Hi all,
Let's say I created a pdb of a B-DNA Double-Helix with amber tools. Now
I would like to have a topology in which the last residues are bonded to
the first. How can I do that expect of actually mess together a topology
file by self written scripts and/or handwork? Also if create helix
strings without substituting the terminal phosphate pdb2gmx doesn't seem
to accept it.
Thanks for any hints,
W.Müller
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