[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2024-05-18 Thread Pacho Ramos 
commit: d988f672cdc36bc71a85b089f2a0a24a2117118b
Author: Pacho Ramos  gentoo  org>
AuthorDate: Sat May 18 10:04:30 2024 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Sat May 18 10:06:40 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d988f672

sci-libs/libcifpp: drop 5.1.1, 5.1.2

Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/Manifest  |  4 
 sci-libs/libcifpp/libcifpp-5.1.1.ebuild | 38 -
 sci-libs/libcifpp/libcifpp-5.1.2.ebuild | 38 -
 3 files changed, 80 deletions(-)

diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index 840ee8c08659..811136e73542 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -1,7 +1,3 @@
-DIST libcifpp-5.1.1-components.cif.xz 58896016 BLAKE2B 
2bf61944fe6b11325df3c6c32eaabeb27b0f117eed362dd2eba51f623f4054d142ee84aeb04908322b7aebd30a1bd17da969eeda953f7423cca922006fe767d2
 SHA512 
d4103ac0b0ae5698dd4c17e452ea35871c4854827d3a2ee93f00b73b6f57b87ee2278b44ec0501f818dfc34284b4c19d4617ba3a98df9552da5ebedaa59c9622
-DIST libcifpp-5.1.1.tar.gz 2244833 BLAKE2B 
3a5feada63ee123dbed1ba776d0248569f46bbc2d39748db7d3cdfdfb66c89e08c54cdf5133182978e9ef4808c19adfc794ee895a95e882f0d5ff3d173e57311
 SHA512 
3e988d0e4f24174fb47274b0feaae5a8a793441efb9c8273b328f412fbd29ee082cd91e19f19008069ebfd3507c83f7945dc33fc015784727603f987091eaa5c
-DIST libcifpp-5.1.2-components.cif.xz 59092332 BLAKE2B 
3672ca8e9553be80822ca7d7398fd3b73b14b1bf375e63f3a7aef33c2ee92d837c9ca08b3a756d838c512ac5918a0537d70e9a422331fafaf0ff77ecf2134515
 SHA512 
b2d3507d339d8467b10d0a638a5b86e75ed73fb64fee854aefeb2f0ce999e6a99755af30483749ce75e8a4ce63536111bd2a7a5f698dfc86d1a2be3d243304ce
-DIST libcifpp-5.1.2.tar.gz 2244795 BLAKE2B 
7bec9f901c112fabf86c9ce691229f42dcf854be4c99bdf09dbe7dd0d0a3a7e92831cb2b72afa4debc1ce8b1a3a33e27cceda048adca6805802189e0ad50349c
 SHA512 
3adb801ed52b250f6779228288a2c2926c1c7d8d0eff0bb6ed610b4258de8537253d2ce95208e8682b2eb8d0c09ecb53b6269c24bdce907360d9478c6c8c3c1b
 DIST libcifpp-5.2.2-components.cif.xz 60754468 BLAKE2B 
899120c2d6749fb2da9be94de8665f4e961d08c101b33bce98b84bf126b32d43bb79c88da98fb926047522a6f138512dcc59df698f57a83b716e039d422308d4
 SHA512 
d861b83f8b363f2e64ccf073bae768d73f9f57ec2674bf30d43b05fc9a32d235e26c888faaa02b6276e0734632b237b6dd00d8b966dd63b4fcf6562ebcf41cfc
 DIST libcifpp-5.2.2.tar.gz 2277238 BLAKE2B 
a31af09bed7f1dbd6f610e104f0a8439742c863bc58b3680c058cb570a1f93fbcd6d23f29a372aafbb7166a4d86b2590cd24e092b1cc7af25bd09bbe437c93eb
 SHA512 
2bbe9b13fd0ce8f686b5fa9e1675a41cc37c954cd9d80326fcc7c5f4c767be95dd71f6ddc3e841b6102214cd66205303515fa0750683e539f48b038a32a51af9
 DIST libcifpp-7.0.4-components.cif.xz 62591092 BLAKE2B 
f5fc502cfb0d5c33c2218a02ccbf652c87f0d9d0ac93a8f2eb7c5a7e1e301555cb641f3df815fefbb998ca00f0b04f4fd39de2023dd69ca88de29a814208cd70
 SHA512 
6f85b84b9e4c63b134dedbc41a6a3ba4a7bec6a66b0ce1fcc9248c06b3e5600b8fe31c5ed72722cb40cb431227f17bb9f485e7b471c84efa313b04adfb161ec2

diff --git a/sci-libs/libcifpp/libcifpp-5.1.1.ebuild 
b/sci-libs/libcifpp/libcifpp-5.1.1.ebuild
deleted file mode 100644
index 8d30793f975e..
--- a/sci-libs/libcifpp/libcifpp-5.1.1.ebuild
+++ /dev/null
@@ -1,38 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-inherit cmake
-
-DESCRIPTION="Code to work with mmCIF and PDB files"
-HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
-# Update components file on every bump
-# ftp://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz
-SRC_URI="
-   https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz
-   https://dev.gentoo.org/~pacho/${PN}/${P}-components.cif.xz
-"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-DEPEND="
-   dev-cpp/eigen:3
-   dev-libs/boost:=
-"
-RDEPEND="${DEPEND}"
-
-src_configure() {
-   cp "${WORKDIR}"/${P}-components.cif data/components.cif || die
-
-   local mycmakeargs=(
-   -DBUILD_SHARED_LIBS=ON
-   -DCIFPP_DOWNLOAD_CCD=OFF
-   -DCIFPP_INSTALL_UPDATE_SCRIPT=OFF
-   -DENABLE_TESTING="$(usex test)"
-   )
-   cmake_src_configure
-}

diff --git a/sci-libs/libcifpp/libcifpp-5.1.2.ebuild 
b/sci-libs/libcifpp/libcifpp-5.1.2.ebuild
deleted file mode 100644
index 47d08fc49c68..
--- a/sci-libs/libcifpp/libcifpp-5.1.2.ebuild
+++ /dev/null
@@ -1,38 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-inherit cmake
-
-DESCRIPTION="Code to work with mmCIF and PDB files"
-HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
-# Update components file on every bump
-# http://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz
-SRC_URI="
-   https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz
-

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2024-05-18 Thread Pacho Ramos 
commit: 09dc76ef952cc43cc0086638d8f9fa1b5c7eb355
Author: Pacho Ramos  gentoo  org>
AuthorDate: Sat May 18 09:46:40 2024 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Sat May 18 10:06:40 2024 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=09dc76ef

sci-libs/libcifpp: add 7.0.4

Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/Manifest  |  2 ++
 sci-libs/libcifpp/libcifpp-7.0.4.ebuild | 45 +
 2 files changed, 47 insertions(+)

diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index 4fcf5d210edf..840ee8c08659 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -4,3 +4,5 @@ DIST libcifpp-5.1.2-components.cif.xz 59092332 BLAKE2B 
3672ca8e9553be80822ca7d73
 DIST libcifpp-5.1.2.tar.gz 2244795 BLAKE2B 
7bec9f901c112fabf86c9ce691229f42dcf854be4c99bdf09dbe7dd0d0a3a7e92831cb2b72afa4debc1ce8b1a3a33e27cceda048adca6805802189e0ad50349c
 SHA512 
3adb801ed52b250f6779228288a2c2926c1c7d8d0eff0bb6ed610b4258de8537253d2ce95208e8682b2eb8d0c09ecb53b6269c24bdce907360d9478c6c8c3c1b
 DIST libcifpp-5.2.2-components.cif.xz 60754468 BLAKE2B 
899120c2d6749fb2da9be94de8665f4e961d08c101b33bce98b84bf126b32d43bb79c88da98fb926047522a6f138512dcc59df698f57a83b716e039d422308d4
 SHA512 
d861b83f8b363f2e64ccf073bae768d73f9f57ec2674bf30d43b05fc9a32d235e26c888faaa02b6276e0734632b237b6dd00d8b966dd63b4fcf6562ebcf41cfc
 DIST libcifpp-5.2.2.tar.gz 2277238 BLAKE2B 
a31af09bed7f1dbd6f610e104f0a8439742c863bc58b3680c058cb570a1f93fbcd6d23f29a372aafbb7166a4d86b2590cd24e092b1cc7af25bd09bbe437c93eb
 SHA512 
2bbe9b13fd0ce8f686b5fa9e1675a41cc37c954cd9d80326fcc7c5f4c767be95dd71f6ddc3e841b6102214cd66205303515fa0750683e539f48b038a32a51af9
+DIST libcifpp-7.0.4-components.cif.xz 62591092 BLAKE2B 
f5fc502cfb0d5c33c2218a02ccbf652c87f0d9d0ac93a8f2eb7c5a7e1e301555cb641f3df815fefbb998ca00f0b04f4fd39de2023dd69ca88de29a814208cd70
 SHA512 
6f85b84b9e4c63b134dedbc41a6a3ba4a7bec6a66b0ce1fcc9248c06b3e5600b8fe31c5ed72722cb40cb431227f17bb9f485e7b471c84efa313b04adfb161ec2
+DIST libcifpp-7.0.4.tar.gz 2598838 BLAKE2B 
db6e4b1573d243c511f15ea1fc28867c8a57eb1050c24a59c12a4608b59890ee567569ca4035daead7e74d206a77bb280c56d54ef8b050fe297ccd75cf48ffeb
 SHA512 
6957b3e3ace855c22923391cfd05db40399b6b84fb194ccceaf7b460493ee8576573056296eb06fecf9e6e83c590776fdd5a09f06bb316de61f44468d2a53392

diff --git a/sci-libs/libcifpp/libcifpp-7.0.4.ebuild 
b/sci-libs/libcifpp/libcifpp-7.0.4.ebuild
new file mode 100644
index ..8c10d84a2291
--- /dev/null
+++ b/sci-libs/libcifpp/libcifpp-7.0.4.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit cmake
+
+DESCRIPTION="Code to work with mmCIF and PDB files"
+HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
+# Update components file on every bump
+# https://files.wwpdb.org/pub/pdb/data/monomers/components.cif.gz
+SRC_URI="
+   https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz
+   https://dev.gentoo.org/~pacho/${PN}/${P}-components.cif.xz
+"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+RESTRICT="!test? ( test )"
+
+DEPEND="
+   >=dev-cpp/eigen-3.4.0:3
+   dev-libs/boost:=
+   sys-libs/zlib
+   test? ( dev-cpp/catch:0 )
+"
+RDEPEND="${DEPEND}"
+
+src_prepare() {
+   # https://github.com/PDB-REDO/libcifpp/issues/59
+   sed -i -e '/unit-3d/d' test/CMakeLists.txt || die
+   cmake_src_prepare
+}
+
+src_configure() {
+   cp "${WORKDIR}"/${P}-components.cif rsrc/components.cif || die
+
+   local mycmakeargs=(
+   -DBUILD_SHARED_LIBS=ON
+   -DCIFPP_INSTALL_UPDATE_SCRIPT=OFF
+   -DBUILD_TESTING="$(usex test)"
+   )
+   cmake_src_configure
+}

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2023-10-20 Thread Pacho Ramos 
commit: 5d6fb2107bcfd5f67d20d58c33aebdeb184a6495
Author: Pacho Ramos  gentoo  org>
AuthorDate: Thu Oct 19 15:19:30 2023 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Fri Oct 20 13:14:36 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5d6fb210

sci-libs/libcifpp: add 5.2.2

Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/Manifest  |  2 ++
 sci-libs/libcifpp/libcifpp-5.2.2.ebuild | 38 +
 2 files changed, 40 insertions(+)

diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index 16596109fa60..4fcf5d210edf 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -2,3 +2,5 @@ DIST libcifpp-5.1.1-components.cif.xz 58896016 BLAKE2B 
2bf61944fe6b11325df3c6c32
 DIST libcifpp-5.1.1.tar.gz 2244833 BLAKE2B 
3a5feada63ee123dbed1ba776d0248569f46bbc2d39748db7d3cdfdfb66c89e08c54cdf5133182978e9ef4808c19adfc794ee895a95e882f0d5ff3d173e57311
 SHA512 
3e988d0e4f24174fb47274b0feaae5a8a793441efb9c8273b328f412fbd29ee082cd91e19f19008069ebfd3507c83f7945dc33fc015784727603f987091eaa5c
 DIST libcifpp-5.1.2-components.cif.xz 59092332 BLAKE2B 
3672ca8e9553be80822ca7d7398fd3b73b14b1bf375e63f3a7aef33c2ee92d837c9ca08b3a756d838c512ac5918a0537d70e9a422331fafaf0ff77ecf2134515
 SHA512 
b2d3507d339d8467b10d0a638a5b86e75ed73fb64fee854aefeb2f0ce999e6a99755af30483749ce75e8a4ce63536111bd2a7a5f698dfc86d1a2be3d243304ce
 DIST libcifpp-5.1.2.tar.gz 2244795 BLAKE2B 
7bec9f901c112fabf86c9ce691229f42dcf854be4c99bdf09dbe7dd0d0a3a7e92831cb2b72afa4debc1ce8b1a3a33e27cceda048adca6805802189e0ad50349c
 SHA512 
3adb801ed52b250f6779228288a2c2926c1c7d8d0eff0bb6ed610b4258de8537253d2ce95208e8682b2eb8d0c09ecb53b6269c24bdce907360d9478c6c8c3c1b
+DIST libcifpp-5.2.2-components.cif.xz 60754468 BLAKE2B 
899120c2d6749fb2da9be94de8665f4e961d08c101b33bce98b84bf126b32d43bb79c88da98fb926047522a6f138512dcc59df698f57a83b716e039d422308d4
 SHA512 
d861b83f8b363f2e64ccf073bae768d73f9f57ec2674bf30d43b05fc9a32d235e26c888faaa02b6276e0734632b237b6dd00d8b966dd63b4fcf6562ebcf41cfc
+DIST libcifpp-5.2.2.tar.gz 2277238 BLAKE2B 
a31af09bed7f1dbd6f610e104f0a8439742c863bc58b3680c058cb570a1f93fbcd6d23f29a372aafbb7166a4d86b2590cd24e092b1cc7af25bd09bbe437c93eb
 SHA512 
2bbe9b13fd0ce8f686b5fa9e1675a41cc37c954cd9d80326fcc7c5f4c767be95dd71f6ddc3e841b6102214cd66205303515fa0750683e539f48b038a32a51af9

diff --git a/sci-libs/libcifpp/libcifpp-5.2.2.ebuild 
b/sci-libs/libcifpp/libcifpp-5.2.2.ebuild
new file mode 100644
index ..0a794df24722
--- /dev/null
+++ b/sci-libs/libcifpp/libcifpp-5.2.2.ebuild
@@ -0,0 +1,38 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit cmake
+
+DESCRIPTION="Code to work with mmCIF and PDB files"
+HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
+# Update components file on every bump
+# https://files.wwpdb.org/pub/pdb/data/monomers/components.cif.gz
+SRC_URI="
+   https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz
+   https://dev.gentoo.org/~pacho/${PN}/${P}-components.cif.xz
+"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+RESTRICT="!test? ( test )"
+
+DEPEND="
+   dev-cpp/eigen:3
+   dev-libs/boost:=
+"
+RDEPEND="${DEPEND}"
+
+src_configure() {
+   cp "${WORKDIR}"/${P}-components.cif data/components.cif || die
+
+   local mycmakeargs=(
+   -DBUILD_SHARED_LIBS=ON
+   -DCIFPP_DOWNLOAD_CCD=OFF
+   -DCIFPP_INSTALL_UPDATE_SCRIPT=OFF
+   -DBUILD_TESTING="$(usex test)"
+   )
+   cmake_src_configure
+}

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2023-08-23 Thread Pacho Ramos 
commit: 2a76f7edde29416cacd43e25366e67594dd7f4f9
Author: Pacho Ramos  gentoo  org>
AuthorDate: Wed Aug 23 14:04:16 2023 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Wed Aug 23 14:48:32 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=2a76f7ed

sci-libs/libcifpp: add 5.1.2

Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/Manifest  |  2 ++
 sci-libs/libcifpp/libcifpp-5.1.2.ebuild | 38 +
 2 files changed, 40 insertions(+)

diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index feb34da37448..3e908ec8173b 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -2,3 +2,5 @@ DIST libcifpp-5.1.0.1-components.cif.xz 58001076 BLAKE2B 
4d838e47c74540af54256f6
 DIST libcifpp-5.1.0.1.tar.gz 2242975 BLAKE2B 
7cada39ed6096ee12e662422d1676dadbf0ae71958c206ef4105daeeaaa9b14cbf17143c3baf4e2914e8289801667829af1361d643846827044d7c8e1eb15fa2
 SHA512 
9ca3d7db5889d1baf713475fbfeaf355f45ecb139c838da6348d4bb054c2241204499d3f46e4d45075f2d60f6c48e29866ccf2994c26098b303573d7ba39204d
 DIST libcifpp-5.1.1-components.cif.xz 58896016 BLAKE2B 
2bf61944fe6b11325df3c6c32eaabeb27b0f117eed362dd2eba51f623f4054d142ee84aeb04908322b7aebd30a1bd17da969eeda953f7423cca922006fe767d2
 SHA512 
d4103ac0b0ae5698dd4c17e452ea35871c4854827d3a2ee93f00b73b6f57b87ee2278b44ec0501f818dfc34284b4c19d4617ba3a98df9552da5ebedaa59c9622
 DIST libcifpp-5.1.1.tar.gz 2244833 BLAKE2B 
3a5feada63ee123dbed1ba776d0248569f46bbc2d39748db7d3cdfdfb66c89e08c54cdf5133182978e9ef4808c19adfc794ee895a95e882f0d5ff3d173e57311
 SHA512 
3e988d0e4f24174fb47274b0feaae5a8a793441efb9c8273b328f412fbd29ee082cd91e19f19008069ebfd3507c83f7945dc33fc015784727603f987091eaa5c
+DIST libcifpp-5.1.2-components.cif.xz 59092332 BLAKE2B 
3672ca8e9553be80822ca7d7398fd3b73b14b1bf375e63f3a7aef33c2ee92d837c9ca08b3a756d838c512ac5918a0537d70e9a422331fafaf0ff77ecf2134515
 SHA512 
b2d3507d339d8467b10d0a638a5b86e75ed73fb64fee854aefeb2f0ce999e6a99755af30483749ce75e8a4ce63536111bd2a7a5f698dfc86d1a2be3d243304ce
+DIST libcifpp-5.1.2.tar.gz 2244795 BLAKE2B 
7bec9f901c112fabf86c9ce691229f42dcf854be4c99bdf09dbe7dd0d0a3a7e92831cb2b72afa4debc1ce8b1a3a33e27cceda048adca6805802189e0ad50349c
 SHA512 
3adb801ed52b250f6779228288a2c2926c1c7d8d0eff0bb6ed610b4258de8537253d2ce95208e8682b2eb8d0c09ecb53b6269c24bdce907360d9478c6c8c3c1b

diff --git a/sci-libs/libcifpp/libcifpp-5.1.2.ebuild 
b/sci-libs/libcifpp/libcifpp-5.1.2.ebuild
new file mode 100644
index ..47d08fc49c68
--- /dev/null
+++ b/sci-libs/libcifpp/libcifpp-5.1.2.ebuild
@@ -0,0 +1,38 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit cmake
+
+DESCRIPTION="Code to work with mmCIF and PDB files"
+HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
+# Update components file on every bump
+# http://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz
+SRC_URI="
+   https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz
+   https://dev.gentoo.org/~pacho/${PN}/${P}-components.cif.xz
+"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+RESTRICT="!test? ( test )"
+
+DEPEND="
+   dev-cpp/eigen:3
+   dev-libs/boost:=
+"
+RDEPEND="${DEPEND}"
+
+src_configure() {
+   cp "${WORKDIR}"/${P}-components.cif data/components.cif || die
+
+   local mycmakeargs=(
+   -DBUILD_SHARED_LIBS=ON
+   -DCIFPP_DOWNLOAD_CCD=OFF
+   -DCIFPP_INSTALL_UPDATE_SCRIPT=OFF
+   -DENABLE_TESTING="$(usex test)"
+   )
+   cmake_src_configure
+}

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2023-08-23 Thread Pacho Ramos 
commit: 55b615c8a91437c8210555813b4643f2fdc58dc2
Author: Pacho Ramos  gentoo  org>
AuthorDate: Wed Aug 23 14:04:21 2023 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Wed Aug 23 14:48:33 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=55b615c8

sci-libs/libcifpp: drop 5.1.0.1

Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/Manifest|  2 --
 sci-libs/libcifpp/libcifpp-5.1.0.1.ebuild | 38 ---
 2 files changed, 40 deletions(-)

diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index 3e908ec8173b..16596109fa60 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -1,5 +1,3 @@
-DIST libcifpp-5.1.0.1-components.cif.xz 58001076 BLAKE2B 
4d838e47c74540af54256f6124bd79c9c372c6768eeeabc620b54e1b2c49b2c2adc0b937f195f9544b9f2362fb60c209fb74f88c451ba6d50fe5da5f15ba768b
 SHA512 
e7933a78a61e40c4b2e2aedfda0f36c79939fadc71c78cfde59fcec4de5c2b6c9cf1dbccc383a2f0bbf48744c776cdbb5e7c862e47a6fd2ec229c811caa9b5bc
-DIST libcifpp-5.1.0.1.tar.gz 2242975 BLAKE2B 
7cada39ed6096ee12e662422d1676dadbf0ae71958c206ef4105daeeaaa9b14cbf17143c3baf4e2914e8289801667829af1361d643846827044d7c8e1eb15fa2
 SHA512 
9ca3d7db5889d1baf713475fbfeaf355f45ecb139c838da6348d4bb054c2241204499d3f46e4d45075f2d60f6c48e29866ccf2994c26098b303573d7ba39204d
 DIST libcifpp-5.1.1-components.cif.xz 58896016 BLAKE2B 
2bf61944fe6b11325df3c6c32eaabeb27b0f117eed362dd2eba51f623f4054d142ee84aeb04908322b7aebd30a1bd17da969eeda953f7423cca922006fe767d2
 SHA512 
d4103ac0b0ae5698dd4c17e452ea35871c4854827d3a2ee93f00b73b6f57b87ee2278b44ec0501f818dfc34284b4c19d4617ba3a98df9552da5ebedaa59c9622
 DIST libcifpp-5.1.1.tar.gz 2244833 BLAKE2B 
3a5feada63ee123dbed1ba776d0248569f46bbc2d39748db7d3cdfdfb66c89e08c54cdf5133182978e9ef4808c19adfc794ee895a95e882f0d5ff3d173e57311
 SHA512 
3e988d0e4f24174fb47274b0feaae5a8a793441efb9c8273b328f412fbd29ee082cd91e19f19008069ebfd3507c83f7945dc33fc015784727603f987091eaa5c
 DIST libcifpp-5.1.2-components.cif.xz 59092332 BLAKE2B 
3672ca8e9553be80822ca7d7398fd3b73b14b1bf375e63f3a7aef33c2ee92d837c9ca08b3a756d838c512ac5918a0537d70e9a422331fafaf0ff77ecf2134515
 SHA512 
b2d3507d339d8467b10d0a638a5b86e75ed73fb64fee854aefeb2f0ce999e6a99755af30483749ce75e8a4ce63536111bd2a7a5f698dfc86d1a2be3d243304ce

diff --git a/sci-libs/libcifpp/libcifpp-5.1.0.1.ebuild 
b/sci-libs/libcifpp/libcifpp-5.1.0.1.ebuild
deleted file mode 100644
index 8d30793f975e..
--- a/sci-libs/libcifpp/libcifpp-5.1.0.1.ebuild
+++ /dev/null
@@ -1,38 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-inherit cmake
-
-DESCRIPTION="Code to work with mmCIF and PDB files"
-HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
-# Update components file on every bump
-# ftp://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz
-SRC_URI="
-   https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz
-   https://dev.gentoo.org/~pacho/${PN}/${P}-components.cif.xz
-"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-DEPEND="
-   dev-cpp/eigen:3
-   dev-libs/boost:=
-"
-RDEPEND="${DEPEND}"
-
-src_configure() {
-   cp "${WORKDIR}"/${P}-components.cif data/components.cif || die
-
-   local mycmakeargs=(
-   -DBUILD_SHARED_LIBS=ON
-   -DCIFPP_DOWNLOAD_CCD=OFF
-   -DCIFPP_INSTALL_UPDATE_SCRIPT=OFF
-   -DENABLE_TESTING="$(usex test)"
-   )
-   cmake_src_configure
-}

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/files/

2023-08-13 Thread Conrad Kostecki 
commit: bd9be15170debc1f9acd6db5e2086a13c5afca72
Author: Michael Mair-Keimberger  levelnine  at>
AuthorDate: Sun Aug 13 13:41:24 2023 +
Commit: Conrad Kostecki  gentoo  org>
CommitDate: Mon Aug 14 05:58:20 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bd9be151

sci-libs/libcifpp: remove unused patch(es)

Signed-off-by: Michael Mair-Keimberger  levelnine.at>
Closes: https://github.com/gentoo/gentoo/pull/32282
Signed-off-by: Conrad Kostecki  gentoo.org>

 .../files/libcifpp-5.0.8-missing-include.patch  | 21 -
 1 file changed, 21 deletions(-)

diff --git a/sci-libs/libcifpp/files/libcifpp-5.0.8-missing-include.patch 
b/sci-libs/libcifpp/files/libcifpp-5.0.8-missing-include.patch
deleted file mode 100644
index 26735e003f4d..
--- a/sci-libs/libcifpp/files/libcifpp-5.0.8-missing-include.patch
+++ /dev/null
@@ -1,21 +0,0 @@
-From 0f03fc31e058da4b66f16a67e7674fba1b85ca80 Mon Sep 17 00:00:00 2001
-From: "Maarten L. Hekkelman" 
-Date: Wed, 19 Apr 2023 09:22:32 +0200
-Subject: [PATCH] added required include
-

- include/cif++/text.hpp | 1 +
- 1 file changed, 1 insertion(+)
-
-diff --git a/include/cif++/text.hpp b/include/cif++/text.hpp
-index 9da9ab9..00f33c1 100644
 a/include/cif++/text.hpp
-+++ b/include/cif++/text.hpp
-@@ -30,6 +30,7 @@
- 
- #include 
- #include 
-+#include 
- #include 
- #include 
- #include

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2023-08-08 Thread Pacho Ramos 
commit: 20592be411e61cdb96e8928a49edc6b3e0de1e6f
Author: Pacho Ramos  gentoo  org>
AuthorDate: Tue Aug  8 09:17:55 2023 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Tue Aug  8 09:20:19 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=20592be4

sci-libs/libcifpp: drop 5.0.8

Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/Manifest  |  2 --
 sci-libs/libcifpp/libcifpp-5.0.8.ebuild | 40 -
 2 files changed, 42 deletions(-)

diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index beb53c152004..feb34da37448 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -1,5 +1,3 @@
-DIST libcifpp-5.0.8-components.cif.gz 89984770 BLAKE2B 
d42147d4da56589ac30de9fc3cdacd43e036f548eebf80a19d878c4bf0be535578eec6b78625e1ba60db53090ce5e4b9a3e59b06705f208b660fb2e37e79d1c2
 SHA512 
5f9705714816656aa910b571d77966926d66b2724136119857138975f8be5bb2e889e0c9b28ef1340a72857afb5831dba529b96e8dfc796f739e24b0dcab0424
-DIST libcifpp-5.0.8.tar.gz 1873629 BLAKE2B 
07257a898b1253995880fea9b416b3a7681122b544f8397d353fda4069c33f4a6c2d5cf2210983acf68dc56cb27a20d780461c7c2485a445855e7b45cccd326d
 SHA512 
4ea67fa4a93218fe96289de95591faa9411508e41e308f4ff470033fb0deb4029a86eafb7ba9295807fe3b350e8cc9f2267f7735ee8b1dbb431ee0275db2b8cc
 DIST libcifpp-5.1.0.1-components.cif.xz 58001076 BLAKE2B 
4d838e47c74540af54256f6124bd79c9c372c6768eeeabc620b54e1b2c49b2c2adc0b937f195f9544b9f2362fb60c209fb74f88c451ba6d50fe5da5f15ba768b
 SHA512 
e7933a78a61e40c4b2e2aedfda0f36c79939fadc71c78cfde59fcec4de5c2b6c9cf1dbccc383a2f0bbf48744c776cdbb5e7c862e47a6fd2ec229c811caa9b5bc
 DIST libcifpp-5.1.0.1.tar.gz 2242975 BLAKE2B 
7cada39ed6096ee12e662422d1676dadbf0ae71958c206ef4105daeeaaa9b14cbf17143c3baf4e2914e8289801667829af1361d643846827044d7c8e1eb15fa2
 SHA512 
9ca3d7db5889d1baf713475fbfeaf355f45ecb139c838da6348d4bb054c2241204499d3f46e4d45075f2d60f6c48e29866ccf2994c26098b303573d7ba39204d
 DIST libcifpp-5.1.1-components.cif.xz 58896016 BLAKE2B 
2bf61944fe6b11325df3c6c32eaabeb27b0f117eed362dd2eba51f623f4054d142ee84aeb04908322b7aebd30a1bd17da969eeda953f7423cca922006fe767d2
 SHA512 
d4103ac0b0ae5698dd4c17e452ea35871c4854827d3a2ee93f00b73b6f57b87ee2278b44ec0501f818dfc34284b4c19d4617ba3a98df9552da5ebedaa59c9622

diff --git a/sci-libs/libcifpp/libcifpp-5.0.8.ebuild 
b/sci-libs/libcifpp/libcifpp-5.0.8.ebuild
deleted file mode 100644
index b468bb36559f..
--- a/sci-libs/libcifpp/libcifpp-5.0.8.ebuild
+++ /dev/null
@@ -1,40 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-inherit cmake
-
-DESCRIPTION="Code to work with mmCIF and PDB files"
-HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
-# Update components file on every bump
-# ftp://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz
-SRC_URI="
-   https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz
-   https://dev.gentoo.org/~pacho/${PN}/${P}-components.cif.gz
-"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-DEPEND="dev-libs/boost:="
-RDEPEND="${DEPEND}"
-
-PATCHES=(
-   # https://github.com/PDB-REDO/libcifpp/issues/40
-   "${FILESDIR}/${P}-missing-include.patch"
-)
-
-src_configure() {
-   cp "${WORKDIR}"/${P}-components.cif data/components.cif || die
-
-   local mycmakeargs=(
-   -DBUILD_SHARED_LIBS=ON
-   -DCIFPP_DOWNLOAD_CCD=OFF
-   -DCIFPP_INSTALL_UPDATE_SCRIPT=OFF
-   -DENABLE_TESTING="$(usex test)"
-   )
-   cmake_src_configure
-}

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2023-08-08 Thread Pacho Ramos 
commit: 9ca1e84f6839c992e9e32b90511ff889f0d9a4d3
Author: Pacho Ramos  gentoo  org>
AuthorDate: Tue Aug  8 09:17:49 2023 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Tue Aug  8 09:20:19 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9ca1e84f

sci-libs/libcifpp: add 5.1.1

Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/Manifest  |  2 ++
 sci-libs/libcifpp/libcifpp-5.1.1.ebuild | 38 +
 2 files changed, 40 insertions(+)

diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index 94e30350ad3d..beb53c152004 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -2,3 +2,5 @@ DIST libcifpp-5.0.8-components.cif.gz 89984770 BLAKE2B 
d42147d4da56589ac30de9fc3
 DIST libcifpp-5.0.8.tar.gz 1873629 BLAKE2B 
07257a898b1253995880fea9b416b3a7681122b544f8397d353fda4069c33f4a6c2d5cf2210983acf68dc56cb27a20d780461c7c2485a445855e7b45cccd326d
 SHA512 
4ea67fa4a93218fe96289de95591faa9411508e41e308f4ff470033fb0deb4029a86eafb7ba9295807fe3b350e8cc9f2267f7735ee8b1dbb431ee0275db2b8cc
 DIST libcifpp-5.1.0.1-components.cif.xz 58001076 BLAKE2B 
4d838e47c74540af54256f6124bd79c9c372c6768eeeabc620b54e1b2c49b2c2adc0b937f195f9544b9f2362fb60c209fb74f88c451ba6d50fe5da5f15ba768b
 SHA512 
e7933a78a61e40c4b2e2aedfda0f36c79939fadc71c78cfde59fcec4de5c2b6c9cf1dbccc383a2f0bbf48744c776cdbb5e7c862e47a6fd2ec229c811caa9b5bc
 DIST libcifpp-5.1.0.1.tar.gz 2242975 BLAKE2B 
7cada39ed6096ee12e662422d1676dadbf0ae71958c206ef4105daeeaaa9b14cbf17143c3baf4e2914e8289801667829af1361d643846827044d7c8e1eb15fa2
 SHA512 
9ca3d7db5889d1baf713475fbfeaf355f45ecb139c838da6348d4bb054c2241204499d3f46e4d45075f2d60f6c48e29866ccf2994c26098b303573d7ba39204d
+DIST libcifpp-5.1.1-components.cif.xz 58896016 BLAKE2B 
2bf61944fe6b11325df3c6c32eaabeb27b0f117eed362dd2eba51f623f4054d142ee84aeb04908322b7aebd30a1bd17da969eeda953f7423cca922006fe767d2
 SHA512 
d4103ac0b0ae5698dd4c17e452ea35871c4854827d3a2ee93f00b73b6f57b87ee2278b44ec0501f818dfc34284b4c19d4617ba3a98df9552da5ebedaa59c9622
+DIST libcifpp-5.1.1.tar.gz 2244833 BLAKE2B 
3a5feada63ee123dbed1ba776d0248569f46bbc2d39748db7d3cdfdfb66c89e08c54cdf5133182978e9ef4808c19adfc794ee895a95e882f0d5ff3d173e57311
 SHA512 
3e988d0e4f24174fb47274b0feaae5a8a793441efb9c8273b328f412fbd29ee082cd91e19f19008069ebfd3507c83f7945dc33fc015784727603f987091eaa5c

diff --git a/sci-libs/libcifpp/libcifpp-5.1.1.ebuild 
b/sci-libs/libcifpp/libcifpp-5.1.1.ebuild
new file mode 100644
index ..8d30793f975e
--- /dev/null
+++ b/sci-libs/libcifpp/libcifpp-5.1.1.ebuild
@@ -0,0 +1,38 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit cmake
+
+DESCRIPTION="Code to work with mmCIF and PDB files"
+HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
+# Update components file on every bump
+# ftp://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz
+SRC_URI="
+   https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz
+   https://dev.gentoo.org/~pacho/${PN}/${P}-components.cif.xz
+"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+RESTRICT="!test? ( test )"
+
+DEPEND="
+   dev-cpp/eigen:3
+   dev-libs/boost:=
+"
+RDEPEND="${DEPEND}"
+
+src_configure() {
+   cp "${WORKDIR}"/${P}-components.cif data/components.cif || die
+
+   local mycmakeargs=(
+   -DBUILD_SHARED_LIBS=ON
+   -DCIFPP_DOWNLOAD_CCD=OFF
+   -DCIFPP_INSTALL_UPDATE_SCRIPT=OFF
+   -DENABLE_TESTING="$(usex test)"
+   )
+   cmake_src_configure
+}

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2023-06-08 Thread Pacho Ramos 
commit: d88549bd7497dc9dec19a6c8bb5e038dc9822261
Author: Pacho Ramos  gentoo  org>
AuthorDate: Thu Jun  8 12:33:23 2023 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Thu Jun  8 12:33:43 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d88549bd

sci-libs/libcifpp: add 5.1.0.1

Closes: https://bugs.gentoo.org/905364
Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/Manifest|  2 ++
 sci-libs/libcifpp/libcifpp-5.1.0.1.ebuild | 38 +++
 2 files changed, 40 insertions(+)

diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index 2f693e6d4efe..e5a01eff1d3d 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -1,4 +1,6 @@
 DIST libcifpp-5.0.8-components.cif.gz 89984770 BLAKE2B 
d42147d4da56589ac30de9fc3cdacd43e036f548eebf80a19d878c4bf0be535578eec6b78625e1ba60db53090ce5e4b9a3e59b06705f208b660fb2e37e79d1c2
 SHA512 
5f9705714816656aa910b571d77966926d66b2724136119857138975f8be5bb2e889e0c9b28ef1340a72857afb5831dba529b96e8dfc796f739e24b0dcab0424
 DIST libcifpp-5.0.8.tar.gz 1873629 BLAKE2B 
07257a898b1253995880fea9b416b3a7681122b544f8397d353fda4069c33f4a6c2d5cf2210983acf68dc56cb27a20d780461c7c2485a445855e7b45cccd326d
 SHA512 
4ea67fa4a93218fe96289de95591faa9411508e41e308f4ff470033fb0deb4029a86eafb7ba9295807fe3b350e8cc9f2267f7735ee8b1dbb431ee0275db2b8cc
 DIST libcifpp-5.1.0-components.cif.xz 58001076 BLAKE2B 
4d838e47c74540af54256f6124bd79c9c372c6768eeeabc620b54e1b2c49b2c2adc0b937f195f9544b9f2362fb60c209fb74f88c451ba6d50fe5da5f15ba768b
 SHA512 
e7933a78a61e40c4b2e2aedfda0f36c79939fadc71c78cfde59fcec4de5c2b6c9cf1dbccc383a2f0bbf48744c776cdbb5e7c862e47a6fd2ec229c811caa9b5bc
+DIST libcifpp-5.1.0.1-components.cif.xz 58001076 BLAKE2B 
4d838e47c74540af54256f6124bd79c9c372c6768eeeabc620b54e1b2c49b2c2adc0b937f195f9544b9f2362fb60c209fb74f88c451ba6d50fe5da5f15ba768b
 SHA512 
e7933a78a61e40c4b2e2aedfda0f36c79939fadc71c78cfde59fcec4de5c2b6c9cf1dbccc383a2f0bbf48744c776cdbb5e7c862e47a6fd2ec229c811caa9b5bc
+DIST libcifpp-5.1.0.1.tar.gz 2242975 BLAKE2B 
7cada39ed6096ee12e662422d1676dadbf0ae71958c206ef4105daeeaaa9b14cbf17143c3baf4e2914e8289801667829af1361d643846827044d7c8e1eb15fa2
 SHA512 
9ca3d7db5889d1baf713475fbfeaf355f45ecb139c838da6348d4bb054c2241204499d3f46e4d45075f2d60f6c48e29866ccf2994c26098b303573d7ba39204d
 DIST libcifpp-5.1.0.tar.gz 2242950 BLAKE2B 
aa7efffa580d3e29881dcfcc14e2893cb8e582ca36b353f044501b07aa151c72276046ca21275aaa958eb3345c07d377c1a1b4db14b55f1ee59039eb0bc78668
 SHA512 
8128091afa98ea5aaf17ca3ab23e68a8b3cf903557ee59bdae8ebdba0f65a52883933319d3aa3559e3414eb1a1a2da6b96c63f7df3902ef9d00bfcdbee7e60c4

diff --git a/sci-libs/libcifpp/libcifpp-5.1.0.1.ebuild 
b/sci-libs/libcifpp/libcifpp-5.1.0.1.ebuild
new file mode 100644
index ..8d30793f975e
--- /dev/null
+++ b/sci-libs/libcifpp/libcifpp-5.1.0.1.ebuild
@@ -0,0 +1,38 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit cmake
+
+DESCRIPTION="Code to work with mmCIF and PDB files"
+HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
+# Update components file on every bump
+# ftp://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz
+SRC_URI="
+   https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz
+   https://dev.gentoo.org/~pacho/${PN}/${P}-components.cif.xz
+"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+RESTRICT="!test? ( test )"
+
+DEPEND="
+   dev-cpp/eigen:3
+   dev-libs/boost:=
+"
+RDEPEND="${DEPEND}"
+
+src_configure() {
+   cp "${WORKDIR}"/${P}-components.cif data/components.cif || die
+
+   local mycmakeargs=(
+   -DBUILD_SHARED_LIBS=ON
+   -DCIFPP_DOWNLOAD_CCD=OFF
+   -DCIFPP_INSTALL_UPDATE_SCRIPT=OFF
+   -DENABLE_TESTING="$(usex test)"
+   )
+   cmake_src_configure
+}

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2023-06-08 Thread Pacho Ramos 
commit: 27944f8444d701a4c293af1075dea4a701be7e5d
Author: Pacho Ramos  gentoo  org>
AuthorDate: Thu Jun  8 12:33:33 2023 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Thu Jun  8 12:33:43 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=27944f84

sci-libs/libcifpp: drop 5.1.0

Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/Manifest  |  2 --
 sci-libs/libcifpp/libcifpp-5.1.0.ebuild | 38 -
 2 files changed, 40 deletions(-)

diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index e5a01eff1d3d..94e30350ad3d 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -1,6 +1,4 @@
 DIST libcifpp-5.0.8-components.cif.gz 89984770 BLAKE2B 
d42147d4da56589ac30de9fc3cdacd43e036f548eebf80a19d878c4bf0be535578eec6b78625e1ba60db53090ce5e4b9a3e59b06705f208b660fb2e37e79d1c2
 SHA512 
5f9705714816656aa910b571d77966926d66b2724136119857138975f8be5bb2e889e0c9b28ef1340a72857afb5831dba529b96e8dfc796f739e24b0dcab0424
 DIST libcifpp-5.0.8.tar.gz 1873629 BLAKE2B 
07257a898b1253995880fea9b416b3a7681122b544f8397d353fda4069c33f4a6c2d5cf2210983acf68dc56cb27a20d780461c7c2485a445855e7b45cccd326d
 SHA512 
4ea67fa4a93218fe96289de95591faa9411508e41e308f4ff470033fb0deb4029a86eafb7ba9295807fe3b350e8cc9f2267f7735ee8b1dbb431ee0275db2b8cc
-DIST libcifpp-5.1.0-components.cif.xz 58001076 BLAKE2B 
4d838e47c74540af54256f6124bd79c9c372c6768eeeabc620b54e1b2c49b2c2adc0b937f195f9544b9f2362fb60c209fb74f88c451ba6d50fe5da5f15ba768b
 SHA512 
e7933a78a61e40c4b2e2aedfda0f36c79939fadc71c78cfde59fcec4de5c2b6c9cf1dbccc383a2f0bbf48744c776cdbb5e7c862e47a6fd2ec229c811caa9b5bc
 DIST libcifpp-5.1.0.1-components.cif.xz 58001076 BLAKE2B 
4d838e47c74540af54256f6124bd79c9c372c6768eeeabc620b54e1b2c49b2c2adc0b937f195f9544b9f2362fb60c209fb74f88c451ba6d50fe5da5f15ba768b
 SHA512 
e7933a78a61e40c4b2e2aedfda0f36c79939fadc71c78cfde59fcec4de5c2b6c9cf1dbccc383a2f0bbf48744c776cdbb5e7c862e47a6fd2ec229c811caa9b5bc
 DIST libcifpp-5.1.0.1.tar.gz 2242975 BLAKE2B 
7cada39ed6096ee12e662422d1676dadbf0ae71958c206ef4105daeeaaa9b14cbf17143c3baf4e2914e8289801667829af1361d643846827044d7c8e1eb15fa2
 SHA512 
9ca3d7db5889d1baf713475fbfeaf355f45ecb139c838da6348d4bb054c2241204499d3f46e4d45075f2d60f6c48e29866ccf2994c26098b303573d7ba39204d
-DIST libcifpp-5.1.0.tar.gz 2242950 BLAKE2B 
aa7efffa580d3e29881dcfcc14e2893cb8e582ca36b353f044501b07aa151c72276046ca21275aaa958eb3345c07d377c1a1b4db14b55f1ee59039eb0bc78668
 SHA512 
8128091afa98ea5aaf17ca3ab23e68a8b3cf903557ee59bdae8ebdba0f65a52883933319d3aa3559e3414eb1a1a2da6b96c63f7df3902ef9d00bfcdbee7e60c4

diff --git a/sci-libs/libcifpp/libcifpp-5.1.0.ebuild 
b/sci-libs/libcifpp/libcifpp-5.1.0.ebuild
deleted file mode 100644
index 8d30793f975e..
--- a/sci-libs/libcifpp/libcifpp-5.1.0.ebuild
+++ /dev/null
@@ -1,38 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-inherit cmake
-
-DESCRIPTION="Code to work with mmCIF and PDB files"
-HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
-# Update components file on every bump
-# ftp://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz
-SRC_URI="
-   https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz
-   https://dev.gentoo.org/~pacho/${PN}/${P}-components.cif.xz
-"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-DEPEND="
-   dev-cpp/eigen:3
-   dev-libs/boost:=
-"
-RDEPEND="${DEPEND}"
-
-src_configure() {
-   cp "${WORKDIR}"/${P}-components.cif data/components.cif || die
-
-   local mycmakeargs=(
-   -DBUILD_SHARED_LIBS=ON
-   -DCIFPP_DOWNLOAD_CCD=OFF
-   -DCIFPP_INSTALL_UPDATE_SCRIPT=OFF
-   -DENABLE_TESTING="$(usex test)"
-   )
-   cmake_src_configure
-}

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2023-06-08 Thread Pacho Ramos 
commit: 21f03bea3a1a353b5918c86d22bd9fb7c4837853
Author: Pacho Ramos  gentoo  org>
AuthorDate: Thu Jun  8 08:52:45 2023 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Thu Jun  8 09:38:56 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=21f03bea

sci-libs/libcifpp: add 5.1.0

Closes: https://bugs.gentoo.org/905364
Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/Manifest  |  2 ++
 sci-libs/libcifpp/libcifpp-5.1.0.ebuild | 38 +
 2 files changed, 40 insertions(+)

diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index ae74c8eefc8f..2f693e6d4efe 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -1,2 +1,4 @@
 DIST libcifpp-5.0.8-components.cif.gz 89984770 BLAKE2B 
d42147d4da56589ac30de9fc3cdacd43e036f548eebf80a19d878c4bf0be535578eec6b78625e1ba60db53090ce5e4b9a3e59b06705f208b660fb2e37e79d1c2
 SHA512 
5f9705714816656aa910b571d77966926d66b2724136119857138975f8be5bb2e889e0c9b28ef1340a72857afb5831dba529b96e8dfc796f739e24b0dcab0424
 DIST libcifpp-5.0.8.tar.gz 1873629 BLAKE2B 
07257a898b1253995880fea9b416b3a7681122b544f8397d353fda4069c33f4a6c2d5cf2210983acf68dc56cb27a20d780461c7c2485a445855e7b45cccd326d
 SHA512 
4ea67fa4a93218fe96289de95591faa9411508e41e308f4ff470033fb0deb4029a86eafb7ba9295807fe3b350e8cc9f2267f7735ee8b1dbb431ee0275db2b8cc
+DIST libcifpp-5.1.0-components.cif.xz 58001076 BLAKE2B 
4d838e47c74540af54256f6124bd79c9c372c6768eeeabc620b54e1b2c49b2c2adc0b937f195f9544b9f2362fb60c209fb74f88c451ba6d50fe5da5f15ba768b
 SHA512 
e7933a78a61e40c4b2e2aedfda0f36c79939fadc71c78cfde59fcec4de5c2b6c9cf1dbccc383a2f0bbf48744c776cdbb5e7c862e47a6fd2ec229c811caa9b5bc
+DIST libcifpp-5.1.0.tar.gz 2242950 BLAKE2B 
aa7efffa580d3e29881dcfcc14e2893cb8e582ca36b353f044501b07aa151c72276046ca21275aaa958eb3345c07d377c1a1b4db14b55f1ee59039eb0bc78668
 SHA512 
8128091afa98ea5aaf17ca3ab23e68a8b3cf903557ee59bdae8ebdba0f65a52883933319d3aa3559e3414eb1a1a2da6b96c63f7df3902ef9d00bfcdbee7e60c4

diff --git a/sci-libs/libcifpp/libcifpp-5.1.0.ebuild 
b/sci-libs/libcifpp/libcifpp-5.1.0.ebuild
new file mode 100644
index ..8d30793f975e
--- /dev/null
+++ b/sci-libs/libcifpp/libcifpp-5.1.0.ebuild
@@ -0,0 +1,38 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit cmake
+
+DESCRIPTION="Code to work with mmCIF and PDB files"
+HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
+# Update components file on every bump
+# ftp://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz
+SRC_URI="
+   https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz
+   https://dev.gentoo.org/~pacho/${PN}/${P}-components.cif.xz
+"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+RESTRICT="!test? ( test )"
+
+DEPEND="
+   dev-cpp/eigen:3
+   dev-libs/boost:=
+"
+RDEPEND="${DEPEND}"
+
+src_configure() {
+   cp "${WORKDIR}"/${P}-components.cif data/components.cif || die
+
+   local mycmakeargs=(
+   -DBUILD_SHARED_LIBS=ON
+   -DCIFPP_DOWNLOAD_CCD=OFF
+   -DCIFPP_INSTALL_UPDATE_SCRIPT=OFF
+   -DENABLE_TESTING="$(usex test)"
+   )
+   cmake_src_configure
+}

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/, sci-libs/libcifpp/files/

2023-04-25 Thread Pacho Ramos 
commit: 21fed73301f33176d1986aed3b31e2751f119dc9
Author: Pacho Ramos  gentoo  org>
AuthorDate: Tue Apr 25 13:12:01 2023 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Tue Apr 25 13:12:01 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=21fed733

sci-libs/libcifpp: Fix build with gcc-13

Closes: https://bugs.gentoo.org/897978
Signed-off-by: Pacho Ramos  gentoo.org>

 .../files/libcifpp-5.0.8-missing-include.patch  | 21 +
 sci-libs/libcifpp/libcifpp-5.0.8.ebuild |  5 +
 2 files changed, 26 insertions(+)

diff --git a/sci-libs/libcifpp/files/libcifpp-5.0.8-missing-include.patch 
b/sci-libs/libcifpp/files/libcifpp-5.0.8-missing-include.patch
new file mode 100644
index ..26735e003f4d
--- /dev/null
+++ b/sci-libs/libcifpp/files/libcifpp-5.0.8-missing-include.patch
@@ -0,0 +1,21 @@
+From 0f03fc31e058da4b66f16a67e7674fba1b85ca80 Mon Sep 17 00:00:00 2001
+From: "Maarten L. Hekkelman" 
+Date: Wed, 19 Apr 2023 09:22:32 +0200
+Subject: [PATCH] added required include
+
+---
+ include/cif++/text.hpp | 1 +
+ 1 file changed, 1 insertion(+)
+
+diff --git a/include/cif++/text.hpp b/include/cif++/text.hpp
+index 9da9ab9..00f33c1 100644
+--- a/include/cif++/text.hpp
 b/include/cif++/text.hpp
+@@ -30,6 +30,7 @@
+ 
+ #include 
+ #include 
++#include 
+ #include 
+ #include 
+ #include 

diff --git a/sci-libs/libcifpp/libcifpp-5.0.8.ebuild 
b/sci-libs/libcifpp/libcifpp-5.0.8.ebuild
index 856007e7bd81..b468bb36559f 100644
--- a/sci-libs/libcifpp/libcifpp-5.0.8.ebuild
+++ b/sci-libs/libcifpp/libcifpp-5.0.8.ebuild
@@ -22,6 +22,11 @@ RESTRICT="!test? ( test )"
 DEPEND="dev-libs/boost:="
 RDEPEND="${DEPEND}"
 
+PATCHES=(
+   # https://github.com/PDB-REDO/libcifpp/issues/40
+   "${FILESDIR}/${P}-missing-include.patch"
+)
+
 src_configure() {
cp "${WORKDIR}"/${P}-components.cif data/components.cif || die

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2023-04-25 Thread Pacho Ramos 
commit: b9b6d6405cef6c1ab0af233cdfa5bc920fd22cb0
Author: Pacho Ramos  gentoo  org>
AuthorDate: Tue Apr 25 13:12:43 2023 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Tue Apr 25 13:12:43 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b9b6d640

sci-libs/libcifpp: drop 2.0.4-r1, 3.0.0

Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/Manifest |  4 
 sci-libs/libcifpp/libcifpp-2.0.4-r1.ebuild | 32 --
 sci-libs/libcifpp/libcifpp-3.0.0.ebuild| 31 -
 3 files changed, 67 deletions(-)

diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index 13cfe995bef4..ae74c8eefc8f 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -1,6 +1,2 @@
-DIST components-2.0.4.cif.gz 81445161 BLAKE2B 
80d538109a716af0273d109151a434e68cc1be16dc3a21653a4b78dd9719c93f59259146a6e980fbab4484a6b41d32064a276566411e23bf56b0a42b6dacf408
 SHA512 
a154305f1d3ba2df24ca3859b0a7d1a81cae79c927a708a531bee1689b0b65752fd68032d12335afa4b6b2f5969e003365abd49bed729d740c0f3055328f08ad
-DIST components-3.0.0.cif.gz 82114845 BLAKE2B 
9934110efb9848e8b71e75173bf9c8cfeec1daeef45648296dbcc41641308b9c4e6ff2ef16d86b44ebdb0a200fe6f2a8f13dadac1cce4d8ea2a2961927bf4c94
 SHA512 
625478378d236ec46130d83545c1b0fbdfb5e9cada3834ac14d4b052e9e460e73523e4438b3356a78d64f569e12cd4c13439b5de56462a10d5c11d0de09d52b8
-DIST libcifpp-2.0.4.tar.gz 960402 BLAKE2B 
4650478b187ece13d38c0a5f13c94e6098e3271088a7dd19d72645d52d085304a463387f9d1b1edacbcd03a051b32fbf2384e3287d5ff4835091f2eae2fe2805
 SHA512 
f4a6b126b376b245d399508e9bc360bcf0451e6bd3cad3127567dd95afb1965c8eb764bb9b0bf26be26695fc5636e509709bdbc9f8c9a00939d049c1634dcae0
-DIST libcifpp-3.0.0.tar.gz 950896 BLAKE2B 
8aad3ebea5cc82c2615b6dc6a8a50654375dd9f58ff6c27306bf1415d9658f29f196c5ea9bf0e4f913400b3eba48f19bc11dd97c84b59cf2df94f87afb06d5b7
 SHA512 
507abed829e4d5194eb22fe73d261295a9814577d7bc53743731e7a1ccb032f763f4bfa0e1b23665d52fabbfa38baca20e6373c14db029705427b6fa773df976
 DIST libcifpp-5.0.8-components.cif.gz 89984770 BLAKE2B 
d42147d4da56589ac30de9fc3cdacd43e036f548eebf80a19d878c4bf0be535578eec6b78625e1ba60db53090ce5e4b9a3e59b06705f208b660fb2e37e79d1c2
 SHA512 
5f9705714816656aa910b571d77966926d66b2724136119857138975f8be5bb2e889e0c9b28ef1340a72857afb5831dba529b96e8dfc796f739e24b0dcab0424
 DIST libcifpp-5.0.8.tar.gz 1873629 BLAKE2B 
07257a898b1253995880fea9b416b3a7681122b544f8397d353fda4069c33f4a6c2d5cf2210983acf68dc56cb27a20d780461c7c2485a445855e7b45cccd326d
 SHA512 
4ea67fa4a93218fe96289de95591faa9411508e41e308f4ff470033fb0deb4029a86eafb7ba9295807fe3b350e8cc9f2267f7735ee8b1dbb431ee0275db2b8cc

diff --git a/sci-libs/libcifpp/libcifpp-2.0.4-r1.ebuild 
b/sci-libs/libcifpp/libcifpp-2.0.4-r1.ebuild
deleted file mode 100644
index 70d19261a89d..
--- a/sci-libs/libcifpp/libcifpp-2.0.4-r1.ebuild
+++ /dev/null
@@ -1,32 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-inherit cmake
-
-DESCRIPTION="Code to work with mmCIF and PDB files"
-HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
-SRC_URI="
-   https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz
-   ftp://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz -> 
components-${PV}.cif.gz
-"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-DEPEND="dev-libs/boost:="
-RDEPEND="${DEPEND}"
-
-src_configure() {
-   cp "${WORKDIR}"/components-${PV}.cif data/components.cif || die
-
-   local mycmakeargs=(
-   -DBUILD_SHARED_LIBS=ON
-   -DCIFPP_BUILD_TESTS="$(usex test)"
-   )
-   cmake_src_configure
-}

diff --git a/sci-libs/libcifpp/libcifpp-3.0.0.ebuild 
b/sci-libs/libcifpp/libcifpp-3.0.0.ebuild
deleted file mode 100644
index 32bb52f339bb..
--- a/sci-libs/libcifpp/libcifpp-3.0.0.ebuild
+++ /dev/null
@@ -1,31 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-inherit cmake
-
-DESCRIPTION="Code to work with mmCIF and PDB files"
-HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
-SRC_URI="
-   https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz
-   ftp://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz -> 
components-${PV}.cif.gz
-"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-DEPEND="dev-libs/boost:="
-RDEPEND="${DEPEND}"
-
-src_configure() {
-   cp "${WORKDIR}"/components-${PV}.cif data/components.cif || die
-
-   local mycmakeargs=(
-   -DBUILD_SHARED_LIBS=ON
-   -DCIFPP_BUILD_TESTS="$(usex test)"
-   )
-   cmake_src_configure
-}

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2023-04-18 Thread Pacho Ramos 
commit: 4526d3cdbf2b1e7fff3c904ffe7c49aa953de51c
Author: Pacho Ramos  gentoo  org>
AuthorDate: Tue Apr 18 15:00:43 2023 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Tue Apr 18 15:00:43 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4526d3cd

sci-libs/libcifpp: drop 5.0.5

Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/Manifest  |  2 --
 sci-libs/libcifpp/libcifpp-5.0.5.ebuild | 33 -
 2 files changed, 35 deletions(-)

diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index b84236e6edb8..13cfe995bef4 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -2,7 +2,5 @@ DIST components-2.0.4.cif.gz 81445161 BLAKE2B 
80d538109a716af0273d109151a434e68c
 DIST components-3.0.0.cif.gz 82114845 BLAKE2B 
9934110efb9848e8b71e75173bf9c8cfeec1daeef45648296dbcc41641308b9c4e6ff2ef16d86b44ebdb0a200fe6f2a8f13dadac1cce4d8ea2a2961927bf4c94
 SHA512 
625478378d236ec46130d83545c1b0fbdfb5e9cada3834ac14d4b052e9e460e73523e4438b3356a78d64f569e12cd4c13439b5de56462a10d5c11d0de09d52b8
 DIST libcifpp-2.0.4.tar.gz 960402 BLAKE2B 
4650478b187ece13d38c0a5f13c94e6098e3271088a7dd19d72645d52d085304a463387f9d1b1edacbcd03a051b32fbf2384e3287d5ff4835091f2eae2fe2805
 SHA512 
f4a6b126b376b245d399508e9bc360bcf0451e6bd3cad3127567dd95afb1965c8eb764bb9b0bf26be26695fc5636e509709bdbc9f8c9a00939d049c1634dcae0
 DIST libcifpp-3.0.0.tar.gz 950896 BLAKE2B 
8aad3ebea5cc82c2615b6dc6a8a50654375dd9f58ff6c27306bf1415d9658f29f196c5ea9bf0e4f913400b3eba48f19bc11dd97c84b59cf2df94f87afb06d5b7
 SHA512 
507abed829e4d5194eb22fe73d261295a9814577d7bc53743731e7a1ccb032f763f4bfa0e1b23665d52fabbfa38baca20e6373c14db029705427b6fa773df976
-DIST libcifpp-5.0.5-components.cif.gz 88604747 BLAKE2B 
05b914efaff697fa756a2ccd79836aa0a27a5fcf966eece7a3b5476fb37c876449047de00fea852a224b266188d00d1e5e5fa0148f24a1ae0fea01c0ad3415aa
 SHA512 
a39144034836fbac5ff793c6a87d0e1519e63f16175357a3863d56edf2bf015af4dd6859b9afc8c8d9621c7dab752df5a8557149db2cb37983ab095a831fc2fd
-DIST libcifpp-5.0.5.tar.gz 1869555 BLAKE2B 
515e27aeebb5e12130649a52ac92d69bbec910ec67fef992100a785f21ee6acaf34e951b2cc430acbfc52336a88337f0b54d6ecd030d784fc3ebe2065321f813
 SHA512 
730d212a681009b932f61e99dcde77d89ff5ec618781abf897f5e91c103d334ca560329975d32715a2d84f02026b073f46cba3f10a1b382ff82422d49b8dd50e
 DIST libcifpp-5.0.8-components.cif.gz 89984770 BLAKE2B 
d42147d4da56589ac30de9fc3cdacd43e036f548eebf80a19d878c4bf0be535578eec6b78625e1ba60db53090ce5e4b9a3e59b06705f208b660fb2e37e79d1c2
 SHA512 
5f9705714816656aa910b571d77966926d66b2724136119857138975f8be5bb2e889e0c9b28ef1340a72857afb5831dba529b96e8dfc796f739e24b0dcab0424
 DIST libcifpp-5.0.8.tar.gz 1873629 BLAKE2B 
07257a898b1253995880fea9b416b3a7681122b544f8397d353fda4069c33f4a6c2d5cf2210983acf68dc56cb27a20d780461c7c2485a445855e7b45cccd326d
 SHA512 
4ea67fa4a93218fe96289de95591faa9411508e41e308f4ff470033fb0deb4029a86eafb7ba9295807fe3b350e8cc9f2267f7735ee8b1dbb431ee0275db2b8cc

diff --git a/sci-libs/libcifpp/libcifpp-5.0.5.ebuild 
b/sci-libs/libcifpp/libcifpp-5.0.5.ebuild
deleted file mode 100644
index 6bd4f31ea362..
--- a/sci-libs/libcifpp/libcifpp-5.0.5.ebuild
+++ /dev/null
@@ -1,33 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-inherit cmake
-
-DESCRIPTION="Code to work with mmCIF and PDB files"
-HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
-SRC_URI="
-   https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz
-   https://dev.gentoo.org/~pacho/${PN}/${P}-components.cif.gz
-"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-DEPEND="dev-libs/boost:="
-RDEPEND="${DEPEND}"
-
-src_configure() {
-   cp "${WORKDIR}"/${P}-components.cif data/components.cif || die
-
-   local mycmakeargs=(
-   -DBUILD_SHARED_LIBS=ON
-   -DCIFPP_DOWNLOAD_CCD=OFF
-   -DCIFPP_INSTALL_UPDATE_SCRIPT=OFF
-   -DENABLE_TESTING="$(usex test)"
-   )
-   cmake_src_configure
-}

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2023-02-26 Thread Pacho Ramos 
commit: 5e3d2cb13679354fd08bbb77a249fdd9d33eb528
Author: Pacho Ramos  gentoo  org>
AuthorDate: Sun Feb 26 15:49:38 2023 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Sun Feb 26 15:51:33 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5e3d2cb1

sci-libs/libcifpp: add 5.0.8

Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/Manifest  |  2 ++
 sci-libs/libcifpp/libcifpp-5.0.8.ebuild | 35 +
 2 files changed, 37 insertions(+)

diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index d451b6bee231..b84236e6edb8 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -4,3 +4,5 @@ DIST libcifpp-2.0.4.tar.gz 960402 BLAKE2B 
4650478b187ece13d38c0a5f13c94e6098e327
 DIST libcifpp-3.0.0.tar.gz 950896 BLAKE2B 
8aad3ebea5cc82c2615b6dc6a8a50654375dd9f58ff6c27306bf1415d9658f29f196c5ea9bf0e4f913400b3eba48f19bc11dd97c84b59cf2df94f87afb06d5b7
 SHA512 
507abed829e4d5194eb22fe73d261295a9814577d7bc53743731e7a1ccb032f763f4bfa0e1b23665d52fabbfa38baca20e6373c14db029705427b6fa773df976
 DIST libcifpp-5.0.5-components.cif.gz 88604747 BLAKE2B 
05b914efaff697fa756a2ccd79836aa0a27a5fcf966eece7a3b5476fb37c876449047de00fea852a224b266188d00d1e5e5fa0148f24a1ae0fea01c0ad3415aa
 SHA512 
a39144034836fbac5ff793c6a87d0e1519e63f16175357a3863d56edf2bf015af4dd6859b9afc8c8d9621c7dab752df5a8557149db2cb37983ab095a831fc2fd
 DIST libcifpp-5.0.5.tar.gz 1869555 BLAKE2B 
515e27aeebb5e12130649a52ac92d69bbec910ec67fef992100a785f21ee6acaf34e951b2cc430acbfc52336a88337f0b54d6ecd030d784fc3ebe2065321f813
 SHA512 
730d212a681009b932f61e99dcde77d89ff5ec618781abf897f5e91c103d334ca560329975d32715a2d84f02026b073f46cba3f10a1b382ff82422d49b8dd50e
+DIST libcifpp-5.0.8-components.cif.gz 89984770 BLAKE2B 
d42147d4da56589ac30de9fc3cdacd43e036f548eebf80a19d878c4bf0be535578eec6b78625e1ba60db53090ce5e4b9a3e59b06705f208b660fb2e37e79d1c2
 SHA512 
5f9705714816656aa910b571d77966926d66b2724136119857138975f8be5bb2e889e0c9b28ef1340a72857afb5831dba529b96e8dfc796f739e24b0dcab0424
+DIST libcifpp-5.0.8.tar.gz 1873629 BLAKE2B 
07257a898b1253995880fea9b416b3a7681122b544f8397d353fda4069c33f4a6c2d5cf2210983acf68dc56cb27a20d780461c7c2485a445855e7b45cccd326d
 SHA512 
4ea67fa4a93218fe96289de95591faa9411508e41e308f4ff470033fb0deb4029a86eafb7ba9295807fe3b350e8cc9f2267f7735ee8b1dbb431ee0275db2b8cc

diff --git a/sci-libs/libcifpp/libcifpp-5.0.8.ebuild 
b/sci-libs/libcifpp/libcifpp-5.0.8.ebuild
new file mode 100644
index ..856007e7bd81
--- /dev/null
+++ b/sci-libs/libcifpp/libcifpp-5.0.8.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit cmake
+
+DESCRIPTION="Code to work with mmCIF and PDB files"
+HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
+# Update components file on every bump
+# ftp://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz
+SRC_URI="
+   https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz
+   https://dev.gentoo.org/~pacho/${PN}/${P}-components.cif.gz
+"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+RESTRICT="!test? ( test )"
+
+DEPEND="dev-libs/boost:="
+RDEPEND="${DEPEND}"
+
+src_configure() {
+   cp "${WORKDIR}"/${P}-components.cif data/components.cif || die
+
+   local mycmakeargs=(
+   -DBUILD_SHARED_LIBS=ON
+   -DCIFPP_DOWNLOAD_CCD=OFF
+   -DCIFPP_INSTALL_UPDATE_SCRIPT=OFF
+   -DENABLE_TESTING="$(usex test)"
+   )
+   cmake_src_configure
+}

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2022-12-04 Thread Pacho Ramos 
commit: 7ccc3085065cbc453563ba764113ab0046178e6f
Author: Pacho Ramos  gentoo  org>
AuthorDate: Sun Dec  4 13:59:43 2022 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Sun Dec  4 14:49:19 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7ccc3085

sci-libs/libcifpp: add github upstream metadata

Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/metadata.xml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/sci-libs/libcifpp/metadata.xml b/sci-libs/libcifpp/metadata.xml
index 572c7daf2ccf..403881fddf16 100644
--- a/sci-libs/libcifpp/metadata.xml
+++ b/sci-libs/libcifpp/metadata.xml
@@ -4,4 +4,7 @@

pa...@gentoo.org

+   
+   PDB-REDO/libcifpp
+

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2022-12-04 Thread Pacho Ramos 
commit: d578350ffb974dbc7e320a7fe0dd381a6bb81c82
Author: Pacho Ramos  gentoo  org>
AuthorDate: Sun Dec  4 13:39:19 2022 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Sun Dec  4 14:49:17 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d578350f

sci-libs/libcifpp: add 5.0.5

Closes: https://bugs.gentoo.org/881289
Closes: https://bugs.gentoo.org/878893
Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/Manifest  |  2 ++
 sci-libs/libcifpp/libcifpp-5.0.5.ebuild | 33 +
 2 files changed, 35 insertions(+)

diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index 3f5a40d881c5..d451b6bee231 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -2,3 +2,5 @@ DIST components-2.0.4.cif.gz 81445161 BLAKE2B 
80d538109a716af0273d109151a434e68c
 DIST components-3.0.0.cif.gz 82114845 BLAKE2B 
9934110efb9848e8b71e75173bf9c8cfeec1daeef45648296dbcc41641308b9c4e6ff2ef16d86b44ebdb0a200fe6f2a8f13dadac1cce4d8ea2a2961927bf4c94
 SHA512 
625478378d236ec46130d83545c1b0fbdfb5e9cada3834ac14d4b052e9e460e73523e4438b3356a78d64f569e12cd4c13439b5de56462a10d5c11d0de09d52b8
 DIST libcifpp-2.0.4.tar.gz 960402 BLAKE2B 
4650478b187ece13d38c0a5f13c94e6098e3271088a7dd19d72645d52d085304a463387f9d1b1edacbcd03a051b32fbf2384e3287d5ff4835091f2eae2fe2805
 SHA512 
f4a6b126b376b245d399508e9bc360bcf0451e6bd3cad3127567dd95afb1965c8eb764bb9b0bf26be26695fc5636e509709bdbc9f8c9a00939d049c1634dcae0
 DIST libcifpp-3.0.0.tar.gz 950896 BLAKE2B 
8aad3ebea5cc82c2615b6dc6a8a50654375dd9f58ff6c27306bf1415d9658f29f196c5ea9bf0e4f913400b3eba48f19bc11dd97c84b59cf2df94f87afb06d5b7
 SHA512 
507abed829e4d5194eb22fe73d261295a9814577d7bc53743731e7a1ccb032f763f4bfa0e1b23665d52fabbfa38baca20e6373c14db029705427b6fa773df976
+DIST libcifpp-5.0.5-components.cif.gz 88604747 BLAKE2B 
05b914efaff697fa756a2ccd79836aa0a27a5fcf966eece7a3b5476fb37c876449047de00fea852a224b266188d00d1e5e5fa0148f24a1ae0fea01c0ad3415aa
 SHA512 
a39144034836fbac5ff793c6a87d0e1519e63f16175357a3863d56edf2bf015af4dd6859b9afc8c8d9621c7dab752df5a8557149db2cb37983ab095a831fc2fd
+DIST libcifpp-5.0.5.tar.gz 1869555 BLAKE2B 
515e27aeebb5e12130649a52ac92d69bbec910ec67fef992100a785f21ee6acaf34e951b2cc430acbfc52336a88337f0b54d6ecd030d784fc3ebe2065321f813
 SHA512 
730d212a681009b932f61e99dcde77d89ff5ec618781abf897f5e91c103d334ca560329975d32715a2d84f02026b073f46cba3f10a1b382ff82422d49b8dd50e

diff --git a/sci-libs/libcifpp/libcifpp-5.0.5.ebuild 
b/sci-libs/libcifpp/libcifpp-5.0.5.ebuild
new file mode 100644
index ..6bd4f31ea362
--- /dev/null
+++ b/sci-libs/libcifpp/libcifpp-5.0.5.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit cmake
+
+DESCRIPTION="Code to work with mmCIF and PDB files"
+HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
+SRC_URI="
+   https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz
+   https://dev.gentoo.org/~pacho/${PN}/${P}-components.cif.gz
+"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+RESTRICT="!test? ( test )"
+
+DEPEND="dev-libs/boost:="
+RDEPEND="${DEPEND}"
+
+src_configure() {
+   cp "${WORKDIR}"/${P}-components.cif data/components.cif || die
+
+   local mycmakeargs=(
+   -DBUILD_SHARED_LIBS=ON
+   -DCIFPP_DOWNLOAD_CCD=OFF
+   -DCIFPP_INSTALL_UPDATE_SCRIPT=OFF
+   -DENABLE_TESTING="$(usex test)"
+   )
+   cmake_src_configure
+}

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2022-09-04 Thread David Seifert 
commit: 3911cd302bdab44314a782387abe80bcf1e8904d
Author: David Seifert  gentoo  org>
AuthorDate: Sun Sep  4 13:03:29 2022 +
Commit: David Seifert  gentoo  org>
CommitDate: Sun Sep  4 13:03:29 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3911cd30

sci-libs/libcifpp: remove stale boost lower bounds

Signed-off-by: David Seifert  gentoo.org>

 sci-libs/libcifpp/libcifpp-2.0.4-r1.ebuild | 2 +-
 sci-libs/libcifpp/libcifpp-3.0.0.ebuild| 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-libs/libcifpp/libcifpp-2.0.4-r1.ebuild 
b/sci-libs/libcifpp/libcifpp-2.0.4-r1.ebuild
index e01339f95bce..70d19261a89d 100644
--- a/sci-libs/libcifpp/libcifpp-2.0.4-r1.ebuild
+++ b/sci-libs/libcifpp/libcifpp-2.0.4-r1.ebuild
@@ -18,7 +18,7 @@ KEYWORDS="~amd64"
 IUSE="test"
 RESTRICT="!test? ( test )"
 
-DEPEND=">=dev-libs/boost-1.70:="
+DEPEND="dev-libs/boost:="
 RDEPEND="${DEPEND}"
 
 src_configure() {

diff --git a/sci-libs/libcifpp/libcifpp-3.0.0.ebuild 
b/sci-libs/libcifpp/libcifpp-3.0.0.ebuild
index 69f465d5133f..32bb52f339bb 100644
--- a/sci-libs/libcifpp/libcifpp-3.0.0.ebuild
+++ b/sci-libs/libcifpp/libcifpp-3.0.0.ebuild
@@ -17,7 +17,7 @@ KEYWORDS="~amd64 ~x86"
 IUSE="test"
 RESTRICT="!test? ( test )"
 
-DEPEND=">=dev-libs/boost-1.70:="
+DEPEND="dev-libs/boost:="
 RDEPEND="${DEPEND}"
 
 src_configure() {

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2022-09-04 Thread David Seifert 
commit: 9be8f560449065f89cdd879c203b14e4625e17d9
Author: David Seifert  gentoo  org>
AuthorDate: Sun Sep  4 12:22:35 2022 +
Commit: David Seifert  gentoo  org>
CommitDate: Sun Sep  4 12:22:35 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9be8f560

sci-libs/libcifpp: remove boost[threads(+)] usedep

Signed-off-by: David Seifert  gentoo.org>

 sci-libs/libcifpp/libcifpp-2.0.4-r1.ebuild | 4 ++--
 sci-libs/libcifpp/libcifpp-3.0.0.ebuild| 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/sci-libs/libcifpp/libcifpp-2.0.4-r1.ebuild 
b/sci-libs/libcifpp/libcifpp-2.0.4-r1.ebuild
index 3064d4f1e9b0..e01339f95bce 100644
--- a/sci-libs/libcifpp/libcifpp-2.0.4-r1.ebuild
+++ b/sci-libs/libcifpp/libcifpp-2.0.4-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
@@ -18,7 +18,7 @@ KEYWORDS="~amd64"
 IUSE="test"
 RESTRICT="!test? ( test )"
 
-DEPEND=">=dev-libs/boost-1.70:=[threads(+)]"
+DEPEND=">=dev-libs/boost-1.70:="
 RDEPEND="${DEPEND}"
 
 src_configure() {

diff --git a/sci-libs/libcifpp/libcifpp-3.0.0.ebuild 
b/sci-libs/libcifpp/libcifpp-3.0.0.ebuild
index 78a60b686a26..69f465d5133f 100644
--- a/sci-libs/libcifpp/libcifpp-3.0.0.ebuild
+++ b/sci-libs/libcifpp/libcifpp-3.0.0.ebuild
@@ -17,7 +17,7 @@ KEYWORDS="~amd64 ~x86"
 IUSE="test"
 RESTRICT="!test? ( test )"
 
-DEPEND=">=dev-libs/boost-1.70:=[threads(+)]"
+DEPEND=">=dev-libs/boost-1.70:="
 RDEPEND="${DEPEND}"
 
 src_configure() {

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2022-03-17 Thread Jakov Smolić 
commit: d55085ef488b2e55c7168c6f1d29dbef2ef8efd0
Author: Jakov Smolić  gentoo  org>
AuthorDate: Thu Mar 17 13:36:25 2022 +
Commit: Jakov Smolić  gentoo  org>
CommitDate: Thu Mar 17 13:36:25 2022 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d55085ef

sci-libs/libcifpp: Keyword 3.0.0 x86, #834864

Signed-off-by: Jakov Smolić  gentoo.org>

 sci-libs/libcifpp/libcifpp-3.0.0.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-libs/libcifpp/libcifpp-3.0.0.ebuild 
b/sci-libs/libcifpp/libcifpp-3.0.0.ebuild
index b2fd2f6f962e..78a60b686a26 100644
--- a/sci-libs/libcifpp/libcifpp-3.0.0.ebuild
+++ b/sci-libs/libcifpp/libcifpp-3.0.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
@@ -13,7 +13,7 @@ SRC_URI="
 
 LICENSE="BSD-2"
 SLOT="0"
-KEYWORDS="~amd64"
+KEYWORDS="~amd64 ~x86"
 IUSE="test"
 RESTRICT="!test? ( test )"

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2021-12-16 Thread Pacho Ramos 
commit: 7196487a84197faf119aeda975350cedc64b256b
Author: Pacho Ramos  gentoo  org>
AuthorDate: Thu Dec 16 08:46:32 2021 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Thu Dec 16 08:46:54 2021 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7196487a

sci-libs/libcifpp: Bump to 3.0.0

Closes: https://bugs.gentoo.org/823914
Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/Manifest  |  2 ++
 sci-libs/libcifpp/libcifpp-3.0.0.ebuild | 31 +++
 2 files changed, 33 insertions(+)

diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index e3058c6df4bb..3f5a40d881c5 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -1,2 +1,4 @@
 DIST components-2.0.4.cif.gz 81445161 BLAKE2B 
80d538109a716af0273d109151a434e68cc1be16dc3a21653a4b78dd9719c93f59259146a6e980fbab4484a6b41d32064a276566411e23bf56b0a42b6dacf408
 SHA512 
a154305f1d3ba2df24ca3859b0a7d1a81cae79c927a708a531bee1689b0b65752fd68032d12335afa4b6b2f5969e003365abd49bed729d740c0f3055328f08ad
+DIST components-3.0.0.cif.gz 82114845 BLAKE2B 
9934110efb9848e8b71e75173bf9c8cfeec1daeef45648296dbcc41641308b9c4e6ff2ef16d86b44ebdb0a200fe6f2a8f13dadac1cce4d8ea2a2961927bf4c94
 SHA512 
625478378d236ec46130d83545c1b0fbdfb5e9cada3834ac14d4b052e9e460e73523e4438b3356a78d64f569e12cd4c13439b5de56462a10d5c11d0de09d52b8
 DIST libcifpp-2.0.4.tar.gz 960402 BLAKE2B 
4650478b187ece13d38c0a5f13c94e6098e3271088a7dd19d72645d52d085304a463387f9d1b1edacbcd03a051b32fbf2384e3287d5ff4835091f2eae2fe2805
 SHA512 
f4a6b126b376b245d399508e9bc360bcf0451e6bd3cad3127567dd95afb1965c8eb764bb9b0bf26be26695fc5636e509709bdbc9f8c9a00939d049c1634dcae0
+DIST libcifpp-3.0.0.tar.gz 950896 BLAKE2B 
8aad3ebea5cc82c2615b6dc6a8a50654375dd9f58ff6c27306bf1415d9658f29f196c5ea9bf0e4f913400b3eba48f19bc11dd97c84b59cf2df94f87afb06d5b7
 SHA512 
507abed829e4d5194eb22fe73d261295a9814577d7bc53743731e7a1ccb032f763f4bfa0e1b23665d52fabbfa38baca20e6373c14db029705427b6fa773df976

diff --git a/sci-libs/libcifpp/libcifpp-3.0.0.ebuild 
b/sci-libs/libcifpp/libcifpp-3.0.0.ebuild
new file mode 100644
index ..b2fd2f6f962e
--- /dev/null
+++ b/sci-libs/libcifpp/libcifpp-3.0.0.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit cmake
+
+DESCRIPTION="Code to work with mmCIF and PDB files"
+HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
+SRC_URI="
+   https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz
+   ftp://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz -> 
components-${PV}.cif.gz
+"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="test"
+RESTRICT="!test? ( test )"
+
+DEPEND=">=dev-libs/boost-1.70:=[threads(+)]"
+RDEPEND="${DEPEND}"
+
+src_configure() {
+   cp "${WORKDIR}"/components-${PV}.cif data/components.cif || die
+
+   local mycmakeargs=(
+   -DBUILD_SHARED_LIBS=ON
+   -DCIFPP_BUILD_TESTS="$(usex test)"
+   )
+   cmake_src_configure
+}

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2021-11-15 Thread Sam James 
commit: 7bb5230e3762a0fb07d7af810349052860a36903
Author: Sam James  gentoo  org>
AuthorDate: Tue Nov 16 03:13:34 2021 +
Commit: Sam James  gentoo  org>
CommitDate: Tue Nov 16 03:14:10 2021 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7bb5230e

sci-libs/libcifpp: fix Boost dependency

We use Boost headers (=> DEPEND) and link against it (=> RDEPEND).

Signed-off-by: Sam James  gentoo.org>

 .../libcifpp/{libcifpp-2.0.4.ebuild => libcifpp-2.0.4-r1.ebuild} | 9 +++--
 1 file changed, 3 insertions(+), 6 deletions(-)

diff --git a/sci-libs/libcifpp/libcifpp-2.0.4.ebuild 
b/sci-libs/libcifpp/libcifpp-2.0.4-r1.ebuild
similarity index 90%
rename from sci-libs/libcifpp/libcifpp-2.0.4.ebuild
rename to sci-libs/libcifpp/libcifpp-2.0.4-r1.ebuild
index 1cbb3962edf8..3064d4f1e9b0 100644
--- a/sci-libs/libcifpp/libcifpp-2.0.4.ebuild
+++ b/sci-libs/libcifpp/libcifpp-2.0.4-r1.ebuild
@@ -2,6 +2,7 @@
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
+
 inherit cmake
 
 DESCRIPTION="Code to work with mmCIF and PDB files"
@@ -14,15 +15,11 @@ SRC_URI="
 LICENSE="BSD-2"
 SLOT="0"
 KEYWORDS="~amd64"
-
 IUSE="test"
 RESTRICT="!test? ( test )"
 
-BDEPEND="
-   >=dev-libs/boost-1.70.0:0=[threads(+)]
-"
-DEPEND=""
-RDEPEND=""
+DEPEND=">=dev-libs/boost-1.70:=[threads(+)]"
+RDEPEND="${DEPEND}"
 
 src_configure() {
cp "${WORKDIR}"/components-${PV}.cif data/components.cif || die

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2021-11-06 Thread Pacho Ramos 
commit: 5ebb50272618261991a59a1c8776fabff46ac402
Author: Pacho Ramos  gentoo  org>
AuthorDate: Sat Nov  6 09:00:22 2021 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Sat Nov  6 09:10:21 2021 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5ebb5027

sci-libs/libcifpp: Bump to 2.0.4

Closes: https://bugs.gentoo.org/818958
Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/Manifest  |  2 ++
 sci-libs/libcifpp/libcifpp-2.0.4.ebuild | 35 +
 2 files changed, 37 insertions(+)

diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index adfb7f2d35c..d3367c91733 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -1,6 +1,8 @@
 DIST components-1.1.1.cif.gz 80378687 BLAKE2B 
0776d79f733762ad19177bc93a5587e90966a7862f84174ede23a5875ae4633b519168b24b1c02d7afb30f9049d48434921a70c097a7e8238a5745f1676dcc78
 SHA512 
fc68513b37871677beb60855e82ed5831e10b08340697a97bbc7113d4c898b8e8382d097d36793346e34b97f0b5def5312fe7eb81ab4f120ad3908ee8d6d1aa3
 DIST components-2.0.0.cif.gz 80878869 BLAKE2B 
183c1227f403466fa543575243176d84e72bf224a70500876c77a52f0c8e1af80e99ed8cd8b428c7adc822e7006501a0cfc414e60a2896b1f53b98a116e3e4d8
 SHA512 
b1212155b8d6c593593013b1b39b9c711e85c1bf9b68d412dda25720ab94d82ace4445f47f832a66901d0ed5773e2d2cc5dde7a9170b9294c506edd6843d6d66
 DIST components-2.0.3.cif.gz 81156388 BLAKE2B 
00a70db993a5cea859e9839fa7e76bbe59f7e8568bf4d69c7550fd8b5afbb85c8efc577c3a2d58e1c472ce5658fc9ece874d827ce20d4214377576bab6bf8577
 SHA512 
2a686161a39383efe0a21da600b51dad125262f04a51c74ab780df06425b657cc487c82e9816ad129997ad1f81c008e60bcb9a23095fa479c7dff2fb3d6df6aa
+DIST components-2.0.4.cif.gz 81445161 BLAKE2B 
80d538109a716af0273d109151a434e68cc1be16dc3a21653a4b78dd9719c93f59259146a6e980fbab4484a6b41d32064a276566411e23bf56b0a42b6dacf408
 SHA512 
a154305f1d3ba2df24ca3859b0a7d1a81cae79c927a708a531bee1689b0b65752fd68032d12335afa4b6b2f5969e003365abd49bed729d740c0f3055328f08ad
 DIST libcifpp-1.1.1.tar.gz 978553 BLAKE2B 
750cf80bac769a3db86b3be03924402da0254e69206a15222a5dfaa23a7eadcac1f57eb054f2fc783c287bfed86dab0a75d2994b031cc3cd3c2431a26e250d17
 SHA512 
e74419dada21ea12423c404c34eeb0b410fdb0b26827cd4451375329668909879b6d4795451c6f7c2b2ffc8d282dfcff2f1800630a3487111404335be4cb338f
 DIST libcifpp-2.0.0.tar.gz 996947 BLAKE2B 
58568f18b17d79d8f3e2487035b505d814e0343bb56a2b18665651a3788b54d5330309c3c27b6f4636ab5e9bf3f85ebdb1a4fc8ed67adc7941559c481135f873
 SHA512 
8ca3f0445dad758f7fd63a0039fbe3267420d2b51036cd67a38d925b498c8ac580b86a9900317c63b4705a4a9fc9c3ef1036d40fd3f20f8eff2d6e6e5da7b735
 DIST libcifpp-2.0.3.tar.gz 959697 BLAKE2B 
40f04926ec307260ab9d552aa3fa646cd776b48e84c1bf2ca64769b8726f647cd0f3f81da80a2d94b4cd0b26e438106db5626319a245c769a56f42ab32273d03
 SHA512 
7d0ebf70be1a1debe22a0dc2404b78c766d1d263ed556c47a9b77da510f1a8112d0a5ff61706f697245916534900e2791ef2b927b439cbecda6558c84c133a0e
+DIST libcifpp-2.0.4.tar.gz 960402 BLAKE2B 
4650478b187ece13d38c0a5f13c94e6098e3271088a7dd19d72645d52d085304a463387f9d1b1edacbcd03a051b32fbf2384e3287d5ff4835091f2eae2fe2805
 SHA512 
f4a6b126b376b245d399508e9bc360bcf0451e6bd3cad3127567dd95afb1965c8eb764bb9b0bf26be26695fc5636e509709bdbc9f8c9a00939d049c1634dcae0

diff --git a/sci-libs/libcifpp/libcifpp-2.0.4.ebuild 
b/sci-libs/libcifpp/libcifpp-2.0.4.ebuild
new file mode 100644
index 000..1cbb3962edf
--- /dev/null
+++ b/sci-libs/libcifpp/libcifpp-2.0.4.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit cmake
+
+DESCRIPTION="Code to work with mmCIF and PDB files"
+HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
+SRC_URI="
+   https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz
+   ftp://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz -> 
components-${PV}.cif.gz
+"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64"
+
+IUSE="test"
+RESTRICT="!test? ( test )"
+
+BDEPEND="
+   >=dev-libs/boost-1.70.0:0=[threads(+)]
+"
+DEPEND=""
+RDEPEND=""
+
+src_configure() {
+   cp "${WORKDIR}"/components-${PV}.cif data/components.cif || die
+
+   local mycmakeargs=(
+   -DBUILD_SHARED_LIBS=ON
+   -DCIFPP_BUILD_TESTS="$(usex test)"
+   )
+   cmake_src_configure
+}

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2021-11-06 Thread Pacho Ramos 
commit: db8039d1a7b86af5f1cb18a1b7eefe78e76f59da
Author: Pacho Ramos  gentoo  org>
AuthorDate: Sat Nov  6 09:00:54 2021 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Sat Nov  6 09:10:22 2021 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=db8039d1

sci-libs/libcifpp: Drop old

Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/Manifest  |  6 --
 sci-libs/libcifpp/libcifpp-1.1.1.ebuild | 37 -
 sci-libs/libcifpp/libcifpp-2.0.0.ebuild | 37 -
 sci-libs/libcifpp/libcifpp-2.0.3.ebuild | 35 ---
 4 files changed, 115 deletions(-)

diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index d3367c91733..e3058c6df4b 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -1,8 +1,2 @@
-DIST components-1.1.1.cif.gz 80378687 BLAKE2B 
0776d79f733762ad19177bc93a5587e90966a7862f84174ede23a5875ae4633b519168b24b1c02d7afb30f9049d48434921a70c097a7e8238a5745f1676dcc78
 SHA512 
fc68513b37871677beb60855e82ed5831e10b08340697a97bbc7113d4c898b8e8382d097d36793346e34b97f0b5def5312fe7eb81ab4f120ad3908ee8d6d1aa3
-DIST components-2.0.0.cif.gz 80878869 BLAKE2B 
183c1227f403466fa543575243176d84e72bf224a70500876c77a52f0c8e1af80e99ed8cd8b428c7adc822e7006501a0cfc414e60a2896b1f53b98a116e3e4d8
 SHA512 
b1212155b8d6c593593013b1b39b9c711e85c1bf9b68d412dda25720ab94d82ace4445f47f832a66901d0ed5773e2d2cc5dde7a9170b9294c506edd6843d6d66
-DIST components-2.0.3.cif.gz 81156388 BLAKE2B 
00a70db993a5cea859e9839fa7e76bbe59f7e8568bf4d69c7550fd8b5afbb85c8efc577c3a2d58e1c472ce5658fc9ece874d827ce20d4214377576bab6bf8577
 SHA512 
2a686161a39383efe0a21da600b51dad125262f04a51c74ab780df06425b657cc487c82e9816ad129997ad1f81c008e60bcb9a23095fa479c7dff2fb3d6df6aa
 DIST components-2.0.4.cif.gz 81445161 BLAKE2B 
80d538109a716af0273d109151a434e68cc1be16dc3a21653a4b78dd9719c93f59259146a6e980fbab4484a6b41d32064a276566411e23bf56b0a42b6dacf408
 SHA512 
a154305f1d3ba2df24ca3859b0a7d1a81cae79c927a708a531bee1689b0b65752fd68032d12335afa4b6b2f5969e003365abd49bed729d740c0f3055328f08ad
-DIST libcifpp-1.1.1.tar.gz 978553 BLAKE2B 
750cf80bac769a3db86b3be03924402da0254e69206a15222a5dfaa23a7eadcac1f57eb054f2fc783c287bfed86dab0a75d2994b031cc3cd3c2431a26e250d17
 SHA512 
e74419dada21ea12423c404c34eeb0b410fdb0b26827cd4451375329668909879b6d4795451c6f7c2b2ffc8d282dfcff2f1800630a3487111404335be4cb338f
-DIST libcifpp-2.0.0.tar.gz 996947 BLAKE2B 
58568f18b17d79d8f3e2487035b505d814e0343bb56a2b18665651a3788b54d5330309c3c27b6f4636ab5e9bf3f85ebdb1a4fc8ed67adc7941559c481135f873
 SHA512 
8ca3f0445dad758f7fd63a0039fbe3267420d2b51036cd67a38d925b498c8ac580b86a9900317c63b4705a4a9fc9c3ef1036d40fd3f20f8eff2d6e6e5da7b735
-DIST libcifpp-2.0.3.tar.gz 959697 BLAKE2B 
40f04926ec307260ab9d552aa3fa646cd776b48e84c1bf2ca64769b8726f647cd0f3f81da80a2d94b4cd0b26e438106db5626319a245c769a56f42ab32273d03
 SHA512 
7d0ebf70be1a1debe22a0dc2404b78c766d1d263ed556c47a9b77da510f1a8112d0a5ff61706f697245916534900e2791ef2b927b439cbecda6558c84c133a0e
 DIST libcifpp-2.0.4.tar.gz 960402 BLAKE2B 
4650478b187ece13d38c0a5f13c94e6098e3271088a7dd19d72645d52d085304a463387f9d1b1edacbcd03a051b32fbf2384e3287d5ff4835091f2eae2fe2805
 SHA512 
f4a6b126b376b245d399508e9bc360bcf0451e6bd3cad3127567dd95afb1965c8eb764bb9b0bf26be26695fc5636e509709bdbc9f8c9a00939d049c1634dcae0

diff --git a/sci-libs/libcifpp/libcifpp-1.1.1.ebuild 
b/sci-libs/libcifpp/libcifpp-1.1.1.ebuild
deleted file mode 100644
index 33da8b38c37..000
--- a/sci-libs/libcifpp/libcifpp-1.1.1.ebuild
+++ /dev/null
@@ -1,37 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-inherit cmake
-
-DESCRIPTION="Code to work with mmCIF and PDB files"
-HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
-SRC_URI="
-   https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz
-   ftp://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz -> 
components-${PV}.cif.gz
-"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-BDEPEND="
-   >=dev-libs/boost-1.70.0:0=[threads(+)]
-"
-DEPEND=""
-RDEPEND=""
-
-src_configure() {
-   mkdir data || die
-   cp "${WORKDIR}"/components-${PV}.cif data/components.cif || die
-
-   local mycmakeargs=(
-   -DBUILD_SHARED_LIBS=ON
-   -DUSE_RSRC=OFF
-   -DCIFPP_BUILD_TESTS="$(usex test)"
-   )
-   cmake_src_configure
-}

diff --git a/sci-libs/libcifpp/libcifpp-2.0.0.ebuild 
b/sci-libs/libcifpp/libcifpp-2.0.0.ebuild
deleted file mode 100644
index 1f190d58f57..000
--- a/sci-libs/libcifpp/libcifpp-2.0.0.ebuild
+++ /dev/null
@@ -1,37 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-inherit cmake
-
-DESCRIPTION="Code to work with mmCIF and PDB

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2021-10-19 Thread Pacho Ramos 
commit: fd32fb75bb6c452706c2b6f0e8e863b743429e69
Author: Pacho Ramos  gentoo  org>
AuthorDate: Tue Oct 19 21:04:05 2021 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Tue Oct 19 21:04:05 2021 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fd32fb75

sci-libs/libcifpp: Bump to 2.0.3

Package-Manager: Portage-3.0.24, Repoman-3.0.3
Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/Manifest  |  2 ++
 sci-libs/libcifpp/libcifpp-2.0.3.ebuild | 35 +
 2 files changed, 37 insertions(+)

diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index f4e01d1d6a7..adfb7f2d35c 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -1,4 +1,6 @@
 DIST components-1.1.1.cif.gz 80378687 BLAKE2B 
0776d79f733762ad19177bc93a5587e90966a7862f84174ede23a5875ae4633b519168b24b1c02d7afb30f9049d48434921a70c097a7e8238a5745f1676dcc78
 SHA512 
fc68513b37871677beb60855e82ed5831e10b08340697a97bbc7113d4c898b8e8382d097d36793346e34b97f0b5def5312fe7eb81ab4f120ad3908ee8d6d1aa3
 DIST components-2.0.0.cif.gz 80878869 BLAKE2B 
183c1227f403466fa543575243176d84e72bf224a70500876c77a52f0c8e1af80e99ed8cd8b428c7adc822e7006501a0cfc414e60a2896b1f53b98a116e3e4d8
 SHA512 
b1212155b8d6c593593013b1b39b9c711e85c1bf9b68d412dda25720ab94d82ace4445f47f832a66901d0ed5773e2d2cc5dde7a9170b9294c506edd6843d6d66
+DIST components-2.0.3.cif.gz 81156388 BLAKE2B 
00a70db993a5cea859e9839fa7e76bbe59f7e8568bf4d69c7550fd8b5afbb85c8efc577c3a2d58e1c472ce5658fc9ece874d827ce20d4214377576bab6bf8577
 SHA512 
2a686161a39383efe0a21da600b51dad125262f04a51c74ab780df06425b657cc487c82e9816ad129997ad1f81c008e60bcb9a23095fa479c7dff2fb3d6df6aa
 DIST libcifpp-1.1.1.tar.gz 978553 BLAKE2B 
750cf80bac769a3db86b3be03924402da0254e69206a15222a5dfaa23a7eadcac1f57eb054f2fc783c287bfed86dab0a75d2994b031cc3cd3c2431a26e250d17
 SHA512 
e74419dada21ea12423c404c34eeb0b410fdb0b26827cd4451375329668909879b6d4795451c6f7c2b2ffc8d282dfcff2f1800630a3487111404335be4cb338f
 DIST libcifpp-2.0.0.tar.gz 996947 BLAKE2B 
58568f18b17d79d8f3e2487035b505d814e0343bb56a2b18665651a3788b54d5330309c3c27b6f4636ab5e9bf3f85ebdb1a4fc8ed67adc7941559c481135f873
 SHA512 
8ca3f0445dad758f7fd63a0039fbe3267420d2b51036cd67a38d925b498c8ac580b86a9900317c63b4705a4a9fc9c3ef1036d40fd3f20f8eff2d6e6e5da7b735
+DIST libcifpp-2.0.3.tar.gz 959697 BLAKE2B 
40f04926ec307260ab9d552aa3fa646cd776b48e84c1bf2ca64769b8726f647cd0f3f81da80a2d94b4cd0b26e438106db5626319a245c769a56f42ab32273d03
 SHA512 
7d0ebf70be1a1debe22a0dc2404b78c766d1d263ed556c47a9b77da510f1a8112d0a5ff61706f697245916534900e2791ef2b927b439cbecda6558c84c133a0e

diff --git a/sci-libs/libcifpp/libcifpp-2.0.3.ebuild 
b/sci-libs/libcifpp/libcifpp-2.0.3.ebuild
new file mode 100644
index 000..1cbb3962edf
--- /dev/null
+++ b/sci-libs/libcifpp/libcifpp-2.0.3.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit cmake
+
+DESCRIPTION="Code to work with mmCIF and PDB files"
+HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
+SRC_URI="
+   https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz
+   ftp://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz -> 
components-${PV}.cif.gz
+"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64"
+
+IUSE="test"
+RESTRICT="!test? ( test )"
+
+BDEPEND="
+   >=dev-libs/boost-1.70.0:0=[threads(+)]
+"
+DEPEND=""
+RDEPEND=""
+
+src_configure() {
+   cp "${WORKDIR}"/components-${PV}.cif data/components.cif || die
+
+   local mycmakeargs=(
+   -DBUILD_SHARED_LIBS=ON
+   -DCIFPP_BUILD_TESTS="$(usex test)"
+   )
+   cmake_src_configure
+}

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2021-10-10 Thread Sam James 
commit: 0292d84303d0be3815efbf9588b77e9115a6fa3f
Author: Sam James  gentoo  org>
AuthorDate: Sun Oct 10 20:47:46 2021 +
Commit: Sam James  gentoo  org>
CommitDate: Sun Oct 10 20:47:46 2021 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0292d843

sci-libs/libcifpp: Keyword 1.1.1 x86, #811417

Signed-off-by: Sam James  gentoo.org>

 sci-libs/libcifpp/libcifpp-1.1.1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-libs/libcifpp/libcifpp-1.1.1.ebuild 
b/sci-libs/libcifpp/libcifpp-1.1.1.ebuild
index 1f190d58f57..33da8b38c37 100644
--- a/sci-libs/libcifpp/libcifpp-1.1.1.ebuild
+++ b/sci-libs/libcifpp/libcifpp-1.1.1.ebuild
@@ -13,7 +13,7 @@ SRC_URI="
 
 LICENSE="BSD-2"
 SLOT="0"
-KEYWORDS="~amd64"
+KEYWORDS="~amd64 ~x86"
 
 IUSE="test"
 RESTRICT="!test? ( test )"

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2021-10-03 Thread Pacho Ramos 
commit: cd78136faaf47d38b51f0a8526c70e377f22fbd1
Author: Pacho Ramos  gentoo  org>
AuthorDate: Sun Oct  3 18:45:04 2021 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Sun Oct  3 18:45:04 2021 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=cd78136f

sci-libs/libcifpp: Bump to 2.0.0

Package-Manager: Portage-3.0.24, Repoman-3.0.3
Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/Manifest  |  2 ++
 sci-libs/libcifpp/libcifpp-2.0.0.ebuild | 37 +
 2 files changed, 39 insertions(+)

diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index 485b69a8d7a..f4e01d1d6a7 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -1,2 +1,4 @@
 DIST components-1.1.1.cif.gz 80378687 BLAKE2B 
0776d79f733762ad19177bc93a5587e90966a7862f84174ede23a5875ae4633b519168b24b1c02d7afb30f9049d48434921a70c097a7e8238a5745f1676dcc78
 SHA512 
fc68513b37871677beb60855e82ed5831e10b08340697a97bbc7113d4c898b8e8382d097d36793346e34b97f0b5def5312fe7eb81ab4f120ad3908ee8d6d1aa3
+DIST components-2.0.0.cif.gz 80878869 BLAKE2B 
183c1227f403466fa543575243176d84e72bf224a70500876c77a52f0c8e1af80e99ed8cd8b428c7adc822e7006501a0cfc414e60a2896b1f53b98a116e3e4d8
 SHA512 
b1212155b8d6c593593013b1b39b9c711e85c1bf9b68d412dda25720ab94d82ace4445f47f832a66901d0ed5773e2d2cc5dde7a9170b9294c506edd6843d6d66
 DIST libcifpp-1.1.1.tar.gz 978553 BLAKE2B 
750cf80bac769a3db86b3be03924402da0254e69206a15222a5dfaa23a7eadcac1f57eb054f2fc783c287bfed86dab0a75d2994b031cc3cd3c2431a26e250d17
 SHA512 
e74419dada21ea12423c404c34eeb0b410fdb0b26827cd4451375329668909879b6d4795451c6f7c2b2ffc8d282dfcff2f1800630a3487111404335be4cb338f
+DIST libcifpp-2.0.0.tar.gz 996947 BLAKE2B 
58568f18b17d79d8f3e2487035b505d814e0343bb56a2b18665651a3788b54d5330309c3c27b6f4636ab5e9bf3f85ebdb1a4fc8ed67adc7941559c481135f873
 SHA512 
8ca3f0445dad758f7fd63a0039fbe3267420d2b51036cd67a38d925b498c8ac580b86a9900317c63b4705a4a9fc9c3ef1036d40fd3f20f8eff2d6e6e5da7b735

diff --git a/sci-libs/libcifpp/libcifpp-2.0.0.ebuild 
b/sci-libs/libcifpp/libcifpp-2.0.0.ebuild
new file mode 100644
index 000..1f190d58f57
--- /dev/null
+++ b/sci-libs/libcifpp/libcifpp-2.0.0.ebuild
@@ -0,0 +1,37 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit cmake
+
+DESCRIPTION="Code to work with mmCIF and PDB files"
+HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
+SRC_URI="
+   https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz
+   ftp://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz -> 
components-${PV}.cif.gz
+"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64"
+
+IUSE="test"
+RESTRICT="!test? ( test )"
+
+BDEPEND="
+   >=dev-libs/boost-1.70.0:0=[threads(+)]
+"
+DEPEND=""
+RDEPEND=""
+
+src_configure() {
+   mkdir data || die
+   cp "${WORKDIR}"/components-${PV}.cif data/components.cif || die
+
+   local mycmakeargs=(
+   -DBUILD_SHARED_LIBS=ON
+   -DUSE_RSRC=OFF
+   -DCIFPP_BUILD_TESTS="$(usex test)"
+   )
+   cmake_src_configure
+}

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2021-09-26 Thread Pacho Ramos 
commit: 603cb9ed7ccaba2c35817defa03a482dce81a6b0
Author: Pacho Ramos  gentoo  org>
AuthorDate: Sun Sep 26 10:17:55 2021 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Sun Sep 26 10:17:55 2021 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=603cb9ed

sci-libs/libcifpp: Fix QA warnings

Closes: https://bugs.gentoo.org/814890
Thanks-to: Sam James
Package-Manager: Portage-3.0.22, Repoman-3.0.3
Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/libcifpp-1.1.1.ebuild | 6 --
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/sci-libs/libcifpp/libcifpp-1.1.1.ebuild 
b/sci-libs/libcifpp/libcifpp-1.1.1.ebuild
index 63a6e309a1b..1f190d58f57 100644
--- a/sci-libs/libcifpp/libcifpp-1.1.1.ebuild
+++ b/sci-libs/libcifpp/libcifpp-1.1.1.ebuild
@@ -1,8 +1,8 @@
 # Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=7
-inherit cmake tmpfiles
+EAPI=8
+inherit cmake
 
 DESCRIPTION="Code to work with mmCIF and PDB files"
 HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
@@ -14,7 +14,9 @@ SRC_URI="
 LICENSE="BSD-2"
 SLOT="0"
 KEYWORDS="~amd64"
+
 IUSE="test"
+RESTRICT="!test? ( test )"
 
 BDEPEND="
>=dev-libs/boost-1.70.0:0=[threads(+)]

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/files/, sci-libs/libcifpp/

2021-09-02 Thread Pacho Ramos 
commit: e27750f581939d1afde642cad11424964a77712c
Author: Pacho Ramos  gentoo  org>
AuthorDate: Thu Sep  2 11:42:19 2021 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Thu Sep  2 12:00:41 2021 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e27750f5

sci-libs/libcifpp: Drop old

Package-Manager: Portage-3.0.22, Repoman-3.0.3
Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/Manifest |  1 -
 .../files/libcifpp-1.0.1_p20210810-destdir.patch   | 38 -
 sci-libs/libcifpp/files/libcifpp.conf  |  1 -
 sci-libs/libcifpp/libcifpp-1.0.1_p20210810.ebuild  | 48 --
 4 files changed, 88 deletions(-)

diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index 4085ab97716..485b69a8d7a 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -1,3 +1,2 @@
 DIST components-1.1.1.cif.gz 80378687 BLAKE2B 
0776d79f733762ad19177bc93a5587e90966a7862f84174ede23a5875ae4633b519168b24b1c02d7afb30f9049d48434921a70c097a7e8238a5745f1676dcc78
 SHA512 
fc68513b37871677beb60855e82ed5831e10b08340697a97bbc7113d4c898b8e8382d097d36793346e34b97f0b5def5312fe7eb81ab4f120ad3908ee8d6d1aa3
-DIST libcifpp-1.0.1_p20210810.tar.gz 1308632 BLAKE2B 
5ceacd1adfd75873266384d8f4f7dbd02737d4935c0506c54a925826b6c391950c68ad7174023894d3bf0f62e4d4d3790149f003113947e546bdd35b706d97b8
 SHA512 
7d9a914b032ac57992200b33968686dcf300230721aa96ae72fe23ce1ba403d8102eb7ba1819e6ab72b238f5d858c48da2d653540f33791d77d9d18cba275eb7
 DIST libcifpp-1.1.1.tar.gz 978553 BLAKE2B 
750cf80bac769a3db86b3be03924402da0254e69206a15222a5dfaa23a7eadcac1f57eb054f2fc783c287bfed86dab0a75d2994b031cc3cd3c2431a26e250d17
 SHA512 
e74419dada21ea12423c404c34eeb0b410fdb0b26827cd4451375329668909879b6d4795451c6f7c2b2ffc8d282dfcff2f1800630a3487111404335be4cb338f

diff --git a/sci-libs/libcifpp/files/libcifpp-1.0.1_p20210810-destdir.patch 
b/sci-libs/libcifpp/files/libcifpp-1.0.1_p20210810-destdir.patch
deleted file mode 100644
index b0c9c1679ad..000
--- a/sci-libs/libcifpp/files/libcifpp-1.0.1_p20210810-destdir.patch
+++ /dev/null
@@ -1,38 +0,0 @@
 a/GNUmakefile.in.old   2021-08-31 11:37:44.381788404 +0200
-+++ b/GNUmakefile.in   2021-08-31 11:39:12.924885425 +0200
-@@ -43,18 +43,18 @@
- 
- prefix= $(DESTDIR)@prefix@
- exec_prefix   = @exec_prefix@
--libdir= @libdir@
-+libdir= $(DESTDIR)@libdir@
- includedir= @includedir@
- datarootdir   = @datarootdir@
--datadir   = @datadir@
--docdir= @docdir@
-+datadir   = $(DESTDIR)@datadir@
-+docdir= $(DESTDIR)@docdir@
- pkgconfigdir  = $(libdir)/pkgconfig
- 
- CCP4DIR   = @CCP4@
- CLIBD = $(CCP4DIR:%=%/lib/data)
- 
- CACHE_DIR = $(DESTDIR)@DATA_CACHE_DIR@
--DATA_DIR  = @DATA_LIB_DIR@
-+DATA_DIR  = $(DESTDIR)@DATA_LIB_DIR@
- CRON_DIR  = $(DESTDIR)/etc/cron.weekly
- 
- DEFINES   += CACHE_DIR='"$(CACHE_DIR)"' 
DATA_DIR='"$(DATA_DIR)"'
-@@ -288,9 +288,9 @@
-   done
-   install -d $(CACHE_DIR)
-   install -d $(CRON_DIR)
--  if [ ! -f /etc/libcifpp.conf ] ; then \
--  echo "# Uncomment the next line to enable automatic updates" > 
/etc/libcifpp.conf; \
--  echo "# update=true" >> /etc/libcifpp.conf; \
-+  if [ ! -f $(DESTDIR)/etc/libcifpp.conf ] ; then \
-+  echo "# Uncomment the next line to enable automatic updates" > 
$(DESTDIR)/etc/libcifpp.conf; \
-+  echo "# update=true" >> $(DESTDIR)/etc/libcifpp.conf; \
-   echo ""; \
-   echo "Update the /etc/libcifpp.conf file to enable automatic 
updates"; \
-   echo ""; \

diff --git a/sci-libs/libcifpp/files/libcifpp.conf 
b/sci-libs/libcifpp/files/libcifpp.conf
deleted file mode 100644
index 34e36c82076..000
--- a/sci-libs/libcifpp/files/libcifpp.conf
+++ /dev/null
@@ -1 +0,0 @@
-d /var/cache/libcifpp 0777 root root -
\ No newline at end of file

diff --git a/sci-libs/libcifpp/libcifpp-1.0.1_p20210810.ebuild 
b/sci-libs/libcifpp/libcifpp-1.0.1_p20210810.ebuild
deleted file mode 100644
index d57b6fef476..000
--- a/sci-libs/libcifpp/libcifpp-1.0.1_p20210810.ebuild
+++ /dev/null
@@ -1,48 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-inherit tmpfiles
-
-DESCRIPTION="Code to work with mmCIF and PDB files"
-HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
-#SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz"
-
-COMMIT="ec91d0fb222810af0d8a9f7b0810fe7661d227ca"

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/

2021-09-02 Thread Pacho Ramos 
commit: a14ca5337d196857025c27a5d51832a225323e83
Author: Pacho Ramos  gentoo  org>
AuthorDate: Thu Sep  2 11:41:53 2021 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Thu Sep  2 12:00:39 2021 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a14ca533

sci-libs/libcifpp: Bump to 1.1.1

Package-Manager: Portage-3.0.22, Repoman-3.0.3
Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/Manifest  |  2 ++
 sci-libs/libcifpp/libcifpp-1.1.1.ebuild | 35 +
 2 files changed, 37 insertions(+)

diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
index 3744a9f5c5d..4085ab97716 100644
--- a/sci-libs/libcifpp/Manifest
+++ b/sci-libs/libcifpp/Manifest
@@ -1 +1,3 @@
+DIST components-1.1.1.cif.gz 80378687 BLAKE2B 
0776d79f733762ad19177bc93a5587e90966a7862f84174ede23a5875ae4633b519168b24b1c02d7afb30f9049d48434921a70c097a7e8238a5745f1676dcc78
 SHA512 
fc68513b37871677beb60855e82ed5831e10b08340697a97bbc7113d4c898b8e8382d097d36793346e34b97f0b5def5312fe7eb81ab4f120ad3908ee8d6d1aa3
 DIST libcifpp-1.0.1_p20210810.tar.gz 1308632 BLAKE2B 
5ceacd1adfd75873266384d8f4f7dbd02737d4935c0506c54a925826b6c391950c68ad7174023894d3bf0f62e4d4d3790149f003113947e546bdd35b706d97b8
 SHA512 
7d9a914b032ac57992200b33968686dcf300230721aa96ae72fe23ce1ba403d8102eb7ba1819e6ab72b238f5d858c48da2d653540f33791d77d9d18cba275eb7
+DIST libcifpp-1.1.1.tar.gz 978553 BLAKE2B 
750cf80bac769a3db86b3be03924402da0254e69206a15222a5dfaa23a7eadcac1f57eb054f2fc783c287bfed86dab0a75d2994b031cc3cd3c2431a26e250d17
 SHA512 
e74419dada21ea12423c404c34eeb0b410fdb0b26827cd4451375329668909879b6d4795451c6f7c2b2ffc8d282dfcff2f1800630a3487111404335be4cb338f

diff --git a/sci-libs/libcifpp/libcifpp-1.1.1.ebuild 
b/sci-libs/libcifpp/libcifpp-1.1.1.ebuild
new file mode 100644
index 000..63a6e309a1b
--- /dev/null
+++ b/sci-libs/libcifpp/libcifpp-1.1.1.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+inherit cmake tmpfiles
+
+DESCRIPTION="Code to work with mmCIF and PDB files"
+HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
+SRC_URI="
+   https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz
+   ftp://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz -> 
components-${PV}.cif.gz
+"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="test"
+
+BDEPEND="
+   >=dev-libs/boost-1.70.0:0=[threads(+)]
+"
+DEPEND=""
+RDEPEND=""
+
+src_configure() {
+   mkdir data || die
+   cp "${WORKDIR}"/components-${PV}.cif data/components.cif || die
+
+   local mycmakeargs=(
+   -DBUILD_SHARED_LIBS=ON
+   -DUSE_RSRC=OFF
+   -DCIFPP_BUILD_TESTS="$(usex test)"
+   )
+   cmake_src_configure
+}

[gentoo-commits] repo/gentoo:master commit in: sci-libs/libcifpp/, sci-libs/libcifpp/files/

2021-09-02 Thread Pacho Ramos 
commit: 02f76ba29e10ddb902ccaeca6528280794f3622e
Author: Pacho Ramos  gentoo  org>
AuthorDate: Thu Sep  2 06:49:50 2021 +
Commit: Pacho Ramos  gentoo  org>
CommitDate: Thu Sep  2 12:00:36 2021 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=02f76ba2

sci-libs/libcifpp: Add libcifpp for latest dssp versions

Package-Manager: Portage-3.0.22, Repoman-3.0.3
Signed-off-by: Pacho Ramos  gentoo.org>

 sci-libs/libcifpp/Manifest |  1 +
 .../files/libcifpp-1.0.1_p20210810-destdir.patch   | 38 +
 sci-libs/libcifpp/files/libcifpp.conf  |  1 +
 sci-libs/libcifpp/libcifpp-1.0.1_p20210810.ebuild  | 48 ++
 sci-libs/libcifpp/metadata.xml |  7 
 5 files changed, 95 insertions(+)

diff --git a/sci-libs/libcifpp/Manifest b/sci-libs/libcifpp/Manifest
new file mode 100644
index 000..3744a9f5c5d
--- /dev/null
+++ b/sci-libs/libcifpp/Manifest
@@ -0,0 +1 @@
+DIST libcifpp-1.0.1_p20210810.tar.gz 1308632 BLAKE2B 
5ceacd1adfd75873266384d8f4f7dbd02737d4935c0506c54a925826b6c391950c68ad7174023894d3bf0f62e4d4d3790149f003113947e546bdd35b706d97b8
 SHA512 
7d9a914b032ac57992200b33968686dcf300230721aa96ae72fe23ce1ba403d8102eb7ba1819e6ab72b238f5d858c48da2d653540f33791d77d9d18cba275eb7

diff --git a/sci-libs/libcifpp/files/libcifpp-1.0.1_p20210810-destdir.patch 
b/sci-libs/libcifpp/files/libcifpp-1.0.1_p20210810-destdir.patch
new file mode 100644
index 000..b0c9c1679ad
--- /dev/null
+++ b/sci-libs/libcifpp/files/libcifpp-1.0.1_p20210810-destdir.patch
@@ -0,0 +1,38 @@
+--- a/GNUmakefile.in.old   2021-08-31 11:37:44.381788404 +0200
 b/GNUmakefile.in   2021-08-31 11:39:12.924885425 +0200
+@@ -43,18 +43,18 @@
+ 
+ prefix= $(DESTDIR)@prefix@
+ exec_prefix   = @exec_prefix@
+-libdir= @libdir@
++libdir= $(DESTDIR)@libdir@
+ includedir= @includedir@
+ datarootdir   = @datarootdir@
+-datadir   = @datadir@
+-docdir= @docdir@
++datadir   = $(DESTDIR)@datadir@
++docdir= $(DESTDIR)@docdir@
+ pkgconfigdir  = $(libdir)/pkgconfig
+ 
+ CCP4DIR   = @CCP4@
+ CLIBD = $(CCP4DIR:%=%/lib/data)
+ 
+ CACHE_DIR = $(DESTDIR)@DATA_CACHE_DIR@
+-DATA_DIR  = @DATA_LIB_DIR@
++DATA_DIR  = $(DESTDIR)@DATA_LIB_DIR@
+ CRON_DIR  = $(DESTDIR)/etc/cron.weekly
+ 
+ DEFINES   += CACHE_DIR='"$(CACHE_DIR)"' 
DATA_DIR='"$(DATA_DIR)"'
+@@ -288,9 +288,9 @@
+   done
+   install -d $(CACHE_DIR)
+   install -d $(CRON_DIR)
+-  if [ ! -f /etc/libcifpp.conf ] ; then \
+-  echo "# Uncomment the next line to enable automatic updates" > 
/etc/libcifpp.conf; \
+-  echo "# update=true" >> /etc/libcifpp.conf; \
++  if [ ! -f $(DESTDIR)/etc/libcifpp.conf ] ; then \
++  echo "# Uncomment the next line to enable automatic updates" > 
$(DESTDIR)/etc/libcifpp.conf; \
++  echo "# update=true" >> $(DESTDIR)/etc/libcifpp.conf; \
+   echo ""; \
+   echo "Update the /etc/libcifpp.conf file to enable automatic 
updates"; \
+   echo ""; \

diff --git a/sci-libs/libcifpp/files/libcifpp.conf 
b/sci-libs/libcifpp/files/libcifpp.conf
new file mode 100644
index 000..34e36c82076
--- /dev/null
+++ b/sci-libs/libcifpp/files/libcifpp.conf
@@ -0,0 +1 @@
+d /var/cache/libcifpp 0777 root root -
\ No newline at end of file

diff --git a/sci-libs/libcifpp/libcifpp-1.0.1_p20210810.ebuild 
b/sci-libs/libcifpp/libcifpp-1.0.1_p20210810.ebuild
new file mode 100644
index 000..d57b6fef476
--- /dev/null
+++ b/sci-libs/libcifpp/libcifpp-1.0.1_p20210810.ebuild
@@ -0,0 +1,48 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+inherit tmpfiles
+
+DESCRIPTION="Code to work with mmCIF and PDB files"
+HOMEPAGE="https://github.com/PDB-REDO/libcifpp;
+#SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> 
${P}.tar.gz"
+
+COMMIT="ec91d0fb222810af0d8a9f7b0810fe7661d227ca"
+SRC_URI="https://github.com/PDB-REDO/${PN}/archive/${COMMIT}.tar.gz -> 
${P}.tar.gz"
+S="${WORKDIR}/${PN}-${COMMIT}"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+BDEPEND="
+   >=dev-libs/boost-1.71:0=
+"
+DEPEND=""
+RDEPEND=""
+
+PATCHES=(
+   # https://github.com/PDB-REDO/libcifpp/issues/4
+   "${FILESDIR}/${P}-destdir.patch"
+)
+
+src_configure() {
+   econf \
+   --disable-download-ccd \
+   --disable-revision \
+   --disable-static
+}
+
+src_install() {
+   default
+   find "${ED}" -name '*.la' -delete