Re: [gmx-users] Installing Extended Genbox

2013-10-01 Thread Mark Abraham 
Since that patch is already merged, Tegar can just check out the (default)
master branch - see http://www.gromacs.org/Developer_Zone/Git. The CMake
build works the same way. I would suggest just using
/bin/genbox once you have built it, i.e. do not go to
the trouble of installing the development version. You should prefer to use
the normal versions of all the tools unless you want to live on the edge!

Mark


On Tue, Oct 1, 2013 at 5:01 PM, Justin Lemkul  wrote:

>
>
> On 10/1/13 10:58 AM, Tegar Nurwahyu Wijaya wrote:
>
>> Hi Mark,
>>
>> Thank you for your reply. Actually I am not trying to add it to the
>> repository.
>>
>> I have gromacs 4.6 installed in my computer. When I was trying using
>> genbox, an error occurred caused by memory lacking. After searched this
>> mailing list, I got that extended genbox code that can fix my problem. But
>> I don't know how to put that code into my installed gromacs 4.6. Do you or
>> anybody know how to do that?
>>
>>
> You need to clone the git repository (i.e. the development code) and then
> apply the patch with the instructions at the link Mark sent you.  Further
> up on the page is how you get started in terms of obtaining the development
> code from git.  It is unwise to try to apply a patch from the master branch
> on version 4.6; I doubt it would even work.
>
> -Justin
>
>
>  Regards,
>> Tegar
>>
>>
>> On Tue, Oct 1, 2013 at 10:12 AM, Mark Abraham *
>> *wrote:
>>
>>  I would generally not try to add it to an existing source repository.
>>> Instead, follow one of the suggestions in
>>>
>>> http://www.gromacs.org/**Developer_Zone/Git/Gerrit#How_**
>>> do_I_get_a_copy_of_my_commit_**for_which_someone_else_has_**
>>> uploaded_a_patch.3f
>>> to
>>> check out that version.
>>>
>>> Mark
>>>
>>>
>>> On Tue, Oct 1, 2013 at 6:24 AM, Tegar Nurwahyu Wijaya <
>>> tnurwahyuwij...@gmail.com> wrote:
>>>
>>>  Dear all,

 I want to install Extended Genbox from gerrit.

 https://gerrit.gromacs.org/#/**c/1175/

 How can I put this code into my existing gromacs installation?

 Thanks.

 Regards,
 Tegar
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> --
> ==**
>
> Justin A. Lemkul, Ph.D.
> Postdoctoral Fellow
>
> Department of Pharmaceutical Sciences
> School of Pharmacy
> Health Sciences Facility II, Room 601
> University of Maryland, Baltimore
> 20 Penn St.
> Baltimore, MD 21201
>
> jalemkul@outerbanks.umaryland.**edu  |
> (410) 706-7441
>
> ==**
>
> --
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Re: [gmx-users] Installing Extended Genbox

2013-10-01 Thread Justin Lemkul 



On 10/1/13 10:58 AM, Tegar Nurwahyu Wijaya wrote:

Hi Mark,

Thank you for your reply. Actually I am not trying to add it to the
repository.

I have gromacs 4.6 installed in my computer. When I was trying using
genbox, an error occurred caused by memory lacking. After searched this
mailing list, I got that extended genbox code that can fix my problem. But
I don't know how to put that code into my installed gromacs 4.6. Do you or
anybody know how to do that?



You need to clone the git repository (i.e. the development code) and then apply 
the patch with the instructions at the link Mark sent you.  Further up on the 
page is how you get started in terms of obtaining the development code from git. 
 It is unwise to try to apply a patch from the master branch on version 4.6; I 
doubt it would even work.


-Justin


Regards,
Tegar


On Tue, Oct 1, 2013 at 10:12 AM, Mark Abraham wrote:


I would generally not try to add it to an existing source repository.
Instead, follow one of the suggestions in

http://www.gromacs.org/Developer_Zone/Git/Gerrit#How_do_I_get_a_copy_of_my_commit_for_which_someone_else_has_uploaded_a_patch.3f
to
check out that version.

Mark


On Tue, Oct 1, 2013 at 6:24 AM, Tegar Nurwahyu Wijaya <
tnurwahyuwij...@gmail.com> wrote:


Dear all,

I want to install Extended Genbox from gerrit.

https://gerrit.gromacs.org/#/c/1175/

How can I put this code into my existing gromacs installation?

Thanks.

Regards,
Tegar
--
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--
==

Justin A. Lemkul, Ph.D.
Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalem...@outerbanks.umaryland.edu | (410) 706-7441

==
--
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Re: [gmx-users] Installing Extended Genbox

2013-10-01 Thread Tegar Nurwahyu Wijaya 
Hi Mark,

Thank you for your reply. Actually I am not trying to add it to the
repository.

I have gromacs 4.6 installed in my computer. When I was trying using
genbox, an error occurred caused by memory lacking. After searched this
mailing list, I got that extended genbox code that can fix my problem. But
I don't know how to put that code into my installed gromacs 4.6. Do you or
anybody know how to do that?

Regards,
Tegar


On Tue, Oct 1, 2013 at 10:12 AM, Mark Abraham wrote:

> I would generally not try to add it to an existing source repository.
> Instead, follow one of the suggestions in
>
> http://www.gromacs.org/Developer_Zone/Git/Gerrit#How_do_I_get_a_copy_of_my_commit_for_which_someone_else_has_uploaded_a_patch.3f
> to
> check out that version.
>
> Mark
>
>
> On Tue, Oct 1, 2013 at 6:24 AM, Tegar Nurwahyu Wijaya <
> tnurwahyuwij...@gmail.com> wrote:
>
> > Dear all,
> >
> > I want to install Extended Genbox from gerrit.
> >
> > https://gerrit.gromacs.org/#/c/1175/
> >
> > How can I put this code into my existing gromacs installation?
> >
> > Thanks.
> >
> > Regards,
> > Tegar
> > --
> > gmx-users mailing listgmx-users@gromacs.org
> > http://lists.gromacs.org/mailman/listinfo/gmx-users
> > * Please search the archive at
> > http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> > * Please don't post (un)subscribe requests to the list. Use the
> > www interface or send it to gmx-users-requ...@gromacs.org.
> > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> >
> --
> gmx-users mailing listgmx-users@gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> * Please search the archive at
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>
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Re: [gmx-users] Installing Extended Genbox

2013-10-01 Thread Mark Abraham 
I would generally not try to add it to an existing source repository.
Instead, follow one of the suggestions in
http://www.gromacs.org/Developer_Zone/Git/Gerrit#How_do_I_get_a_copy_of_my_commit_for_which_someone_else_has_uploaded_a_patch.3f
to
check out that version.

Mark


On Tue, Oct 1, 2013 at 6:24 AM, Tegar Nurwahyu Wijaya <
tnurwahyuwij...@gmail.com> wrote:

> Dear all,
>
> I want to install Extended Genbox from gerrit.
>
> https://gerrit.gromacs.org/#/c/1175/
>
> How can I put this code into my existing gromacs installation?
>
> Thanks.
>
> Regards,
> Tegar
> --
> gmx-users mailing listgmx-users@gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> * Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-requ...@gromacs.org.
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
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[gmx-users] Installing Extended Genbox

2013-09-30 Thread Tegar Nurwahyu Wijaya 
Dear all,

I want to install Extended Genbox from gerrit.

https://gerrit.gromacs.org/#/c/1175/

How can I put this code into my existing gromacs installation?

Thanks.

Regards,
Tegar
-- 
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