Hello, After running an AFM or Constraint pull simulation, I am looking to generate a force distance curve between the pulled group and the reference group. Any suggestions on how to do this? Currently I am doing it manually by generating a .pdb movie of the entire pulling, and extracting the distance between the two groups via coordinates in the .pdb at specified time points. I then compare the distance at that time point with the force for that time point in the .pdo file. As you might imagine, this is very time consuming. Does Gromacs have a command to do this for you? Thanks.
______________________________ Venkatesh Hariharan Pennsylvania State University Schreyer Honors College Undergraduate - Bioengineering "You must be the change you wish to see in the world." --Mohandas Karamchand Gandhi
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