Re: [gmx-users] Re: Template file in gromacs4.5.1

2010-10-20 Thread Teemu Murtola
On Tue, Oct 19, 2010 at 4:14 PM, Sikandar Mashayak  wrote:
> Now I have upgraded to gromacs4.5.1 and when I check its template file ,
> its completely different that the earlier version. Does that mean old
> post-processing codes have to rewritten if I were to use new gromacs?

No, it does not.  Some function parameters have changed, and you will
need to make small changes to your post-processing codes to make them
compile with 4.5.1, but all the old functionality is still there.
However, if you want to take advantage of the new selection
functionality in 4.5 and make your post-processing tools much more
powerful, you will need to use the new template.

On Wed, Oct 20, 2010 at 00:40, Sikandar Mashayak  wrote:
> Also, will there be any errors if I use trajectory computed by gromacs4.5.1
> and use post processing code developed for gromacs4.0.7.

If you change your tools to make them compile against 4.5.1, they
should work just fine.  If you use the ones compiled for 4.0.7, they
should be able to read a trajectory from 4.5.1 without problems, but
they can't read .tpr files from 4.5.1, so in practice you may run into
problems.

 - Teemu
-- 
gmx-users mailing listgmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at 
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the 
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists


[gmx-users] Re: Template file in gromacs4.5.1

2010-10-19 Thread Sikandar Mashayak
Also, will there be any errors if I use trajectory computed by gromacs4.5.1
and use post processing code developed for gromacs4.0.7. I plan to keep both
versions of gromacs installed on my system, until I get fully comfortable
new version!

On Tue, Oct 19, 2010 at 4:14 PM, Sikandar Mashayak wrote:

> Hi
>
> I had developed couple of post processing/analysis codes in earlier version
> of gromacs4.0.7.
>
> Now I have upgraded to gromacs4.5.1 and when I check its template file ,
> its completely different that the earlier version. Does that mean old
> post-processing codes have to rewritten if I were to use new gromacs?
>
> thanks
> sikandar
>
-- 
gmx-users mailing listgmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at 
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the 
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists