If you want the residues in a particular secondary structure, you can use
do_dssp, see http://manual.gromacs.org/current/online/do_dssp.html .
g_hbonds can calculate hydrogen bonds. To separate the h-bonds by secondary
structure, I suppose some scripting is needed.
2013/8/16 balu balu2...@vit.ac.in
http://gromacs.5086.x6.nabble.com/file/n5010545/ss.png
Can anyone suggest me to calculate the number of alpha-, 3-10, pi-helical
hydrogen bonds in protein using gromacs.
Is there any particular commands in gromacs, please let me know...
Thank you...
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