15 Author: Horea Christian yandex com> AuthorDate: Thu Aug 10 13:51:08 2017 + Commit: Benda XU gentoo org> CommitDate: Fri Aug 25 04:03:31 2017 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=18271c7c sci-libs/nipy: version bump Package-Manager: Portage-2.3.6, Repoman-2.3.3 sci-libs/nipy/metadata.xml | 28 ++-- sci-libs/nipy/nipy-0.4.1.ebuild | 40 2 files changed, 54 insertions(+), 14 deletions(-) diff --git a/sci-libs/nipy/metadata.xml b/sci-libs/nipy/metadata.xml index 940d59042..16398ad90 100644 --- a/sci-libs/nipy/metadata.xml +++ b/sci-libs/nipy/metadata.xml @@ -1,18 +1,18 @@ http://www.gentoo.org/dtd/metadata.dtd";> - -horea.chr...@gmail.com -Horea Christian - - -s...@gentoo.org -Gentoo Science Project - - - NIPY is a python project for analysis of structural and functional neuroimaging data. - - -nipy - + + horea.chr...@gmail.com + Horea Christian + + + s...@gentoo.org + Gentoo Science Project + + + NIPY is a python project for analysis of structural and functional neuroimaging data. + + + nipy + diff --git a/sci-libs/nipy/nipy-0.4.1.ebuild b/sci-libs/nipy/nipy-0.4.1.ebuild new file mode 100644 index 0..a886c1c42 --- /dev/null +++ b/sci-libs/nipy/nipy-0.4.1.ebuild @@ -0,0 +1,40 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python{2_7,3_4,3_5} ) + +inherit distutils-r1 eutils multilib flag-o-matic + +DESCRIPTION="Neuroimaging tools for Python" +HOMEPAGE="http://nipy.org/"; +SRC_URI="https://github.com/${PN}/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND=" + dev-python/prov[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/sympy[${PYTHON_USEDEP}] + >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + " + +DEPEND=" + ${RDEPEND} + dev-python/setuptools[${PYTHON_USEDEP}] + " + +python_prepare_all() { + distutils-r1_python_prepare_all + # bug #397605 + [[ ${CHOST} == *-darwin* ]] \ + && append-ldflags -bundle "-undefined dynamic_lookup" \ + || append-ldflags -shared + + # nipy uses the horrible numpy.distutils automagic +}
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: e42015ed624b0fea7cc44839bf6670aded6c7e96 Author: Justin Lecher gentoo org> AuthorDate: Sun Aug 14 19:23:49 2016 + Commit: Justin Lecher gentoo org> CommitDate: Sun Aug 14 19:24:15 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=e42015ed sci-libs/nipy: Add missing dep Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=589312 Package-Manager: portage-2.3.0 Signed-off-by: Justin Lecher gentoo.org> sci-libs/nipy/nipy-0.4.0.ebuild | 3 ++- sci-libs/nipy/nipy-.ebuild | 3 ++- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/sci-libs/nipy/nipy-0.4.0.ebuild b/sci-libs/nipy/nipy-0.4.0.ebuild index ae7d99c..5cb4a33 100644 --- a/sci-libs/nipy/nipy-0.4.0.ebuild +++ b/sci-libs/nipy/nipy-0.4.0.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2016 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ @@ -18,6 +18,7 @@ KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" IUSE="" RDEPEND=" + dev-python/prov[${PYTHON_USEDEP}] sci-libs/scipy[${PYTHON_USEDEP}] dev-python/sympy[${PYTHON_USEDEP}] >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}] diff --git a/sci-libs/nipy/nipy-.ebuild b/sci-libs/nipy/nipy-.ebuild index 72f40e6..8e48a80 100644 --- a/sci-libs/nipy/nipy-.ebuild +++ b/sci-libs/nipy/nipy-.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2016 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ @@ -19,6 +19,7 @@ IUSE="" KEYWORDS="" DEPEND=" + dev-python/prov[${PYTHON_USEDEP}] dev-python/setuptools[${PYTHON_USEDEP}] dev-python/numpy[${PYTHON_USEDEP}]" RDEPEND="${DEPEND}
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy-templates/, sci-libs/nipy-data/
commit: 68db4575a96e18e076410392cc25005009ae3a34 Author: Justin Lecher gentoo org> AuthorDate: Fri Feb 12 08:41:30 2016 + Commit: Justin Lecher gentoo org> CommitDate: Fri Feb 12 08:41:30 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=68db4575 Fix more herds usages Signed-off-by: Justin Lecher gentoo.org> sci-libs/nipy-data/metadata.xml | 7 +-- sci-libs/nipy-templates/metadata.xml | 7 +-- 2 files changed, 10 insertions(+), 4 deletions(-) diff --git a/sci-libs/nipy-data/metadata.xml b/sci-libs/nipy-data/metadata.xml index d95784a..4950887 100644 --- a/sci-libs/nipy-data/metadata.xml +++ b/sci-libs/nipy-data/metadata.xml @@ -1,11 +1,14 @@ http://www.gentoo.org/dtd/metadata.dtd";> - sci - + h@mail.ru Horea Christian + +s...@gentoo.org +Gentoo Science Project + Nipy-data is a package containing data files needed for many nipy demo tutorials. diff --git a/sci-libs/nipy-templates/metadata.xml b/sci-libs/nipy-templates/metadata.xml index 46539ff..335e280 100644 --- a/sci-libs/nipy-templates/metadata.xml +++ b/sci-libs/nipy-templates/metadata.xml @@ -1,11 +1,14 @@ http://www.gentoo.org/dtd/metadata.dtd";> - sci - + h@mail.ru Horea Christian + +s...@gentoo.org +Gentoo Science Project + Nipy-templates is a package containing template files needed by some nipy functions.
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy-data/
commit: cc12ab13b6d3e6a0192a27f61f52fec2b2b625a3 Author: Horea Christian mail ru> AuthorDate: Fri Feb 5 15:58:45 2016 + Commit: Marius Brehler linux sungazer de> CommitDate: Fri Feb 5 15:58:45 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=cc12ab13 sci-libs/nipy-data: removed changelog clutter Package-Manager: portage-2.2.27 sci-libs/nipy-data/ChangeLog | 42 -- 1 file changed, 42 deletions(-) diff --git a/sci-libs/nipy-data/ChangeLog b/sci-libs/nipy-data/ChangeLog deleted file mode 100644 index f56e44b..000 --- a/sci-libs/nipy-data/ChangeLog +++ /dev/null @@ -1,42 +0,0 @@ -# ChangeLog for sci-libs/nipy-data -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Id$ - -<<< HEAD -<<< HEAD -<<< HEAD - 19 Dec 2015; Horea Christian nipy-data-0.2.ebuild: - sci-libs/nipy-data: removed unused eclasses, updated description - - 17 Dec 2015; Horea Christian nipy-data-0.2.ebuild: - sci-libs/nipy-data: no stable packages in the overlay - - 17 Dec 2015; Horea Christian nipy-data-0.2.ebuild: - sci-libs/nipy-data: removed emtpy deps - - 17 Dec 2015; Horea Christian nipy-data-0.2.ebuild: - sci-libs/nipy-data: marked package as stable - -=== ->>> 6e709b8... sci-libs/nipy-data: new package -=== -=== - 19 Dec 2015; Horea Christian nipy-data-0.2.ebuild: - sci-libs/nipy-data: removed unused eclasses, updated description - ->>> 841343a... sci-libs/nipy-data: removed unused eclasses, updated description - 17 Dec 2015; Horea Christian nipy-data-0.2.ebuild: - sci-libs/nipy-data: no stable packages in the overlay - - 17 Dec 2015; Horea Christian nipy-data-0.2.ebuild: - sci-libs/nipy-data: removed emtpy deps - - 17 Dec 2015; Horea Christian nipy-data-0.2.ebuild: - sci-libs/nipy-data: marked package as stable - ->>> f7adcb4... sci-libs/nipy-data: marked package as stable -*nipy-data-0.2 (16 Dec 2015) - - 16 Dec 2015; Horea Christian +metadata.xml, - +nipy-data-0.2.ebuild: - sci-libs/nipy-data: new package
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy-data/
commit: bd5c9e320df505d2b3a86aba21b3ef9e682f6fea Author: Horea Christian mail ru> AuthorDate: Fri Feb 5 15:57:38 2016 + Commit: Marius Brehler linux sungazer de> CommitDate: Fri Feb 5 15:57:38 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=bd5c9e32 sci-libs/nipy-data: new package Package-Manager: portage-2.2.27 sci-libs/nipy-data/ChangeLog| 42 + sci-libs/nipy-data/metadata.xml | 12 ++ sci-libs/nipy-data/nipy-data-0.2.ebuild | 21 + 3 files changed, 75 insertions(+) diff --git a/sci-libs/nipy-data/ChangeLog b/sci-libs/nipy-data/ChangeLog new file mode 100644 index 000..f56e44b --- /dev/null +++ b/sci-libs/nipy-data/ChangeLog @@ -0,0 +1,42 @@ +# ChangeLog for sci-libs/nipy-data +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Id$ + +<<< HEAD +<<< HEAD +<<< HEAD + 19 Dec 2015; Horea Christian nipy-data-0.2.ebuild: + sci-libs/nipy-data: removed unused eclasses, updated description + + 17 Dec 2015; Horea Christian nipy-data-0.2.ebuild: + sci-libs/nipy-data: no stable packages in the overlay + + 17 Dec 2015; Horea Christian nipy-data-0.2.ebuild: + sci-libs/nipy-data: removed emtpy deps + + 17 Dec 2015; Horea Christian nipy-data-0.2.ebuild: + sci-libs/nipy-data: marked package as stable + +=== +>>> 6e709b8... sci-libs/nipy-data: new package +=== +=== + 19 Dec 2015; Horea Christian nipy-data-0.2.ebuild: + sci-libs/nipy-data: removed unused eclasses, updated description + +>>> 841343a... sci-libs/nipy-data: removed unused eclasses, updated description + 17 Dec 2015; Horea Christian nipy-data-0.2.ebuild: + sci-libs/nipy-data: no stable packages in the overlay + + 17 Dec 2015; Horea Christian nipy-data-0.2.ebuild: + sci-libs/nipy-data: removed emtpy deps + + 17 Dec 2015; Horea Christian nipy-data-0.2.ebuild: + sci-libs/nipy-data: marked package as stable + +>>> f7adcb4... sci-libs/nipy-data: marked package as stable +*nipy-data-0.2 (16 Dec 2015) + + 16 Dec 2015; Horea Christian +metadata.xml, + +nipy-data-0.2.ebuild: + sci-libs/nipy-data: new package diff --git a/sci-libs/nipy-data/metadata.xml b/sci-libs/nipy-data/metadata.xml new file mode 100644 index 000..d95784a --- /dev/null +++ b/sci-libs/nipy-data/metadata.xml @@ -0,0 +1,12 @@ + +http://www.gentoo.org/dtd/metadata.dtd";> + + sci + +h@mail.ru +Horea Christian + + + Nipy-data is a package containing data files needed for many nipy demo tutorials. + + diff --git a/sci-libs/nipy-data/nipy-data-0.2.ebuild b/sci-libs/nipy-data/nipy-data-0.2.ebuild new file mode 100644 index 000..fbec5c4 --- /dev/null +++ b/sci-libs/nipy-data/nipy-data-0.2.ebuild @@ -0,0 +1,21 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit distutils-r1 + +DESCRIPTION="Demo Data for Python Neuroimaging" +HOMEPAGE="http://nipy.org/"; +SRC_URI="http://nipy.org/data-packages/${P}.tar.gz"; + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND="" +DEPEND=""
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy-data/
commit: 1de50698e5e7d8fde34771e2ff382f67f3ce96df Author: Horea Christian mail ru> AuthorDate: Fri Feb 5 16:01:56 2016 + Commit: Marius Brehler linux sungazer de> CommitDate: Fri Feb 5 16:01:56 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=1de50698 sci-libs/nipy-data: EAPI 6 Package-Manager: portage-2.2.27 sci-libs/nipy-data/nipy-data-0.2.ebuild | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sci-libs/nipy-data/nipy-data-0.2.ebuild b/sci-libs/nipy-data/nipy-data-0.2.ebuild index fbec5c4..b8521f4 100644 --- a/sci-libs/nipy-data/nipy-data-0.2.ebuild +++ b/sci-libs/nipy-data/nipy-data-0.2.ebuild @@ -2,7 +2,7 @@ # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI=5 +EAPI=6 PYTHON_COMPAT=( python2_7 )
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy-templates/
commit: b03e02f96b5296231157912581b0a00f85146db7 Author: Horea Christian mail ru> AuthorDate: Fri Feb 5 16:01:12 2016 + Commit: Marius Brehler linux sungazer de> CommitDate: Fri Feb 5 16:01:12 2016 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=b03e02f9 sci-libs/nipy-templates: new ebuild Package-Manager: portage-2.2.27 sci-libs/nipy-templates/metadata.xml | 12 sci-libs/nipy-templates/nipy-templates-0.2.ebuild | 21 + 2 files changed, 33 insertions(+) diff --git a/sci-libs/nipy-templates/metadata.xml b/sci-libs/nipy-templates/metadata.xml new file mode 100644 index 000..46539ff --- /dev/null +++ b/sci-libs/nipy-templates/metadata.xml @@ -0,0 +1,12 @@ + +http://www.gentoo.org/dtd/metadata.dtd";> + + sci + +h@mail.ru +Horea Christian + + + Nipy-templates is a package containing template files needed by some nipy functions. + + diff --git a/sci-libs/nipy-templates/nipy-templates-0.2.ebuild b/sci-libs/nipy-templates/nipy-templates-0.2.ebuild new file mode 100644 index 000..d1de919 --- /dev/null +++ b/sci-libs/nipy-templates/nipy-templates-0.2.ebuild @@ -0,0 +1,21 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +PYTHON_COMPAT=( python2_7 ) + +inherit distutils-r1 + +DESCRIPTION="Normalization templates for Python Neuroimaging" +HOMEPAGE="http://nipy.org/"; +SRC_URI="http://nipy.org/data-packages/${P}.tar.gz"; + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND="" +DEPEND=""
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: 11abed023da7f2d1fb261332dacf829a4c1a666b Author: Horea Christian mail ru> AuthorDate: Wed Nov 11 22:38:40 2015 + Commit: Justin Lecher gentoo org> CommitDate: Wed Nov 11 22:38:40 2015 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=11abed02 sci-libs/nipy: version bump Package-Manager: portage-2.2.23 sci-libs/nipy/ChangeLog | 8 ++-- sci-libs/nipy/nipy-0.4.0.ebuild | 36 2 files changed, 42 insertions(+), 2 deletions(-) diff --git a/sci-libs/nipy/ChangeLog b/sci-libs/nipy/ChangeLog index cac9346..29eb490 100644 --- a/sci-libs/nipy/ChangeLog +++ b/sci-libs/nipy/ChangeLog @@ -1,8 +1,12 @@ # ChangeLog for sci-libs/nipy -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Id$ +*nipy-0.4.0 (11 Nov 2015) + + 11 Nov 2015; Horea Christian +nipy-0.4.0.ebuild: + sci-libs/nipy: version bump + 06 Jan 2014; Justin Lecher nipy-0.3.0.ebuild, nipy-.ebuild, metadata.xml: Switch from git-2 to git-r3 - diff --git a/sci-libs/nipy/nipy-0.4.0.ebuild b/sci-libs/nipy/nipy-0.4.0.ebuild new file mode 100644 index 000..e9d3f13 --- /dev/null +++ b/sci-libs/nipy/nipy-0.4.0.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit distutils-r1 eutils multilib flag-o-matic + +DESCRIPTION="Neuroimaging tools for Python" +HOMEPAGE="http://nipy.org/"; +SRC_URI="mirror://pypi/${P:0:1}/${PN}/${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +DEPEND=" + dev-python/setuptools[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}]" +RDEPEND="${DEPEND} + sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/sympy[${PYTHON_USEDEP}] + >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]" + +python_prepare_all() { + distutils-r1_python_prepare_all + # bug #397605 + [[ ${CHOST} == *-darwin* ]] \ + && append-ldflags -bundle "-undefined dynamic_lookup" \ + || append-ldflags -shared + + # nipy uses the horrible numpy.distutils automagic +}
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: 425559a02e6d6efc06f3fdc5be33ede0b8259e95 Author: Horea Christian mail ru> AuthorDate: Thu Nov 12 14:14:03 2015 + Commit: Justin Lecher gentoo org> CommitDate: Thu Nov 12 14:14:03 2015 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=425559a0 sci-libs/nipy: updated dependency list Package-Manager: portage-2.2.23 sci-libs/nipy/ChangeLog | 4 sci-libs/nipy/nipy-0.3.0.ebuild | 16 sci-libs/nipy/nipy-0.4.0.ebuild | 14 +++--- 3 files changed, 19 insertions(+), 15 deletions(-) diff --git a/sci-libs/nipy/ChangeLog b/sci-libs/nipy/ChangeLog index 29eb490..f63ab67 100644 --- a/sci-libs/nipy/ChangeLog +++ b/sci-libs/nipy/ChangeLog @@ -2,6 +2,10 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Id$ + 12 Nov 2015; Horea Christian nipy-0.3.0.ebuild, + nipy-0.4.0.ebuild: + sci-libs/nipy: updated dependency list + *nipy-0.4.0 (11 Nov 2015) 11 Nov 2015; Horea Christian +nipy-0.4.0.ebuild: diff --git a/sci-libs/nipy/nipy-0.3.0.ebuild b/sci-libs/nipy/nipy-0.3.0.ebuild index d748c21..50878d9 100644 --- a/sci-libs/nipy/nipy-0.3.0.ebuild +++ b/sci-libs/nipy/nipy-0.3.0.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ @@ -17,13 +17,13 @@ SLOT="0" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" IUSE="" -DEPEND=" - dev-python/setuptools[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}]" -RDEPEND="${DEPEND} - sci-libs/scipy[${PYTHON_USEDEP}] - dev-python/sympy[${PYTHON_USEDEP}] - >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]" +RDEPEND=" +sci-libs/scipy[${PYTHON_USEDEP}] +dev-python/sympy[${PYTHON_USEDEP}] +>=sci-libs/nibabel-1.2[${PYTHON_USEDEP}] +dev-python/numpy[${PYTHON_USEDEP}]" +DEPEND="${RDEPEND} +dev-python/setuptools[${PYTHON_USEDEP}]" python_prepare_all() { distutils-r1_python_prepare_all diff --git a/sci-libs/nipy/nipy-0.4.0.ebuild b/sci-libs/nipy/nipy-0.4.0.ebuild index e9d3f13..50878d9 100644 --- a/sci-libs/nipy/nipy-0.4.0.ebuild +++ b/sci-libs/nipy/nipy-0.4.0.ebuild @@ -17,13 +17,13 @@ SLOT="0" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" IUSE="" -DEPEND=" - dev-python/setuptools[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}]" -RDEPEND="${DEPEND} - sci-libs/scipy[${PYTHON_USEDEP}] - dev-python/sympy[${PYTHON_USEDEP}] - >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}]" +RDEPEND=" +sci-libs/scipy[${PYTHON_USEDEP}] +dev-python/sympy[${PYTHON_USEDEP}] +>=sci-libs/nibabel-1.2[${PYTHON_USEDEP}] +dev-python/numpy[${PYTHON_USEDEP}]" +DEPEND="${RDEPEND} +dev-python/setuptools[${PYTHON_USEDEP}]" python_prepare_all() { distutils-r1_python_prepare_all
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/
commit: 839c070eb0dfb5206b8f37dd87165fcecafa0eb5 Author: Horea Christian mail ru> AuthorDate: Thu Nov 12 14:15:22 2015 + Commit: Justin Lecher gentoo org> CommitDate: Thu Nov 12 14:15:22 2015 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=839c070e sci-libs/nipy: removed leading spaces Package-Manager: portage-2.2.23 sci-libs/nipy/ChangeLog | 4 sci-libs/nipy/nipy-0.3.0.ebuild | 10 +- sci-libs/nipy/nipy-0.4.0.ebuild | 10 +- 3 files changed, 14 insertions(+), 10 deletions(-) diff --git a/sci-libs/nipy/ChangeLog b/sci-libs/nipy/ChangeLog index f63ab67..9061577 100644 --- a/sci-libs/nipy/ChangeLog +++ b/sci-libs/nipy/ChangeLog @@ -4,6 +4,10 @@ 12 Nov 2015; Horea Christian nipy-0.3.0.ebuild, nipy-0.4.0.ebuild: + sci-libs/nipy: removed leading spaces + + 12 Nov 2015; Horea Christian nipy-0.3.0.ebuild, + nipy-0.4.0.ebuild: sci-libs/nipy: updated dependency list *nipy-0.4.0 (11 Nov 2015) diff --git a/sci-libs/nipy/nipy-0.3.0.ebuild b/sci-libs/nipy/nipy-0.3.0.ebuild index 50878d9..ae7d99c 100644 --- a/sci-libs/nipy/nipy-0.3.0.ebuild +++ b/sci-libs/nipy/nipy-0.3.0.ebuild @@ -18,12 +18,12 @@ KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" IUSE="" RDEPEND=" -sci-libs/scipy[${PYTHON_USEDEP}] -dev-python/sympy[${PYTHON_USEDEP}] ->=sci-libs/nibabel-1.2[${PYTHON_USEDEP}] -dev-python/numpy[${PYTHON_USEDEP}]" + sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/sympy[${PYTHON_USEDEP}] + >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}]" DEPEND="${RDEPEND} -dev-python/setuptools[${PYTHON_USEDEP}]" + dev-python/setuptools[${PYTHON_USEDEP}]" python_prepare_all() { distutils-r1_python_prepare_all diff --git a/sci-libs/nipy/nipy-0.4.0.ebuild b/sci-libs/nipy/nipy-0.4.0.ebuild index 50878d9..ae7d99c 100644 --- a/sci-libs/nipy/nipy-0.4.0.ebuild +++ b/sci-libs/nipy/nipy-0.4.0.ebuild @@ -18,12 +18,12 @@ KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" IUSE="" RDEPEND=" -sci-libs/scipy[${PYTHON_USEDEP}] -dev-python/sympy[${PYTHON_USEDEP}] ->=sci-libs/nibabel-1.2[${PYTHON_USEDEP}] -dev-python/numpy[${PYTHON_USEDEP}]" + sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/sympy[${PYTHON_USEDEP}] + >=sci-libs/nibabel-1.2[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}]" DEPEND="${RDEPEND} -dev-python/setuptools[${PYTHON_USEDEP}]" + dev-python/setuptools[${PYTHON_USEDEP}]" python_prepare_all() { distutils-r1_python_prepare_all
[gentoo-commits] proj/sci:master commit in: sci-libs/nipy/, sci-chemistry/modeller/
commit: 31e09304ca5401a29292a36e2e582f713cf7939b Author: Justin Lecher gentoo org> AuthorDate: Thu Oct 22 12:28:31 2015 + Commit: Justin Lecher gentoo org> CommitDate: Thu Oct 22 12:28:31 2015 + URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=31e09304 Drop deprecated parallel python eclass support Signed-off-by: Justin Lecher gentoo.org> sci-chemistry/modeller/modeller-9.12-r3.ebuild | 1 - sci-libs/nipy/nipy-0.3.0.ebuild| 1 - sci-libs/nipy/nipy-.ebuild | 1 - 3 files changed, 3 deletions(-) diff --git a/sci-chemistry/modeller/modeller-9.12-r3.ebuild b/sci-chemistry/modeller/modeller-9.12-r3.ebuild index 292907f..c1a5d81 100644 --- a/sci-chemistry/modeller/modeller-9.12-r3.ebuild +++ b/sci-chemistry/modeller/modeller-9.12-r3.ebuild @@ -27,7 +27,6 @@ INPATH="${EPREFIX}"/opt/modeller${ver} QA_PREBUILT="/opt/*" -DISTUTILS_NO_PARALLEL_BUILD=true pkg_setup() { case ${ARCH} in diff --git a/sci-libs/nipy/nipy-0.3.0.ebuild b/sci-libs/nipy/nipy-0.3.0.ebuild index 6a07e3c..d748c21 100644 --- a/sci-libs/nipy/nipy-0.3.0.ebuild +++ b/sci-libs/nipy/nipy-0.3.0.ebuild @@ -5,7 +5,6 @@ EAPI=5 PYTHON_COMPAT=( python2_7 ) -DISTUTILS_NO_PARALLEL_BUILD=true inherit distutils-r1 eutils multilib flag-o-matic diff --git a/sci-libs/nipy/nipy-.ebuild b/sci-libs/nipy/nipy-.ebuild index 446065c..72f40e6 100644 --- a/sci-libs/nipy/nipy-.ebuild +++ b/sci-libs/nipy/nipy-.ebuild @@ -5,7 +5,6 @@ EAPI=5 PYTHON_COMPAT=( python2_7 ) -DISTUTILS_NO_PARALLEL_BUILD=true inherit distutils-r1 multilib git-r3 flag-o-matic