Re: [gmx-users] Fatal error: Attempting to read a checkpoint file of version 12 with code of version 4
On 30/04/2011 11:37 PM, Faezeh Kargar wrote: On 4/30/2011 7:22 PM, Faezeh Kargar wrote: Dear gmx users, My code stops running because of electricity voltage oscillation. it happened for several times and each time I restarted running my code. but for this time with command mdrun -s topol.tpr -x traj.part0002.part0003.part0004.part0004.part0005.xtc -cpi state.cpt -e ener.part0002.part0003.part0004.part0004.part0005.edr -g md.part0002.part0003.part0004.part0004.part0005.log I used this command before without any error. but now I encountered error like this: Program mdrun, VERSION 4.0.7 Source code file: checkpoint.c, line: 565 Fatal error: Attempting to read a checkpoint file of version 12 with code of version 4 I looked at the file checkpoint.c. at first the version of checkpoint file is 4 but I do not know how and why it changes. The usual reason for this kind of error is that you're using an old version of GROMACS to access a file written by a new version. That's not a good idea. Mark Thank you for your reply. I just use version 4.0.7 of GROMACS and all of files are written by this version. as I said before, I could restart running of my codes with this command without any problem. Version 12 is that used in 4.5.x, so I think you are using that version. Someone may have changed the software and not told you about it (in which case, tell them to stop wasting people's time). Or you've migrated files from one place to another, or something similar. Mark -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
Re: [gmx-users] Fatal error: Attempting to read a checkpoint file of version 12 with code of version 4
htmldiv Thank you very much for your reply. could you please tell me if there is any way to solve this problem and restart running the code? Karagr On 30/04/2011 11:37 PM, Faezeh Kargar wrote: On 4/30/2011 7:22 PM, Faezeh Kargar wrote: Dear gmx users, My code stops running because of electricity voltage oscillation. it happened for several times and each time I restarted running my code. but for this time with command mdrun -s topol.tpr -x traj.part0002.part0003.part0004.part0004.part0005.xtc -cpi state.cpt -e ener.part0002.part0003.part0004.part0004.part0005.edr -g md.part0002.part0003.part0004.part0004.part0005.log I used this command before without any error. but now I encountered error like this: Program mdrun, VERSION 4.0.7 Source code file: checkpoint.c, line: 565 Fatal error: Attempting to read a checkpoint file of version 12 with code of version 4 I looked at the file checkpoint.c. at first the version of checkpoint file is 4 but I do not know how and why it changes. The usual reason for this kind of error is that you're using an old version of GROMACS to access a file written by a new version. That's not a good idea. Mark Thank you for your reply. I just use version 4.0.7 of GROMACS and all of files are written by this version. as I said before, I could restart running of my codes with this command without any problem. Version 12 is that used in 4.5.x, so I think you are using that version. Someone may have changed the software and not told you about it (in which case, tell them to stop wasting people's time). Or you've migrated files from one place to another, or something similar. Mark -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. -- 83_kargar -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
Re: [gmx-users] Fatal error: Attempting to read a checkpoint file of version 12 with code of version 4
On 1/05/2011 11:48 PM, Faezeh Kargar wrote: Thank you very much for your reply. could you please tell me if there is any way to solve this problem and restart running the code? If my theory is right, keep using the same installation of GROMACS 4.5. Talk to whoever manages your system about what may have happened. I'm not going to keep re-iterating my guess or predicating further discussion upon it :-) Mark Karagr On 30/04/2011 11:37 PM, Faezeh Kargar wrote: On 4/30/2011 7:22 PM, Faezeh Kargar wrote: Dear gmx users, My code stops running because of electricity voltage oscillation. it happened for several times and each time I restarted running my code. but for this time with command mdrun -s topol.tpr -x traj.part0002.part0003.part0004.part0004.part0005.xtc -cpi state.cpt -e ener.part0002.part0003.part0004.part0004.part0005.edr -g md.part0002.part0003.part0004.part0004.part0005.log I used this command before without any error. but now I encountered error like this: Program mdrun, VERSION 4.0.7 Source code file: checkpoint.c, line: 565 Fatal error: Attempting to read a checkpoint file of version 12 with code of version 4 I looked at the file checkpoint.c. at first the version of checkpoint file is 4 but I do not know how and why it changes. The usual reason for this kind of error is that you're using an old version of GROMACS to access a file written by a new version. That's not a good idea. Mark Thank you for your reply. I just use version 4.0.7 of GROMACS and all of files are written by this version. as I said before, I could restart running of my codes with this command without any problem. Version 12 is that used in 4.5.x, so I think you are using that version. Someone may have changed the software and not told you about it (in which case, tell them to stop wasting people's time). Or you've migrated files from one place to another, or something similar. Mark -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. -- 83_kargar -- This message has been scanned for viruses and dangerous content by *MailScanner* http://www.mailscanner.info/, and is believed to be clean. -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
[gmx-users] Fatal error: Attempting to read a checkpoint file of version 12 with code of version 4
×M5~˪yïxã]¹ß]7ãMuÓ Program mdrun, VERSION 4.0.7Source code file: checkpoint.c, line: 565Fatal error:Attempting to read a checkpoint file of version 12 with code of version 4-- 83_kargar-- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
Re: [gmx-users] Fatal error: Attempting to read a checkpoint file of version 12 with code of version 4
On 4/30/2011 7:22 PM, Faezeh Kargar wrote: Dear gmx users, My code stops running because of electricity voltage oscillation. it happened for several times and each time I restarted running my code. but for this time with command mdrun -s topol.tpr -x traj.part0002.part0003.part0004.part0004.part0005.xtc -cpi state.cpt -e ener.part0002.part0003.part0004.part0004.part0005.edr -g md.part0002.part0003.part0004.part0004.part0005.log I used this command before without any error. but now I encountered error like this: Program mdrun, VERSION 4.0.7 Source code file: checkpoint.c, line: 565 Fatal error: Attempting to read a checkpoint file of version 12 with code of version 4 I looked at the file checkpoint.c. at first the version of checkpoint file is 4 but I do not know how and why it changes. The usual reason for this kind of error is that you're using an old version of GROMACS to access a file written by a new version. That's not a good idea. Mark -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
Re: [gmx-users] Fatal error: Attempting to read a checkpoint file of version 12 with code of version 4
htmldiv On 4/30/2011 7:22 PM, Faezeh Kargar wrote: Dear gmx users, My code stops running because of electricity voltage oscillation. it happened for several times and each time I restarted running my code. but for this time with command mdrun -s topol.tpr -x traj.part0002.part0003.part0004.part0004.part0005.xtc -cpi state.cpt -e ener.part0002.part0003.part0004.part0004.part0005.edr -g md.part0002.part0003.part0004.part0004.part0005.log I used this command before without any error. but now I encountered error like this: Program mdrun, VERSION 4.0.7 Source code file: checkpoint.c, line: 565 Fatal error: Attempting to read a checkpoint file of version 12 with code of version 4 I looked at the file checkpoint.c. at first the version of checkpoint file is 4 but I do not know how and why it changes. The usual reason for this kind of error is that you're using an old version of GROMACS to access a file written by a new version. That's not a good idea. Mark Thank you for your reply. I just use version 4.0.7 of GROMACS and all of files are written by this version. as I said before, I could restart running of my codes with this command without any problem. Thank you -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. -- 83_kargar -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
