On 31 Dec, 2011, at 21:50, Saeid Akbarshahi wrote:
> Whether there is a program in Gromacs that would directly or indirectly
> obtained the flux of water ?
>
> How to obtain the flux water in Gromacs ?
A (long) while back I wrote g_count and g_flux, which are primarily useful for
looking at flux through pores and channels.
https://github.com/orbeckst/g_count
However, the code probably needs to be updated to properly work with the latest
Gromacs releases. If you use it then please check carefully that the results
are what you expect them to be (e.g. based on visual inspection). Feel free to
report problems and fixes/patches through the Issue tracker
https://github.com/orbeckst/g_count/issues .
Cheers,
Oliver
--
Oliver Beckstein * oliver.beckst...@asu.edu
http://physics.asu.edu/home/people/faculty/oliver-beckstein
Arizona State University
Department of Physics
Tempe, AZ 85287-1504
USA
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