[gmx-users] Gromacs 4.0.6 installation error
I was following the instruction to install gromacs 4.0.6 on my machine. ./configure --enable-threads --enable-float --enable-sse --prefix=[mypath] make make install The configure looks ok but no Makefile is generated. When I do make or make install, it gives me the error: make: *** No targets specified and no makefile found. Stop. There are couple makefiles in the directory though, Makefile.in and Makefile.am, do I need to rename one of them to Makefile to make it work? Dian -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
Re: [gmx-users] Gromacs 4.0.6 installation error
Dian Jiao wrote: I was following the instruction to install gromacs 4.0.6 on my machine. ./configure --enable-threads --enable-float --|enable-sse --prefix=[mypath]| make make install The configure looks ok but no Makefile is generated. When I do make or make install, it gives me the error: make: *** No targets specified and no makefile found. Stop. There are couple makefiles in the directory though, Makefile.in and Makefile.am, do I need to rename one of them to Makefile to make it work? Per the warning on the Gromacs homepage, version 4.0.6 is a broken distribution. Use version 4.0.7 instead. -Justin Dian -- Justin A. Lemkul Ph.D. Candidate ICTAS Doctoral Scholar MILES-IGERT Trainee Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
Re: [gmx-users] Gromacs 4.0.6 installation error
Actually, I tried 4.0.7 first from this link, http://www.gromacs.org/index.php?title=Download_%26_Installation It didn't work (same error). That's why I downloaded 4.0.6 from the same webpage. On Fri, Mar 5, 2010 at 10:51 AM, Justin A. Lemkul jalem...@vt.edu wrote: Dian Jiao wrote: I was following the instruction to install gromacs 4.0.6 on my machine. ./configure --enable-threads --enable-float --|enable-sse --prefix=[mypath]| make make install The configure looks ok but no Makefile is generated. When I do make or make install, it gives me the error: make: *** No targets specified and no makefile found. Stop. There are couple makefiles in the directory though, Makefile.in and Makefile.am, do I need to rename one of them to Makefile to make it work? Per the warning on the Gromacs homepage, version 4.0.6 is a broken distribution. Use version 4.0.7 instead. -Justin Dian -- Justin A. Lemkul Ph.D. Candidate ICTAS Doctoral Scholar MILES-IGERT Trainee Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
Re: [gmx-users] Gromacs 4.0.6 installation error
Dian Jiao wrote: Actually, I tried 4.0.7 first from this link, http://www.gromacs.org/index.php?title=Download_%26_Installation It didn't work (same error). That's why I downloaded 4.0.6 from the same webpage. Well, downgrading is usually not the answer, especially if you're downgrading to a broken distribution. Maybe this should be removed from the downloads page... In any case, if a Makefile wasn't generated, then the configuration can't be OK. Some error must have come up. Check the screen output and config.log, if necessary. Once you have an actual error message, you stand to get better advice on how to fix it. -Justin On Fri, Mar 5, 2010 at 10:51 AM, Justin A. Lemkul jalem...@vt.edu mailto:jalem...@vt.edu wrote: Dian Jiao wrote: I was following the instruction to install gromacs 4.0.6 on my machine. ./configure --enable-threads --enable-float --|enable-sse --prefix=[mypath]| make make install The configure looks ok but no Makefile is generated. When I do make or make install, it gives me the error: make: *** No targets specified and no makefile found. Stop. There are couple makefiles in the directory though, Makefile.in and Makefile.am, do I need to rename one of them to Makefile to make it work? Per the warning on the Gromacs homepage, version 4.0.6 is a broken distribution. Use version 4.0.7 instead. -Justin Dian -- Justin A. Lemkul Ph.D. Candidate ICTAS Doctoral Scholar MILES-IGERT Trainee Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu http://vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin -- gmx-users mailing listgmx-users@gromacs.org mailto:gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org mailto:gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php -- Justin A. Lemkul Ph.D. Candidate ICTAS Doctoral Scholar MILES-IGERT Trainee Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
Re: [gmx-users] Gromacs 4.0.6 installation error
On 6/03/2010 5:05 AM, Dian Jiao wrote: Actually, I tried 4.0.7 first from this link, http://www.gromacs.org/index.php?title=Download_%26_Installation It didn't work (same error). That's why I downloaded 4.0.6 from the same webpage. On Fri, Mar 5, 2010 at 10:51 AM, Justin A. Lemkul jalem...@vt.edu mailto:jalem...@vt.edu wrote: Dian Jiao wrote: I was following the instruction to install gromacs 4.0.6 on my machine. ./configure --enable-threads --enable-float --|enable-sse --prefix=[mypath]| Don't enable threads. Do follow an actual installation guide like on the GROMACS webpage. Mark make make install The configure looks ok but no Makefile is generated. When I do make or make install, it gives me the error: make: *** No targets specified and no makefile found. Stop. There are couple makefiles in the directory though, Makefile.in and Makefile.am, do I need to rename one of them to Makefile to make it work? Per the warning on the Gromacs homepage, version 4.0.6 is a broken distribution. Use version 4.0.7 instead. -Justin Dian -- Justin A. Lemkul Ph.D. Candidate ICTAS Doctoral Scholar MILES-IGERT Trainee Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu http://vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin -- gmx-users mailing list gmx-users@gromacs.org mailto:gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org mailto:gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
Re: [gmx-users] Gromacs 4.0.6 installation error
I got it to work finally. Didn't install fftw earlier. Thanks. On Fri, Mar 5, 2010 at 4:02 PM, Mark Abraham mark.abra...@anu.edu.auwrote: On 6/03/2010 5:05 AM, Dian Jiao wrote: Actually, I tried 4.0.7 first from this link, http://www.gromacs.org/index.php?title=Download_%26_Installation It didn't work (same error). That's why I downloaded 4.0.6 from the same webpage. On Fri, Mar 5, 2010 at 10:51 AM, Justin A. Lemkul jalem...@vt.edu mailto:jalem...@vt.edu wrote: Dian Jiao wrote: I was following the instruction to install gromacs 4.0.6 on my machine. ./configure --enable-threads --enable-float --|enable-sse --prefix=[mypath]| Don't enable threads. Do follow an actual installation guide like on the GROMACS webpage. Mark make make install The configure looks ok but no Makefile is generated. When I do make or make install, it gives me the error: make: *** No targets specified and no makefile found. Stop. There are couple makefiles in the directory though, Makefile.in and Makefile.am, do I need to rename one of them to Makefile to make it work? Per the warning on the Gromacs homepage, version 4.0.6 is a broken distribution. Use version 4.0.7 instead. -Justin Dian -- Justin A. Lemkul Ph.D. Candidate ICTAS Doctoral Scholar MILES-IGERT Trainee Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu http://vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin -- gmx-users mailing list gmx-users@gromacs.org mailto:gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org mailto:gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
