Hi Tang Jiaowei,
g_hbond takes periodicity into account, like most tools do. Do note
that this doesn't work if you've performed rotational transformations
(lsq-fitting).
Cheers,
Tsjerk
On 9/28/07, tangxuan [EMAIL PROTECTED] wrote:
Hi all,
Does periodic boundary affect the calculation of hydrogen bond if my
protein is not in one box? What about other calculations?
Thank you,
Tang jiaowei
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Tsjerk A. Wassenaar, Ph.D.
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Biomolecular NMR, Bijvoet Center
Utrecht University
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