[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/

2017-12-01 Thread David Seifert 
commit: bff5023b358935fac57d2cd6f43e575a867af3d6
Author: David Seifert  gentoo  org>
AuthorDate: Fri Dec  1 22:42:35 2017 +
Commit: David Seifert  gentoo  org>
CommitDate: Fri Dec  1 23:00:45 2017 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bff5023b

sci-chemistry/prekin: [QA] Fix DESCRIPTION.toolong

 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index 7f90ace13b9..8bea9cc5230 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -7,7 +7,7 @@ inherit toolchain-funcs eutils multilib
 
 MY_P=${PN}.${PV}
 
-DESCRIPTION="Prepares molecular kinemages (input files for Mage & KiNG) from 
PDB-format coordinate files"
+DESCRIPTION="Prepares molecular kinemages from PDB-format coordinate files"
 HOMEPAGE="http://kinemage.biochem.duke.edu/software/prekin.php";
 
SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${MY_P}.src.tgz";

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/

2018-04-17 Thread David Seifert 
commit: 7c47eb5a61bc4cd600ed38c5b6c351c0c10c3aa4
Author: David Seifert  gentoo  org>
AuthorDate: Tue Apr 17 09:48:46 2018 +
Commit: David Seifert  gentoo  org>
CommitDate: Tue Apr 17 20:25:19 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7c47eb5a

sci-chemistry/prekin: Port to EAPI 6

Package-Manager: Portage-2.3.29, Repoman-2.3.9

 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild | 38 ++-
 1 file changed, 17 insertions(+), 21 deletions(-)

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index 8bea9cc5230..db0c34eca49 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI="2"
+EAPI=6
 
-inherit toolchain-funcs eutils multilib
+inherit toolchain-funcs
 
 MY_P=${PN}.${PV}
 
@@ -16,37 +16,33 @@ SLOT="0"
 KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
 IUSE="X"
 
-RDEPEND="x11-libs/libXext
+RDEPEND="
+   x11-libs/libXext
x11-libs/libXmu
x11-libs/libX11
x11-libs/libXt
-   X? ( >=x11-libs/motif-2.3:0 )"
+   X? ( >=x11-libs/motif-2.3:0= )"
 DEPEND="${RDEPEND}"
 
 S=${WORKDIR}/${MY_P}
+PATCHES=(
+   "${FILESDIR}"/${PV}-Makefile.patch
+   "${FILESDIR}"/${PV}-overflow.patch
+)
 
-src_prepare() {
-   epatch \
-   "${FILESDIR}"/${PV}-Makefile.patch \
-   "${FILESDIR}"/${PV}-overflow.patch
-   sed  \
+src_configure() {
+   tc-export CC
+
+   sed \
-e 's:cc:$(CC):g' \
-e "s:GENTOOLIBDIR:$(get_libdir):g" \
-   "${S}"/Makefile.linux > Makefile || die
+   Makefile.linux > Makefile || die
 }
 
 src_compile() {
-   local mytarget
-
-   if use X; then
-   mytarget="${PN}"
-   else
-   mytarget="nogui"
-   fi
-
-   emake CC="$(tc-getCC)" ${mytarget} || die
+   emake $(usex X ${PN} nogui)
 }
 
 src_install() {
-   dobin "${S}"/prekin || die
+   dobin prekin
 }

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/

2018-04-17 Thread David Seifert 
commit: 7c47eb5a61bc4cd600ed38c5b6c351c0c10c3aa4
Author: David Seifert  gentoo  org>
AuthorDate: Tue Apr 17 09:48:46 2018 +
Commit: David Seifert  gentoo  org>
CommitDate: Tue Apr 17 20:25:19 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7c47eb5a

sci-chemistry/prekin: Port to EAPI 6

Package-Manager: Portage-2.3.29, Repoman-2.3.9

 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild | 38 ++-
 1 file changed, 17 insertions(+), 21 deletions(-)

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index 8bea9cc5230..db0c34eca49 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI="2"
+EAPI=6
 
-inherit toolchain-funcs eutils multilib
+inherit toolchain-funcs
 
 MY_P=${PN}.${PV}
 
@@ -16,37 +16,33 @@ SLOT="0"
 KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
 IUSE="X"
 
-RDEPEND="x11-libs/libXext
+RDEPEND="
+   x11-libs/libXext
x11-libs/libXmu
x11-libs/libX11
x11-libs/libXt
-   X? ( >=x11-libs/motif-2.3:0 )"
+   X? ( >=x11-libs/motif-2.3:0= )"
 DEPEND="${RDEPEND}"
 
 S=${WORKDIR}/${MY_P}
+PATCHES=(
+   "${FILESDIR}"/${PV}-Makefile.patch
+   "${FILESDIR}"/${PV}-overflow.patch
+)
 
-src_prepare() {
-   epatch \
-   "${FILESDIR}"/${PV}-Makefile.patch \
-   "${FILESDIR}"/${PV}-overflow.patch
-   sed  \
+src_configure() {
+   tc-export CC
+
+   sed \
-e 's:cc:$(CC):g' \
-e "s:GENTOOLIBDIR:$(get_libdir):g" \
-   "${S}"/Makefile.linux > Makefile || die
+   Makefile.linux > Makefile || die
 }
 
 src_compile() {
-   local mytarget
-
-   if use X; then
-   mytarget="${PN}"
-   else
-   mytarget="nogui"
-   fi
-
-   emake CC="$(tc-getCC)" ${mytarget} || die
+   emake $(usex X ${PN} nogui)
 }
 
 src_install() {
-   dobin "${S}"/prekin || die
+   dobin prekin
 }

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/

2017-12-01 Thread David Seifert 
commit: bff5023b358935fac57d2cd6f43e575a867af3d6
Author: David Seifert  gentoo  org>
AuthorDate: Fri Dec  1 22:42:35 2017 +
Commit: David Seifert  gentoo  org>
CommitDate: Fri Dec  1 23:00:45 2017 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bff5023b

sci-chemistry/prekin: [QA] Fix DESCRIPTION.toolong

 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index 7f90ace13b9..8bea9cc5230 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -7,7 +7,7 @@ inherit toolchain-funcs eutils multilib
 
 MY_P=${PN}.${PV}
 
-DESCRIPTION="Prepares molecular kinemages (input files for Mage & KiNG) from 
PDB-format coordinate files"
+DESCRIPTION="Prepares molecular kinemages from PDB-format coordinate files"
 HOMEPAGE="http://kinemage.biochem.duke.edu/software/prekin.php";
 
SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${MY_P}.src.tgz";

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/

2017-12-01 Thread David Seifert 
commit: bff5023b358935fac57d2cd6f43e575a867af3d6
Author: David Seifert  gentoo  org>
AuthorDate: Fri Dec  1 22:42:35 2017 +
Commit: David Seifert  gentoo  org>
CommitDate: Fri Dec  1 23:00:45 2017 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bff5023b

sci-chemistry/prekin: [QA] Fix DESCRIPTION.toolong

 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index 7f90ace13b9..8bea9cc5230 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -7,7 +7,7 @@ inherit toolchain-funcs eutils multilib
 
 MY_P=${PN}.${PV}
 
-DESCRIPTION="Prepares molecular kinemages (input files for Mage & KiNG) from 
PDB-format coordinate files"
+DESCRIPTION="Prepares molecular kinemages from PDB-format coordinate files"
 HOMEPAGE="http://kinemage.biochem.duke.edu/software/prekin.php";
 
SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${MY_P}.src.tgz";

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/

2018-04-17 Thread David Seifert 
commit: 7c47eb5a61bc4cd600ed38c5b6c351c0c10c3aa4
Author: David Seifert  gentoo  org>
AuthorDate: Tue Apr 17 09:48:46 2018 +
Commit: David Seifert  gentoo  org>
CommitDate: Tue Apr 17 20:25:19 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7c47eb5a

sci-chemistry/prekin: Port to EAPI 6

Package-Manager: Portage-2.3.29, Repoman-2.3.9

 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild | 38 ++-
 1 file changed, 17 insertions(+), 21 deletions(-)

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index 8bea9cc5230..db0c34eca49 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI="2"
+EAPI=6
 
-inherit toolchain-funcs eutils multilib
+inherit toolchain-funcs
 
 MY_P=${PN}.${PV}
 
@@ -16,37 +16,33 @@ SLOT="0"
 KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
 IUSE="X"
 
-RDEPEND="x11-libs/libXext
+RDEPEND="
+   x11-libs/libXext
x11-libs/libXmu
x11-libs/libX11
x11-libs/libXt
-   X? ( >=x11-libs/motif-2.3:0 )"
+   X? ( >=x11-libs/motif-2.3:0= )"
 DEPEND="${RDEPEND}"
 
 S=${WORKDIR}/${MY_P}
+PATCHES=(
+   "${FILESDIR}"/${PV}-Makefile.patch
+   "${FILESDIR}"/${PV}-overflow.patch
+)
 
-src_prepare() {
-   epatch \
-   "${FILESDIR}"/${PV}-Makefile.patch \
-   "${FILESDIR}"/${PV}-overflow.patch
-   sed  \
+src_configure() {
+   tc-export CC
+
+   sed \
-e 's:cc:$(CC):g' \
-e "s:GENTOOLIBDIR:$(get_libdir):g" \
-   "${S}"/Makefile.linux > Makefile || die
+   Makefile.linux > Makefile || die
 }
 
 src_compile() {
-   local mytarget
-
-   if use X; then
-   mytarget="${PN}"
-   else
-   mytarget="nogui"
-   fi
-
-   emake CC="$(tc-getCC)" ${mytarget} || die
+   emake $(usex X ${PN} nogui)
 }
 
 src_install() {
-   dobin "${S}"/prekin || die
+   dobin prekin
 }

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/

2018-04-17 Thread David Seifert 
commit: 7c47eb5a61bc4cd600ed38c5b6c351c0c10c3aa4
Author: David Seifert  gentoo  org>
AuthorDate: Tue Apr 17 09:48:46 2018 +
Commit: David Seifert  gentoo  org>
CommitDate: Tue Apr 17 20:25:19 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7c47eb5a

sci-chemistry/prekin: Port to EAPI 6

Package-Manager: Portage-2.3.29, Repoman-2.3.9

 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild | 38 ++-
 1 file changed, 17 insertions(+), 21 deletions(-)

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index 8bea9cc5230..db0c34eca49 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI="2"
+EAPI=6
 
-inherit toolchain-funcs eutils multilib
+inherit toolchain-funcs
 
 MY_P=${PN}.${PV}
 
@@ -16,37 +16,33 @@ SLOT="0"
 KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
 IUSE="X"
 
-RDEPEND="x11-libs/libXext
+RDEPEND="
+   x11-libs/libXext
x11-libs/libXmu
x11-libs/libX11
x11-libs/libXt
-   X? ( >=x11-libs/motif-2.3:0 )"
+   X? ( >=x11-libs/motif-2.3:0= )"
 DEPEND="${RDEPEND}"
 
 S=${WORKDIR}/${MY_P}
+PATCHES=(
+   "${FILESDIR}"/${PV}-Makefile.patch
+   "${FILESDIR}"/${PV}-overflow.patch
+)
 
-src_prepare() {
-   epatch \
-   "${FILESDIR}"/${PV}-Makefile.patch \
-   "${FILESDIR}"/${PV}-overflow.patch
-   sed  \
+src_configure() {
+   tc-export CC
+
+   sed \
-e 's:cc:$(CC):g' \
-e "s:GENTOOLIBDIR:$(get_libdir):g" \
-   "${S}"/Makefile.linux > Makefile || die
+   Makefile.linux > Makefile || die
 }
 
 src_compile() {
-   local mytarget
-
-   if use X; then
-   mytarget="${PN}"
-   else
-   mytarget="nogui"
-   fi
-
-   emake CC="$(tc-getCC)" ${mytarget} || die
+   emake $(usex X ${PN} nogui)
 }
 
 src_install() {
-   dobin "${S}"/prekin || die
+   dobin prekin
 }

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/

2017-12-01 Thread David Seifert 
commit: bff5023b358935fac57d2cd6f43e575a867af3d6
Author: David Seifert  gentoo  org>
AuthorDate: Fri Dec  1 22:42:35 2017 +
Commit: David Seifert  gentoo  org>
CommitDate: Fri Dec  1 23:00:45 2017 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bff5023b

sci-chemistry/prekin: [QA] Fix DESCRIPTION.toolong

 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index 7f90ace13b9..8bea9cc5230 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -7,7 +7,7 @@ inherit toolchain-funcs eutils multilib
 
 MY_P=${PN}.${PV}
 
-DESCRIPTION="Prepares molecular kinemages (input files for Mage & KiNG) from 
PDB-format coordinate files"
+DESCRIPTION="Prepares molecular kinemages from PDB-format coordinate files"
 HOMEPAGE="http://kinemage.biochem.duke.edu/software/prekin.php";
 
SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${MY_P}.src.tgz";

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/

2017-12-01 Thread David Seifert 
commit: bff5023b358935fac57d2cd6f43e575a867af3d6
Author: David Seifert  gentoo  org>
AuthorDate: Fri Dec  1 22:42:35 2017 +
Commit: David Seifert  gentoo  org>
CommitDate: Fri Dec  1 23:00:45 2017 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bff5023b

sci-chemistry/prekin: [QA] Fix DESCRIPTION.toolong

 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index 7f90ace13b9..8bea9cc5230 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -7,7 +7,7 @@ inherit toolchain-funcs eutils multilib
 
 MY_P=${PN}.${PV}
 
-DESCRIPTION="Prepares molecular kinemages (input files for Mage & KiNG) from 
PDB-format coordinate files"
+DESCRIPTION="Prepares molecular kinemages from PDB-format coordinate files"
 HOMEPAGE="http://kinemage.biochem.duke.edu/software/prekin.php";
 
SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${MY_P}.src.tgz";

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/

2018-04-17 Thread David Seifert 
commit: 7c47eb5a61bc4cd600ed38c5b6c351c0c10c3aa4
Author: David Seifert  gentoo  org>
AuthorDate: Tue Apr 17 09:48:46 2018 +
Commit: David Seifert  gentoo  org>
CommitDate: Tue Apr 17 20:25:19 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7c47eb5a

sci-chemistry/prekin: Port to EAPI 6

Package-Manager: Portage-2.3.29, Repoman-2.3.9

 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild | 38 ++-
 1 file changed, 17 insertions(+), 21 deletions(-)

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index 8bea9cc5230..db0c34eca49 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI="2"
+EAPI=6
 
-inherit toolchain-funcs eutils multilib
+inherit toolchain-funcs
 
 MY_P=${PN}.${PV}
 
@@ -16,37 +16,33 @@ SLOT="0"
 KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
 IUSE="X"
 
-RDEPEND="x11-libs/libXext
+RDEPEND="
+   x11-libs/libXext
x11-libs/libXmu
x11-libs/libX11
x11-libs/libXt
-   X? ( >=x11-libs/motif-2.3:0 )"
+   X? ( >=x11-libs/motif-2.3:0= )"
 DEPEND="${RDEPEND}"
 
 S=${WORKDIR}/${MY_P}
+PATCHES=(
+   "${FILESDIR}"/${PV}-Makefile.patch
+   "${FILESDIR}"/${PV}-overflow.patch
+)
 
-src_prepare() {
-   epatch \
-   "${FILESDIR}"/${PV}-Makefile.patch \
-   "${FILESDIR}"/${PV}-overflow.patch
-   sed  \
+src_configure() {
+   tc-export CC
+
+   sed \
-e 's:cc:$(CC):g' \
-e "s:GENTOOLIBDIR:$(get_libdir):g" \
-   "${S}"/Makefile.linux > Makefile || die
+   Makefile.linux > Makefile || die
 }
 
 src_compile() {
-   local mytarget
-
-   if use X; then
-   mytarget="${PN}"
-   else
-   mytarget="nogui"
-   fi
-
-   emake CC="$(tc-getCC)" ${mytarget} || die
+   emake $(usex X ${PN} nogui)
 }
 
 src_install() {
-   dobin "${S}"/prekin || die
+   dobin prekin
 }

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/

2017-12-01 Thread David Seifert 
commit: bff5023b358935fac57d2cd6f43e575a867af3d6
Author: David Seifert  gentoo  org>
AuthorDate: Fri Dec  1 22:42:35 2017 +
Commit: David Seifert  gentoo  org>
CommitDate: Fri Dec  1 23:00:45 2017 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bff5023b

sci-chemistry/prekin: [QA] Fix DESCRIPTION.toolong

 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index 7f90ace13b9..8bea9cc5230 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -7,7 +7,7 @@ inherit toolchain-funcs eutils multilib
 
 MY_P=${PN}.${PV}
 
-DESCRIPTION="Prepares molecular kinemages (input files for Mage & KiNG) from 
PDB-format coordinate files"
+DESCRIPTION="Prepares molecular kinemages from PDB-format coordinate files"
 HOMEPAGE="http://kinemage.biochem.duke.edu/software/prekin.php";
 
SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${MY_P}.src.tgz";

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/

2018-04-17 Thread David Seifert 
commit: 7c47eb5a61bc4cd600ed38c5b6c351c0c10c3aa4
Author: David Seifert  gentoo  org>
AuthorDate: Tue Apr 17 09:48:46 2018 +
Commit: David Seifert  gentoo  org>
CommitDate: Tue Apr 17 20:25:19 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7c47eb5a

sci-chemistry/prekin: Port to EAPI 6

Package-Manager: Portage-2.3.29, Repoman-2.3.9

 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild | 38 ++-
 1 file changed, 17 insertions(+), 21 deletions(-)

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index 8bea9cc5230..db0c34eca49 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI="2"
+EAPI=6
 
-inherit toolchain-funcs eutils multilib
+inherit toolchain-funcs
 
 MY_P=${PN}.${PV}
 
@@ -16,37 +16,33 @@ SLOT="0"
 KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
 IUSE="X"
 
-RDEPEND="x11-libs/libXext
+RDEPEND="
+   x11-libs/libXext
x11-libs/libXmu
x11-libs/libX11
x11-libs/libXt
-   X? ( >=x11-libs/motif-2.3:0 )"
+   X? ( >=x11-libs/motif-2.3:0= )"
 DEPEND="${RDEPEND}"
 
 S=${WORKDIR}/${MY_P}
+PATCHES=(
+   "${FILESDIR}"/${PV}-Makefile.patch
+   "${FILESDIR}"/${PV}-overflow.patch
+)
 
-src_prepare() {
-   epatch \
-   "${FILESDIR}"/${PV}-Makefile.patch \
-   "${FILESDIR}"/${PV}-overflow.patch
-   sed  \
+src_configure() {
+   tc-export CC
+
+   sed \
-e 's:cc:$(CC):g' \
-e "s:GENTOOLIBDIR:$(get_libdir):g" \
-   "${S}"/Makefile.linux > Makefile || die
+   Makefile.linux > Makefile || die
 }
 
 src_compile() {
-   local mytarget
-
-   if use X; then
-   mytarget="${PN}"
-   else
-   mytarget="nogui"
-   fi
-
-   emake CC="$(tc-getCC)" ${mytarget} || die
+   emake $(usex X ${PN} nogui)
 }
 
 src_install() {
-   dobin "${S}"/prekin || die
+   dobin prekin
 }

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/

2017-12-01 Thread David Seifert 
commit: bff5023b358935fac57d2cd6f43e575a867af3d6
Author: David Seifert  gentoo  org>
AuthorDate: Fri Dec  1 22:42:35 2017 +
Commit: David Seifert  gentoo  org>
CommitDate: Fri Dec  1 23:00:45 2017 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bff5023b

sci-chemistry/prekin: [QA] Fix DESCRIPTION.toolong

 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index 7f90ace13b9..8bea9cc5230 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -7,7 +7,7 @@ inherit toolchain-funcs eutils multilib
 
 MY_P=${PN}.${PV}
 
-DESCRIPTION="Prepares molecular kinemages (input files for Mage & KiNG) from 
PDB-format coordinate files"
+DESCRIPTION="Prepares molecular kinemages from PDB-format coordinate files"
 HOMEPAGE="http://kinemage.biochem.duke.edu/software/prekin.php";
 
SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${MY_P}.src.tgz";

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/

2018-04-17 Thread David Seifert 
commit: 7c47eb5a61bc4cd600ed38c5b6c351c0c10c3aa4
Author: David Seifert  gentoo  org>
AuthorDate: Tue Apr 17 09:48:46 2018 +
Commit: David Seifert  gentoo  org>
CommitDate: Tue Apr 17 20:25:19 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7c47eb5a

sci-chemistry/prekin: Port to EAPI 6

Package-Manager: Portage-2.3.29, Repoman-2.3.9

 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild | 38 ++-
 1 file changed, 17 insertions(+), 21 deletions(-)

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index 8bea9cc5230..db0c34eca49 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI="2"
+EAPI=6
 
-inherit toolchain-funcs eutils multilib
+inherit toolchain-funcs
 
 MY_P=${PN}.${PV}
 
@@ -16,37 +16,33 @@ SLOT="0"
 KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
 IUSE="X"
 
-RDEPEND="x11-libs/libXext
+RDEPEND="
+   x11-libs/libXext
x11-libs/libXmu
x11-libs/libX11
x11-libs/libXt
-   X? ( >=x11-libs/motif-2.3:0 )"
+   X? ( >=x11-libs/motif-2.3:0= )"
 DEPEND="${RDEPEND}"
 
 S=${WORKDIR}/${MY_P}
+PATCHES=(
+   "${FILESDIR}"/${PV}-Makefile.patch
+   "${FILESDIR}"/${PV}-overflow.patch
+)
 
-src_prepare() {
-   epatch \
-   "${FILESDIR}"/${PV}-Makefile.patch \
-   "${FILESDIR}"/${PV}-overflow.patch
-   sed  \
+src_configure() {
+   tc-export CC
+
+   sed \
-e 's:cc:$(CC):g' \
-e "s:GENTOOLIBDIR:$(get_libdir):g" \
-   "${S}"/Makefile.linux > Makefile || die
+   Makefile.linux > Makefile || die
 }
 
 src_compile() {
-   local mytarget
-
-   if use X; then
-   mytarget="${PN}"
-   else
-   mytarget="nogui"
-   fi
-
-   emake CC="$(tc-getCC)" ${mytarget} || die
+   emake $(usex X ${PN} nogui)
 }
 
 src_install() {
-   dobin "${S}"/prekin || die
+   dobin prekin
 }

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/

2017-12-01 Thread David Seifert 
commit: bff5023b358935fac57d2cd6f43e575a867af3d6
Author: David Seifert  gentoo  org>
AuthorDate: Fri Dec  1 22:42:35 2017 +
Commit: David Seifert  gentoo  org>
CommitDate: Fri Dec  1 23:00:45 2017 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bff5023b

sci-chemistry/prekin: [QA] Fix DESCRIPTION.toolong

 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index 7f90ace13b9..8bea9cc5230 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -7,7 +7,7 @@ inherit toolchain-funcs eutils multilib
 
 MY_P=${PN}.${PV}
 
-DESCRIPTION="Prepares molecular kinemages (input files for Mage & KiNG) from 
PDB-format coordinate files"
+DESCRIPTION="Prepares molecular kinemages from PDB-format coordinate files"
 HOMEPAGE="http://kinemage.biochem.duke.edu/software/prekin.php";
 
SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${MY_P}.src.tgz";

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/

2018-04-17 Thread David Seifert 
commit: 7c47eb5a61bc4cd600ed38c5b6c351c0c10c3aa4
Author: David Seifert  gentoo  org>
AuthorDate: Tue Apr 17 09:48:46 2018 +
Commit: David Seifert  gentoo  org>
CommitDate: Tue Apr 17 20:25:19 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7c47eb5a

sci-chemistry/prekin: Port to EAPI 6

Package-Manager: Portage-2.3.29, Repoman-2.3.9

 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild | 38 ++-
 1 file changed, 17 insertions(+), 21 deletions(-)

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index 8bea9cc5230..db0c34eca49 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI="2"
+EAPI=6
 
-inherit toolchain-funcs eutils multilib
+inherit toolchain-funcs
 
 MY_P=${PN}.${PV}
 
@@ -16,37 +16,33 @@ SLOT="0"
 KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
 IUSE="X"
 
-RDEPEND="x11-libs/libXext
+RDEPEND="
+   x11-libs/libXext
x11-libs/libXmu
x11-libs/libX11
x11-libs/libXt
-   X? ( >=x11-libs/motif-2.3:0 )"
+   X? ( >=x11-libs/motif-2.3:0= )"
 DEPEND="${RDEPEND}"
 
 S=${WORKDIR}/${MY_P}
+PATCHES=(
+   "${FILESDIR}"/${PV}-Makefile.patch
+   "${FILESDIR}"/${PV}-overflow.patch
+)
 
-src_prepare() {
-   epatch \
-   "${FILESDIR}"/${PV}-Makefile.patch \
-   "${FILESDIR}"/${PV}-overflow.patch
-   sed  \
+src_configure() {
+   tc-export CC
+
+   sed \
-e 's:cc:$(CC):g' \
-e "s:GENTOOLIBDIR:$(get_libdir):g" \
-   "${S}"/Makefile.linux > Makefile || die
+   Makefile.linux > Makefile || die
 }
 
 src_compile() {
-   local mytarget
-
-   if use X; then
-   mytarget="${PN}"
-   else
-   mytarget="nogui"
-   fi
-
-   emake CC="$(tc-getCC)" ${mytarget} || die
+   emake $(usex X ${PN} nogui)
 }
 
 src_install() {
-   dobin "${S}"/prekin || die
+   dobin prekin
 }

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/files/, sci-chemistry/prekin/

2021-02-14 Thread David Seifert 
commit: 783ac39b1124347dc84c558dffb8e8b3575a4f49
Author: Jakov Smolic  sartura  hr>
AuthorDate: Sun Feb 14 10:33:06 2021 +
Commit: David Seifert  gentoo  org>
CommitDate: Sun Feb 14 10:33:06 2021 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=783ac39b

sci-chemistry/prekin: Port to EAPI 7

Closes: https://bugs.gentoo.org/707310
Signed-off-by: Jakov Smolic  sartura.hr>
Signed-off-by: David Seifert  gentoo.org>

 .../prekin/files/6.51.081122-Makefile.patch|  2 --
 .../prekin/files/6.51.081122-overflow.patch|  2 --
 .../files/prekin-6.51.081122-fno-common.patch  | 34 ++
 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild  |  9 +++---
 4 files changed, 39 insertions(+), 8 deletions(-)

diff --git a/sci-chemistry/prekin/files/6.51.081122-Makefile.patch 
b/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
index 5fd9d00d9b0..b562f27e51d 100644
--- a/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
+++ b/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
@@ -1,5 +1,3 @@
-diff --git a/Makefile.linux b/Makefile.linux
-index 65a021a..3daacd8 100755
 --- a/Makefile.linux
 +++ b/Makefile.linux
 @@ -1,15 +1,15 @@

diff --git a/sci-chemistry/prekin/files/6.51.081122-overflow.patch 
b/sci-chemistry/prekin/files/6.51.081122-overflow.patch
index 27bc01d61a5..1c6ded31431 100644
--- a/sci-chemistry/prekin/files/6.51.081122-overflow.patch
+++ b/sci-chemistry/prekin/files/6.51.081122-overflow.patch
@@ -1,5 +1,3 @@
-diff --git a/PKIN.h b/PKIN.h
-index 6cb6670..c9c6b89 100755
 --- a/PKIN.h
 +++ b/PKIN.h
 @@ -533,8 +533,8 @@ EXTERN float xnext,ynext,znext,onext,Bnext,Uvalnext;

diff --git a/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch 
b/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch
new file mode 100644
index 000..207d3015202
--- /dev/null
+++ b/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch
@@ -0,0 +1,34 @@
+https://bugs.gentoo.org/707310
+--- a/PKININIT.c
 b/PKININIT.c
+@@ -65,6 +65,8 @@ void writeversiontooutput(void); /*041011*/
+ void writechangestooutput(void); /*040215*/
+ void writecmdhelptooutput(void); /*040425*/
+ 
++extern int Lribbonnew;
++
+ static char* prekinchanges[] =
+ {"\r"
+ ,"020514 Cbeta:Superpos,NB:Prekin,IOmage\r"
+--- a/PKINRIBB.c
 b/PKINRIBB.c
+@@ -6,6 +6,8 @@
+ #define   PKINRIBB
+ #include "PKINRIBB.h"
+ #undefPKINRIBB
++
++extern int Lribbonnew;
+  
+ /*{{{--NOTE--  version, etc. */
+ /*051025  for now, just work with one model, and let prekin's 
levels==sections*/
+--- a/PKINRIBB.h
 b/PKINRIBB.h
+@@ -5,7 +5,7 @@
+ #define PKINRIBB extern
+ #endif
+ 
+-PKINRIBBint   Lribbonnew;  /*051025 new ribbon structures: PKINRIBB*/
++extern int   Lribbonnew;  /*051025 new ribbon structures: PKINRIBB*/
+ 
+ #define CORDER 4  /*order of the B-spline defined here*/
+ 

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index db0c34eca49..d6f5e98ced6 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -6,7 +6,6 @@ EAPI=6
 inherit toolchain-funcs
 
 MY_P=${PN}.${PV}
-
 DESCRIPTION="Prepares molecular kinemages from PDB-format coordinate files"
 HOMEPAGE="http://kinemage.biochem.duke.edu/software/prekin.php";
 
SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${MY_P}.src.tgz";
@@ -19,15 +18,17 @@ IUSE="X"
 RDEPEND="
x11-libs/libXext
x11-libs/libXmu
-   x11-libs/libX11
x11-libs/libXt
+   x11-libs/libX11
X? ( >=x11-libs/motif-2.3:0= )"
 DEPEND="${RDEPEND}"
 
-S=${WORKDIR}/${MY_P}
+S="${WORKDIR}/${MY_P}"
+
 PATCHES=(
"${FILESDIR}"/${PV}-Makefile.patch
"${FILESDIR}"/${PV}-overflow.patch
+   "${FILESDIR}"/${P}-fno-common.patch
 )
 
 src_configure() {

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/files/, sci-chemistry/prekin/

2021-02-14 Thread David Seifert 
commit: 783ac39b1124347dc84c558dffb8e8b3575a4f49
Author: Jakov Smolic  sartura  hr>
AuthorDate: Sun Feb 14 10:33:06 2021 +
Commit: David Seifert  gentoo  org>
CommitDate: Sun Feb 14 10:33:06 2021 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=783ac39b

sci-chemistry/prekin: Port to EAPI 7

Closes: https://bugs.gentoo.org/707310
Signed-off-by: Jakov Smolic  sartura.hr>
Signed-off-by: David Seifert  gentoo.org>

 .../prekin/files/6.51.081122-Makefile.patch|  2 --
 .../prekin/files/6.51.081122-overflow.patch|  2 --
 .../files/prekin-6.51.081122-fno-common.patch  | 34 ++
 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild  |  9 +++---
 4 files changed, 39 insertions(+), 8 deletions(-)

diff --git a/sci-chemistry/prekin/files/6.51.081122-Makefile.patch 
b/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
index 5fd9d00d9b0..b562f27e51d 100644
--- a/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
+++ b/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
@@ -1,5 +1,3 @@
-diff --git a/Makefile.linux b/Makefile.linux
-index 65a021a..3daacd8 100755
 --- a/Makefile.linux
 +++ b/Makefile.linux
 @@ -1,15 +1,15 @@

diff --git a/sci-chemistry/prekin/files/6.51.081122-overflow.patch 
b/sci-chemistry/prekin/files/6.51.081122-overflow.patch
index 27bc01d61a5..1c6ded31431 100644
--- a/sci-chemistry/prekin/files/6.51.081122-overflow.patch
+++ b/sci-chemistry/prekin/files/6.51.081122-overflow.patch
@@ -1,5 +1,3 @@
-diff --git a/PKIN.h b/PKIN.h
-index 6cb6670..c9c6b89 100755
 --- a/PKIN.h
 +++ b/PKIN.h
 @@ -533,8 +533,8 @@ EXTERN float xnext,ynext,znext,onext,Bnext,Uvalnext;

diff --git a/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch 
b/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch
new file mode 100644
index 000..207d3015202
--- /dev/null
+++ b/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch
@@ -0,0 +1,34 @@
+https://bugs.gentoo.org/707310
+--- a/PKININIT.c
 b/PKININIT.c
+@@ -65,6 +65,8 @@ void writeversiontooutput(void); /*041011*/
+ void writechangestooutput(void); /*040215*/
+ void writecmdhelptooutput(void); /*040425*/
+ 
++extern int Lribbonnew;
++
+ static char* prekinchanges[] =
+ {"\r"
+ ,"020514 Cbeta:Superpos,NB:Prekin,IOmage\r"
+--- a/PKINRIBB.c
 b/PKINRIBB.c
+@@ -6,6 +6,8 @@
+ #define   PKINRIBB
+ #include "PKINRIBB.h"
+ #undefPKINRIBB
++
++extern int Lribbonnew;
+  
+ /*{{{--NOTE--  version, etc. */
+ /*051025  for now, just work with one model, and let prekin's 
levels==sections*/
+--- a/PKINRIBB.h
 b/PKINRIBB.h
+@@ -5,7 +5,7 @@
+ #define PKINRIBB extern
+ #endif
+ 
+-PKINRIBBint   Lribbonnew;  /*051025 new ribbon structures: PKINRIBB*/
++extern int   Lribbonnew;  /*051025 new ribbon structures: PKINRIBB*/
+ 
+ #define CORDER 4  /*order of the B-spline defined here*/
+ 

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index db0c34eca49..d6f5e98ced6 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -6,7 +6,6 @@ EAPI=6
 inherit toolchain-funcs
 
 MY_P=${PN}.${PV}
-
 DESCRIPTION="Prepares molecular kinemages from PDB-format coordinate files"
 HOMEPAGE="http://kinemage.biochem.duke.edu/software/prekin.php";
 
SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${MY_P}.src.tgz";
@@ -19,15 +18,17 @@ IUSE="X"
 RDEPEND="
x11-libs/libXext
x11-libs/libXmu
-   x11-libs/libX11
x11-libs/libXt
+   x11-libs/libX11
X? ( >=x11-libs/motif-2.3:0= )"
 DEPEND="${RDEPEND}"
 
-S=${WORKDIR}/${MY_P}
+S="${WORKDIR}/${MY_P}"
+
 PATCHES=(
"${FILESDIR}"/${PV}-Makefile.patch
"${FILESDIR}"/${PV}-overflow.patch
+   "${FILESDIR}"/${P}-fno-common.patch
 )
 
 src_configure() {

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/files/, sci-chemistry/prekin/

2021-02-14 Thread David Seifert 
commit: 783ac39b1124347dc84c558dffb8e8b3575a4f49
Author: Jakov Smolic  sartura  hr>
AuthorDate: Sun Feb 14 10:33:06 2021 +
Commit: David Seifert  gentoo  org>
CommitDate: Sun Feb 14 10:33:06 2021 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=783ac39b

sci-chemistry/prekin: Port to EAPI 7

Closes: https://bugs.gentoo.org/707310
Signed-off-by: Jakov Smolic  sartura.hr>
Signed-off-by: David Seifert  gentoo.org>

 .../prekin/files/6.51.081122-Makefile.patch|  2 --
 .../prekin/files/6.51.081122-overflow.patch|  2 --
 .../files/prekin-6.51.081122-fno-common.patch  | 34 ++
 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild  |  9 +++---
 4 files changed, 39 insertions(+), 8 deletions(-)

diff --git a/sci-chemistry/prekin/files/6.51.081122-Makefile.patch 
b/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
index 5fd9d00d9b0..b562f27e51d 100644
--- a/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
+++ b/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
@@ -1,5 +1,3 @@
-diff --git a/Makefile.linux b/Makefile.linux
-index 65a021a..3daacd8 100755
 --- a/Makefile.linux
 +++ b/Makefile.linux
 @@ -1,15 +1,15 @@

diff --git a/sci-chemistry/prekin/files/6.51.081122-overflow.patch 
b/sci-chemistry/prekin/files/6.51.081122-overflow.patch
index 27bc01d61a5..1c6ded31431 100644
--- a/sci-chemistry/prekin/files/6.51.081122-overflow.patch
+++ b/sci-chemistry/prekin/files/6.51.081122-overflow.patch
@@ -1,5 +1,3 @@
-diff --git a/PKIN.h b/PKIN.h
-index 6cb6670..c9c6b89 100755
 --- a/PKIN.h
 +++ b/PKIN.h
 @@ -533,8 +533,8 @@ EXTERN float xnext,ynext,znext,onext,Bnext,Uvalnext;

diff --git a/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch 
b/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch
new file mode 100644
index 000..207d3015202
--- /dev/null
+++ b/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch
@@ -0,0 +1,34 @@
+https://bugs.gentoo.org/707310
+--- a/PKININIT.c
 b/PKININIT.c
+@@ -65,6 +65,8 @@ void writeversiontooutput(void); /*041011*/
+ void writechangestooutput(void); /*040215*/
+ void writecmdhelptooutput(void); /*040425*/
+ 
++extern int Lribbonnew;
++
+ static char* prekinchanges[] =
+ {"\r"
+ ,"020514 Cbeta:Superpos,NB:Prekin,IOmage\r"
+--- a/PKINRIBB.c
 b/PKINRIBB.c
+@@ -6,6 +6,8 @@
+ #define   PKINRIBB
+ #include "PKINRIBB.h"
+ #undefPKINRIBB
++
++extern int Lribbonnew;
+  
+ /*{{{--NOTE--  version, etc. */
+ /*051025  for now, just work with one model, and let prekin's 
levels==sections*/
+--- a/PKINRIBB.h
 b/PKINRIBB.h
+@@ -5,7 +5,7 @@
+ #define PKINRIBB extern
+ #endif
+ 
+-PKINRIBBint   Lribbonnew;  /*051025 new ribbon structures: PKINRIBB*/
++extern int   Lribbonnew;  /*051025 new ribbon structures: PKINRIBB*/
+ 
+ #define CORDER 4  /*order of the B-spline defined here*/
+ 

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index db0c34eca49..d6f5e98ced6 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -6,7 +6,6 @@ EAPI=6
 inherit toolchain-funcs
 
 MY_P=${PN}.${PV}
-
 DESCRIPTION="Prepares molecular kinemages from PDB-format coordinate files"
 HOMEPAGE="http://kinemage.biochem.duke.edu/software/prekin.php";
 
SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${MY_P}.src.tgz";
@@ -19,15 +18,17 @@ IUSE="X"
 RDEPEND="
x11-libs/libXext
x11-libs/libXmu
-   x11-libs/libX11
x11-libs/libXt
+   x11-libs/libX11
X? ( >=x11-libs/motif-2.3:0= )"
 DEPEND="${RDEPEND}"
 
-S=${WORKDIR}/${MY_P}
+S="${WORKDIR}/${MY_P}"
+
 PATCHES=(
"${FILESDIR}"/${PV}-Makefile.patch
"${FILESDIR}"/${PV}-overflow.patch
+   "${FILESDIR}"/${P}-fno-common.patch
 )
 
 src_configure() {

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/files/, sci-chemistry/prekin/

2021-02-14 Thread David Seifert 
commit: 783ac39b1124347dc84c558dffb8e8b3575a4f49
Author: Jakov Smolic  sartura  hr>
AuthorDate: Sun Feb 14 10:33:06 2021 +
Commit: David Seifert  gentoo  org>
CommitDate: Sun Feb 14 10:33:06 2021 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=783ac39b

sci-chemistry/prekin: Port to EAPI 7

Closes: https://bugs.gentoo.org/707310
Signed-off-by: Jakov Smolic  sartura.hr>
Signed-off-by: David Seifert  gentoo.org>

 .../prekin/files/6.51.081122-Makefile.patch|  2 --
 .../prekin/files/6.51.081122-overflow.patch|  2 --
 .../files/prekin-6.51.081122-fno-common.patch  | 34 ++
 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild  |  9 +++---
 4 files changed, 39 insertions(+), 8 deletions(-)

diff --git a/sci-chemistry/prekin/files/6.51.081122-Makefile.patch 
b/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
index 5fd9d00d9b0..b562f27e51d 100644
--- a/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
+++ b/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
@@ -1,5 +1,3 @@
-diff --git a/Makefile.linux b/Makefile.linux
-index 65a021a..3daacd8 100755
 --- a/Makefile.linux
 +++ b/Makefile.linux
 @@ -1,15 +1,15 @@

diff --git a/sci-chemistry/prekin/files/6.51.081122-overflow.patch 
b/sci-chemistry/prekin/files/6.51.081122-overflow.patch
index 27bc01d61a5..1c6ded31431 100644
--- a/sci-chemistry/prekin/files/6.51.081122-overflow.patch
+++ b/sci-chemistry/prekin/files/6.51.081122-overflow.patch
@@ -1,5 +1,3 @@
-diff --git a/PKIN.h b/PKIN.h
-index 6cb6670..c9c6b89 100755
 --- a/PKIN.h
 +++ b/PKIN.h
 @@ -533,8 +533,8 @@ EXTERN float xnext,ynext,znext,onext,Bnext,Uvalnext;

diff --git a/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch 
b/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch
new file mode 100644
index 000..207d3015202
--- /dev/null
+++ b/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch
@@ -0,0 +1,34 @@
+https://bugs.gentoo.org/707310
+--- a/PKININIT.c
 b/PKININIT.c
+@@ -65,6 +65,8 @@ void writeversiontooutput(void); /*041011*/
+ void writechangestooutput(void); /*040215*/
+ void writecmdhelptooutput(void); /*040425*/
+ 
++extern int Lribbonnew;
++
+ static char* prekinchanges[] =
+ {"\r"
+ ,"020514 Cbeta:Superpos,NB:Prekin,IOmage\r"
+--- a/PKINRIBB.c
 b/PKINRIBB.c
+@@ -6,6 +6,8 @@
+ #define   PKINRIBB
+ #include "PKINRIBB.h"
+ #undefPKINRIBB
++
++extern int Lribbonnew;
+  
+ /*{{{--NOTE--  version, etc. */
+ /*051025  for now, just work with one model, and let prekin's 
levels==sections*/
+--- a/PKINRIBB.h
 b/PKINRIBB.h
+@@ -5,7 +5,7 @@
+ #define PKINRIBB extern
+ #endif
+ 
+-PKINRIBBint   Lribbonnew;  /*051025 new ribbon structures: PKINRIBB*/
++extern int   Lribbonnew;  /*051025 new ribbon structures: PKINRIBB*/
+ 
+ #define CORDER 4  /*order of the B-spline defined here*/
+ 

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index db0c34eca49..d6f5e98ced6 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -6,7 +6,6 @@ EAPI=6
 inherit toolchain-funcs
 
 MY_P=${PN}.${PV}
-
 DESCRIPTION="Prepares molecular kinemages from PDB-format coordinate files"
 HOMEPAGE="http://kinemage.biochem.duke.edu/software/prekin.php";
 
SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${MY_P}.src.tgz";
@@ -19,15 +18,17 @@ IUSE="X"
 RDEPEND="
x11-libs/libXext
x11-libs/libXmu
-   x11-libs/libX11
x11-libs/libXt
+   x11-libs/libX11
X? ( >=x11-libs/motif-2.3:0= )"
 DEPEND="${RDEPEND}"
 
-S=${WORKDIR}/${MY_P}
+S="${WORKDIR}/${MY_P}"
+
 PATCHES=(
"${FILESDIR}"/${PV}-Makefile.patch
"${FILESDIR}"/${PV}-overflow.patch
+   "${FILESDIR}"/${P}-fno-common.patch
 )
 
 src_configure() {

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/files/, sci-chemistry/prekin/

2021-02-14 Thread David Seifert 
commit: 783ac39b1124347dc84c558dffb8e8b3575a4f49
Author: Jakov Smolic  sartura  hr>
AuthorDate: Sun Feb 14 10:33:06 2021 +
Commit: David Seifert  gentoo  org>
CommitDate: Sun Feb 14 10:33:06 2021 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=783ac39b

sci-chemistry/prekin: Port to EAPI 7

Closes: https://bugs.gentoo.org/707310
Signed-off-by: Jakov Smolic  sartura.hr>
Signed-off-by: David Seifert  gentoo.org>

 .../prekin/files/6.51.081122-Makefile.patch|  2 --
 .../prekin/files/6.51.081122-overflow.patch|  2 --
 .../files/prekin-6.51.081122-fno-common.patch  | 34 ++
 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild  |  9 +++---
 4 files changed, 39 insertions(+), 8 deletions(-)

diff --git a/sci-chemistry/prekin/files/6.51.081122-Makefile.patch 
b/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
index 5fd9d00d9b0..b562f27e51d 100644
--- a/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
+++ b/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
@@ -1,5 +1,3 @@
-diff --git a/Makefile.linux b/Makefile.linux
-index 65a021a..3daacd8 100755
 --- a/Makefile.linux
 +++ b/Makefile.linux
 @@ -1,15 +1,15 @@

diff --git a/sci-chemistry/prekin/files/6.51.081122-overflow.patch 
b/sci-chemistry/prekin/files/6.51.081122-overflow.patch
index 27bc01d61a5..1c6ded31431 100644
--- a/sci-chemistry/prekin/files/6.51.081122-overflow.patch
+++ b/sci-chemistry/prekin/files/6.51.081122-overflow.patch
@@ -1,5 +1,3 @@
-diff --git a/PKIN.h b/PKIN.h
-index 6cb6670..c9c6b89 100755
 --- a/PKIN.h
 +++ b/PKIN.h
 @@ -533,8 +533,8 @@ EXTERN float xnext,ynext,znext,onext,Bnext,Uvalnext;

diff --git a/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch 
b/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch
new file mode 100644
index 000..207d3015202
--- /dev/null
+++ b/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch
@@ -0,0 +1,34 @@
+https://bugs.gentoo.org/707310
+--- a/PKININIT.c
 b/PKININIT.c
+@@ -65,6 +65,8 @@ void writeversiontooutput(void); /*041011*/
+ void writechangestooutput(void); /*040215*/
+ void writecmdhelptooutput(void); /*040425*/
+ 
++extern int Lribbonnew;
++
+ static char* prekinchanges[] =
+ {"\r"
+ ,"020514 Cbeta:Superpos,NB:Prekin,IOmage\r"
+--- a/PKINRIBB.c
 b/PKINRIBB.c
+@@ -6,6 +6,8 @@
+ #define   PKINRIBB
+ #include "PKINRIBB.h"
+ #undefPKINRIBB
++
++extern int Lribbonnew;
+  
+ /*{{{--NOTE--  version, etc. */
+ /*051025  for now, just work with one model, and let prekin's 
levels==sections*/
+--- a/PKINRIBB.h
 b/PKINRIBB.h
+@@ -5,7 +5,7 @@
+ #define PKINRIBB extern
+ #endif
+ 
+-PKINRIBBint   Lribbonnew;  /*051025 new ribbon structures: PKINRIBB*/
++extern int   Lribbonnew;  /*051025 new ribbon structures: PKINRIBB*/
+ 
+ #define CORDER 4  /*order of the B-spline defined here*/
+ 

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index db0c34eca49..d6f5e98ced6 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -6,7 +6,6 @@ EAPI=6
 inherit toolchain-funcs
 
 MY_P=${PN}.${PV}
-
 DESCRIPTION="Prepares molecular kinemages from PDB-format coordinate files"
 HOMEPAGE="http://kinemage.biochem.duke.edu/software/prekin.php";
 
SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${MY_P}.src.tgz";
@@ -19,15 +18,17 @@ IUSE="X"
 RDEPEND="
x11-libs/libXext
x11-libs/libXmu
-   x11-libs/libX11
x11-libs/libXt
+   x11-libs/libX11
X? ( >=x11-libs/motif-2.3:0= )"
 DEPEND="${RDEPEND}"
 
-S=${WORKDIR}/${MY_P}
+S="${WORKDIR}/${MY_P}"
+
 PATCHES=(
"${FILESDIR}"/${PV}-Makefile.patch
"${FILESDIR}"/${PV}-overflow.patch
+   "${FILESDIR}"/${P}-fno-common.patch
 )
 
 src_configure() {

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/files/, sci-chemistry/prekin/

2021-02-14 Thread David Seifert 
commit: 783ac39b1124347dc84c558dffb8e8b3575a4f49
Author: Jakov Smolic  sartura  hr>
AuthorDate: Sun Feb 14 10:33:06 2021 +
Commit: David Seifert  gentoo  org>
CommitDate: Sun Feb 14 10:33:06 2021 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=783ac39b

sci-chemistry/prekin: Port to EAPI 7

Closes: https://bugs.gentoo.org/707310
Signed-off-by: Jakov Smolic  sartura.hr>
Signed-off-by: David Seifert  gentoo.org>

 .../prekin/files/6.51.081122-Makefile.patch|  2 --
 .../prekin/files/6.51.081122-overflow.patch|  2 --
 .../files/prekin-6.51.081122-fno-common.patch  | 34 ++
 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild  |  9 +++---
 4 files changed, 39 insertions(+), 8 deletions(-)

diff --git a/sci-chemistry/prekin/files/6.51.081122-Makefile.patch 
b/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
index 5fd9d00d9b0..b562f27e51d 100644
--- a/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
+++ b/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
@@ -1,5 +1,3 @@
-diff --git a/Makefile.linux b/Makefile.linux
-index 65a021a..3daacd8 100755
 --- a/Makefile.linux
 +++ b/Makefile.linux
 @@ -1,15 +1,15 @@

diff --git a/sci-chemistry/prekin/files/6.51.081122-overflow.patch 
b/sci-chemistry/prekin/files/6.51.081122-overflow.patch
index 27bc01d61a5..1c6ded31431 100644
--- a/sci-chemistry/prekin/files/6.51.081122-overflow.patch
+++ b/sci-chemistry/prekin/files/6.51.081122-overflow.patch
@@ -1,5 +1,3 @@
-diff --git a/PKIN.h b/PKIN.h
-index 6cb6670..c9c6b89 100755
 --- a/PKIN.h
 +++ b/PKIN.h
 @@ -533,8 +533,8 @@ EXTERN float xnext,ynext,znext,onext,Bnext,Uvalnext;

diff --git a/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch 
b/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch
new file mode 100644
index 000..207d3015202
--- /dev/null
+++ b/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch
@@ -0,0 +1,34 @@
+https://bugs.gentoo.org/707310
+--- a/PKININIT.c
 b/PKININIT.c
+@@ -65,6 +65,8 @@ void writeversiontooutput(void); /*041011*/
+ void writechangestooutput(void); /*040215*/
+ void writecmdhelptooutput(void); /*040425*/
+ 
++extern int Lribbonnew;
++
+ static char* prekinchanges[] =
+ {"\r"
+ ,"020514 Cbeta:Superpos,NB:Prekin,IOmage\r"
+--- a/PKINRIBB.c
 b/PKINRIBB.c
+@@ -6,6 +6,8 @@
+ #define   PKINRIBB
+ #include "PKINRIBB.h"
+ #undefPKINRIBB
++
++extern int Lribbonnew;
+  
+ /*{{{--NOTE--  version, etc. */
+ /*051025  for now, just work with one model, and let prekin's 
levels==sections*/
+--- a/PKINRIBB.h
 b/PKINRIBB.h
+@@ -5,7 +5,7 @@
+ #define PKINRIBB extern
+ #endif
+ 
+-PKINRIBBint   Lribbonnew;  /*051025 new ribbon structures: PKINRIBB*/
++extern int   Lribbonnew;  /*051025 new ribbon structures: PKINRIBB*/
+ 
+ #define CORDER 4  /*order of the B-spline defined here*/
+ 

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index db0c34eca49..d6f5e98ced6 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -6,7 +6,6 @@ EAPI=6
 inherit toolchain-funcs
 
 MY_P=${PN}.${PV}
-
 DESCRIPTION="Prepares molecular kinemages from PDB-format coordinate files"
 HOMEPAGE="http://kinemage.biochem.duke.edu/software/prekin.php";
 
SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${MY_P}.src.tgz";
@@ -19,15 +18,17 @@ IUSE="X"
 RDEPEND="
x11-libs/libXext
x11-libs/libXmu
-   x11-libs/libX11
x11-libs/libXt
+   x11-libs/libX11
X? ( >=x11-libs/motif-2.3:0= )"
 DEPEND="${RDEPEND}"
 
-S=${WORKDIR}/${MY_P}
+S="${WORKDIR}/${MY_P}"
+
 PATCHES=(
"${FILESDIR}"/${PV}-Makefile.patch
"${FILESDIR}"/${PV}-overflow.patch
+   "${FILESDIR}"/${P}-fno-common.patch
 )
 
 src_configure() {

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/files/, sci-chemistry/prekin/

2021-02-14 Thread David Seifert 
commit: 783ac39b1124347dc84c558dffb8e8b3575a4f49
Author: Jakov Smolic  sartura  hr>
AuthorDate: Sun Feb 14 10:33:06 2021 +
Commit: David Seifert  gentoo  org>
CommitDate: Sun Feb 14 10:33:06 2021 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=783ac39b

sci-chemistry/prekin: Port to EAPI 7

Closes: https://bugs.gentoo.org/707310
Signed-off-by: Jakov Smolic  sartura.hr>
Signed-off-by: David Seifert  gentoo.org>

 .../prekin/files/6.51.081122-Makefile.patch|  2 --
 .../prekin/files/6.51.081122-overflow.patch|  2 --
 .../files/prekin-6.51.081122-fno-common.patch  | 34 ++
 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild  |  9 +++---
 4 files changed, 39 insertions(+), 8 deletions(-)

diff --git a/sci-chemistry/prekin/files/6.51.081122-Makefile.patch 
b/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
index 5fd9d00d9b0..b562f27e51d 100644
--- a/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
+++ b/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
@@ -1,5 +1,3 @@
-diff --git a/Makefile.linux b/Makefile.linux
-index 65a021a..3daacd8 100755
 --- a/Makefile.linux
 +++ b/Makefile.linux
 @@ -1,15 +1,15 @@

diff --git a/sci-chemistry/prekin/files/6.51.081122-overflow.patch 
b/sci-chemistry/prekin/files/6.51.081122-overflow.patch
index 27bc01d61a5..1c6ded31431 100644
--- a/sci-chemistry/prekin/files/6.51.081122-overflow.patch
+++ b/sci-chemistry/prekin/files/6.51.081122-overflow.patch
@@ -1,5 +1,3 @@
-diff --git a/PKIN.h b/PKIN.h
-index 6cb6670..c9c6b89 100755
 --- a/PKIN.h
 +++ b/PKIN.h
 @@ -533,8 +533,8 @@ EXTERN float xnext,ynext,znext,onext,Bnext,Uvalnext;

diff --git a/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch 
b/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch
new file mode 100644
index 000..207d3015202
--- /dev/null
+++ b/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch
@@ -0,0 +1,34 @@
+https://bugs.gentoo.org/707310
+--- a/PKININIT.c
 b/PKININIT.c
+@@ -65,6 +65,8 @@ void writeversiontooutput(void); /*041011*/
+ void writechangestooutput(void); /*040215*/
+ void writecmdhelptooutput(void); /*040425*/
+ 
++extern int Lribbonnew;
++
+ static char* prekinchanges[] =
+ {"\r"
+ ,"020514 Cbeta:Superpos,NB:Prekin,IOmage\r"
+--- a/PKINRIBB.c
 b/PKINRIBB.c
+@@ -6,6 +6,8 @@
+ #define   PKINRIBB
+ #include "PKINRIBB.h"
+ #undefPKINRIBB
++
++extern int Lribbonnew;
+  
+ /*{{{--NOTE--  version, etc. */
+ /*051025  for now, just work with one model, and let prekin's 
levels==sections*/
+--- a/PKINRIBB.h
 b/PKINRIBB.h
+@@ -5,7 +5,7 @@
+ #define PKINRIBB extern
+ #endif
+ 
+-PKINRIBBint   Lribbonnew;  /*051025 new ribbon structures: PKINRIBB*/
++extern int   Lribbonnew;  /*051025 new ribbon structures: PKINRIBB*/
+ 
+ #define CORDER 4  /*order of the B-spline defined here*/
+ 

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index db0c34eca49..d6f5e98ced6 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -6,7 +6,6 @@ EAPI=6
 inherit toolchain-funcs
 
 MY_P=${PN}.${PV}
-
 DESCRIPTION="Prepares molecular kinemages from PDB-format coordinate files"
 HOMEPAGE="http://kinemage.biochem.duke.edu/software/prekin.php";
 
SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${MY_P}.src.tgz";
@@ -19,15 +18,17 @@ IUSE="X"
 RDEPEND="
x11-libs/libXext
x11-libs/libXmu
-   x11-libs/libX11
x11-libs/libXt
+   x11-libs/libX11
X? ( >=x11-libs/motif-2.3:0= )"
 DEPEND="${RDEPEND}"
 
-S=${WORKDIR}/${MY_P}
+S="${WORKDIR}/${MY_P}"
+
 PATCHES=(
"${FILESDIR}"/${PV}-Makefile.patch
"${FILESDIR}"/${PV}-overflow.patch
+   "${FILESDIR}"/${P}-fno-common.patch
 )
 
 src_configure() {

[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/prekin/files/, sci-chemistry/prekin/

2021-02-14 Thread David Seifert 
commit: 783ac39b1124347dc84c558dffb8e8b3575a4f49
Author: Jakov Smolic  sartura  hr>
AuthorDate: Sun Feb 14 10:33:06 2021 +
Commit: David Seifert  gentoo  org>
CommitDate: Sun Feb 14 10:33:06 2021 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=783ac39b

sci-chemistry/prekin: Port to EAPI 7

Closes: https://bugs.gentoo.org/707310
Signed-off-by: Jakov Smolic  sartura.hr>
Signed-off-by: David Seifert  gentoo.org>

 .../prekin/files/6.51.081122-Makefile.patch|  2 --
 .../prekin/files/6.51.081122-overflow.patch|  2 --
 .../files/prekin-6.51.081122-fno-common.patch  | 34 ++
 sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild  |  9 +++---
 4 files changed, 39 insertions(+), 8 deletions(-)

diff --git a/sci-chemistry/prekin/files/6.51.081122-Makefile.patch 
b/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
index 5fd9d00d9b0..b562f27e51d 100644
--- a/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
+++ b/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
@@ -1,5 +1,3 @@
-diff --git a/Makefile.linux b/Makefile.linux
-index 65a021a..3daacd8 100755
 --- a/Makefile.linux
 +++ b/Makefile.linux
 @@ -1,15 +1,15 @@

diff --git a/sci-chemistry/prekin/files/6.51.081122-overflow.patch 
b/sci-chemistry/prekin/files/6.51.081122-overflow.patch
index 27bc01d61a5..1c6ded31431 100644
--- a/sci-chemistry/prekin/files/6.51.081122-overflow.patch
+++ b/sci-chemistry/prekin/files/6.51.081122-overflow.patch
@@ -1,5 +1,3 @@
-diff --git a/PKIN.h b/PKIN.h
-index 6cb6670..c9c6b89 100755
 --- a/PKIN.h
 +++ b/PKIN.h
 @@ -533,8 +533,8 @@ EXTERN float xnext,ynext,znext,onext,Bnext,Uvalnext;

diff --git a/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch 
b/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch
new file mode 100644
index 000..207d3015202
--- /dev/null
+++ b/sci-chemistry/prekin/files/prekin-6.51.081122-fno-common.patch
@@ -0,0 +1,34 @@
+https://bugs.gentoo.org/707310
+--- a/PKININIT.c
 b/PKININIT.c
+@@ -65,6 +65,8 @@ void writeversiontooutput(void); /*041011*/
+ void writechangestooutput(void); /*040215*/
+ void writecmdhelptooutput(void); /*040425*/
+ 
++extern int Lribbonnew;
++
+ static char* prekinchanges[] =
+ {"\r"
+ ,"020514 Cbeta:Superpos,NB:Prekin,IOmage\r"
+--- a/PKINRIBB.c
 b/PKINRIBB.c
+@@ -6,6 +6,8 @@
+ #define   PKINRIBB
+ #include "PKINRIBB.h"
+ #undefPKINRIBB
++
++extern int Lribbonnew;
+  
+ /*{{{--NOTE--  version, etc. */
+ /*051025  for now, just work with one model, and let prekin's 
levels==sections*/
+--- a/PKINRIBB.h
 b/PKINRIBB.h
+@@ -5,7 +5,7 @@
+ #define PKINRIBB extern
+ #endif
+ 
+-PKINRIBBint   Lribbonnew;  /*051025 new ribbon structures: PKINRIBB*/
++extern int   Lribbonnew;  /*051025 new ribbon structures: PKINRIBB*/
+ 
+ #define CORDER 4  /*order of the B-spline defined here*/
+ 

diff --git a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild 
b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
index db0c34eca49..d6f5e98ced6 100644
--- a/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
+++ b/sci-chemistry/prekin/prekin-6.51.081122-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -6,7 +6,6 @@ EAPI=6
 inherit toolchain-funcs
 
 MY_P=${PN}.${PV}
-
 DESCRIPTION="Prepares molecular kinemages from PDB-format coordinate files"
 HOMEPAGE="http://kinemage.biochem.duke.edu/software/prekin.php";
 
SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${MY_P}.src.tgz";
@@ -19,15 +18,17 @@ IUSE="X"
 RDEPEND="
x11-libs/libXext
x11-libs/libXmu
-   x11-libs/libX11
x11-libs/libXt
+   x11-libs/libX11
X? ( >=x11-libs/motif-2.3:0= )"
 DEPEND="${RDEPEND}"
 
-S=${WORKDIR}/${MY_P}
+S="${WORKDIR}/${MY_P}"
+
 PATCHES=(
"${FILESDIR}"/${PV}-Makefile.patch
"${FILESDIR}"/${PV}-overflow.patch
+   "${FILESDIR}"/${P}-fno-common.patch
 )
 
 src_configure() {