Re: [gmx-users] Proteins with ADP & ATP cofactors
Dear Stephan, thank you for your reply. I'm performing some test with antechamber for a de-novo parametrization, hope to see some good results with it. > You probably have to do a hand job. Look at the .itp/top files and then the force field parmeters, here's not many atoms, so it would take only a couple hours. -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
[gmx-users] Proteins with ADP & ATP cofactors
Dear all, Does anybody have the parameters files for ATP and ADP for the AMBER03 ff? Alternatively, I know that I can find the corresponding files on the AMBER package web-site http://www.pharmacy.manchester.ac.uk/bryce/amber#cof but I don't know how convert these files so I can use them with GROMACS. There are several emails on this mailing-list concerning my request, but I can't find a reply which clearly address the problem. Thank you -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
